HEADER IMMUNE SYSTEM 05-APR-16 5J6H TITLE RECOGNITION OF THE MHC CLASS IB MOLECULE H2-Q10 BY THE NATURAL KILLER TITLE 2 CELL RECEPTOR LY49C COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, Q10 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VAL-GLY-ILE-THR-ASN-VAL-ASP-LEU; COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-Q10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090 KEYWDS IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.BERRY,J.ROSSJOHN REVDAT 7 27-SEP-23 5J6H 1 REMARK REVDAT 6 08-JAN-20 5J6H 1 REMARK REVDAT 5 20-SEP-17 5J6H 1 REMARK REVDAT 4 09-AUG-17 5J6H 1 JRNL REMARK REVDAT 3 14-SEP-16 5J6H 1 JRNL REVDAT 2 20-JUL-16 5J6H 1 JRNL REVDAT 1 13-JUL-16 5J6H 0 JRNL AUTH L.C.SULLIVAN,R.BERRY,N.SOSNIN,J.M.WIDJAJA,F.A.DEUSS, JRNL AUTH 2 G.R.BALAJI,N.L.LAGRUTA,M.MIRAMS,J.A.TRAPANI,J.ROSSJOHN, JRNL AUTH 3 A.G.BROOKS,D.M.ANDREWS JRNL TITL RECOGNITION OF THE MAJOR HISTOCOMPATIBILITY COMPLEX (MHC) JRNL TITL 2 CLASS IB MOLECULE H2-Q10 BY THE NATURAL KILLER CELL RECEPTOR JRNL TITL 3 LY49C. JRNL REF J.BIOL.CHEM. V. 291 18740 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27385590 JRNL DOI 10.1074/JBC.M116.737130 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2887 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2070 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2746 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE : 0.2668 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.86690 REMARK 3 B22 (A**2) : -6.92260 REMARK 3 B33 (A**2) : 2.05570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.282 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.278 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.223 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.264 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.222 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3138 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4282 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1372 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 459 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3138 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 399 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3539 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|276 } REMARK 3 ORIGIN FOR THE GROUP (A): 76.7518 82.4146 104.0890 REMARK 3 T TENSOR REMARK 3 T11: -0.0897 T22: -0.0044 REMARK 3 T33: -0.0326 T12: -0.0532 REMARK 3 T13: -0.0316 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.5202 L22: 0.5279 REMARK 3 L33: 0.9513 L12: 0.0248 REMARK 3 L13: -0.4538 L23: -0.1104 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0749 S13: -0.1553 REMARK 3 S21: -0.0135 S22: 0.0465 S23: -0.0490 REMARK 3 S31: 0.0433 S32: -0.0150 S33: -0.0749 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1 - B|99 } REMARK 3 ORIGIN FOR THE GROUP (A): 80.0082 100.6560 98.4779 REMARK 3 T TENSOR REMARK 3 T11: -0.1443 T22: 0.0793 REMARK 3 T33: -0.1318 T12: -0.0404 REMARK 3 T13: 0.0010 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.8639 L22: 3.2504 REMARK 3 L33: 2.6581 L12: 1.6526 REMARK 3 L13: -1.6394 L23: -2.0650 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.1776 S13: 0.2158 REMARK 3 S21: -0.0061 S22: 0.0684 S23: 0.1444 REMARK 3 S31: 0.0135 S32: -0.0348 S33: -0.1499 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9436 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.24100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YN6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG3350, 0.1M SODIUM MALONATE PH REMARK 280 5.0, 0.01M B-NICOTINAMIDE ADENINE DINUCLEOTIDE HYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 195 REMARK 465 PRO A 277 REMARK 465 PRO A 278 REMARK 465 SER A 279 REMARK 465 THR A 280 REMARK 465 ASP A 281 REMARK 465 SER A 282 REMARK 465 ILE A 283 REMARK 465 MET A 284 REMARK 465 SER A 285 REMARK 465 HIS A 286 REMARK 465 ILE A 287 REMARK 465 ALA A 288 REMARK 465 ASP A 289 REMARK 465 LEU A 290 REMARK 465 LEU A 291 REMARK 465 TRP A 292 REMARK 465 PRO A 293 REMARK 465 SER A 294 REMARK 465 LEU A 295 REMARK 465 LYS A 296 REMARK 465 LEU A 297 REMARK 465 TRP A 298 REMARK 465 TRP A 299 REMARK 465 TYR A 300 REMARK 465 LEU A 301 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 SER A 105 OG REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 THR A 225 OG1 CG2 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 ASP A 227 CG OD1 OD2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ILE B 1 CG1 CG2 CD1 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -122.14 59.57 REMARK 500 LEU A 110 -60.38 -102.51 REMARK 500 TYR A 123 -64.11 -121.86 REMARK 500 LEU A 130 18.03 57.12 REMARK 500 ALA A 162 -77.02 -120.61 REMARK 500 TRP B 60 -1.15 77.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 94 OG1 REMARK 620 2 GLN A 96 OE1 106.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J6G RELATED DB: PDB REMARK 900 5J6G CONTAINS THE SAME PROTEIN COMPLEXED WITH LY49C DBREF 5J6H A 1 301 UNP P01898 HA10_MOUSE 25 325 DBREF 5J6H B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 5J6H F 1 8 PDB 5J6H 5J6H 1 8 SEQADV 5J6H MET A 0 UNP P01898 INITIATING METHIONINE SEQADV 5J6H MET B 0 UNP P01887 INITIATING METHIONINE SEQRES 1 A 302 MET GLY SER HIS SER MET ARG TYR PHE GLU THR SER VAL SEQRES 2 A 302 SER ARG PRO GLY LEU GLY GLU PRO ARG PHE ILE ILE VAL SEQRES 3 A 302 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 302 ASP ALA GLU THR PRO ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 302 MET GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR SEQRES 6 A 302 GLN ARG ALA LYS GLY ASN GLU GLN SER PHE HIS VAL SER SEQRES 7 A 302 LEU ARG THR LEU LEU GLY TYR TYR ASN GLN SER GLU SER SEQRES 8 A 302 GLY SER HIS THR ILE GLN TRP MET TYR GLY CYS LYS VAL SEQRES 9 A 302 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR LEU GLN TYR SEQRES 10 A 302 ALA TYR ASP GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 A 302 LEU LYS THR TRP THR ALA ALA ASP VAL ALA ALA ILE ILE SEQRES 12 A 302 THR ARG ARG LYS TRP GLU GLN ALA GLY ALA ALA GLU TYR SEQRES 13 A 302 TYR ARG ALA TYR LEU GLU ALA GLU CYS VAL GLU TRP LEU SEQRES 14 A 302 LEU ARG TYR LEU GLU LEU GLY LYS GLU THR LEU LEU ARG SEQRES 15 A 302 THR ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO GLY SEQRES 16 A 302 SER GLU GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 302 PHE TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN SEQRES 18 A 302 GLY GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR SEQRES 19 A 302 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER SEQRES 20 A 302 VAL VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS SEQRES 21 A 302 HIS VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU SEQRES 22 A 302 ARG TRP GLU PRO PRO PRO SER THR ASP SER ILE MET SER SEQRES 23 A 302 HIS ILE ALA ASP LEU LEU TRP PRO SER LEU LYS LEU TRP SEQRES 24 A 302 TRP TYR LEU SEQRES 1 B 100 MET ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 B 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 B 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 B 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 B 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 B 100 TYR ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO SEQRES 8 B 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 8 VAL GLY ILE THR ASN VAL ASP LEU HET NA A 401 1 HET NCA A 402 9 HET NA B 101 1 HETNAM NA SODIUM ION HETNAM NCA NICOTINAMIDE FORMUL 4 NA 2(NA 1+) FORMUL 5 NCA C6 H6 N2 O FORMUL 7 HOH *147(H2 O) HELIX 1 AA1 GLY A 56 TYR A 85 1 30 HELIX 2 AA2 ASP A 137 ALA A 150 1 14 HELIX 3 AA3 GLY A 151 ALA A 162 1 12 HELIX 4 AA4 ALA A 162 GLY A 175 1 14 HELIX 5 AA5 GLY A 175 LEU A 180 1 6 HELIX 6 AA6 LYS A 253 GLN A 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O ARG A 111 N LYS A 102 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 GLY A 194 0 SHEET 2 AA2 4 ASP A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 GLY A 194 0 SHEET 2 AA3 4 ASP A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLU A 223 0 SHEET 2 AA4 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 TYR A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O THR B 28 N GLN B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O THR B 28 N GLN B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.02 LINK OG1 THR A 94 NA NA A 401 1555 1555 2.89 LINK OE1 GLN A 96 NA NA A 401 1555 1555 2.70 LINK OD1 ASN B 24 NA NA B 101 1555 1555 2.52 CISPEP 1 GLY A 1 SER A 2 0 -2.04 CISPEP 2 ASP A 106 GLY A 107 0 1.32 CISPEP 3 TYR A 209 PRO A 210 0 6.34 CISPEP 4 HIS B 31 PRO B 32 0 4.54 SITE 1 AC1 6 THR A 94 GLN A 96 ALA A 117 TYR A 118 SITE 2 AC1 6 ASP A 119 GLY A 120 SITE 1 AC2 4 PRO A 47 ARG A 48 GLU A 53 TYR B 94 SITE 1 AC3 6 ALA A 236 GLY A 237 ARG B 12 ILE B 22 SITE 2 AC3 6 ASN B 24 HIS B 67 CRYST1 55.420 81.660 97.920 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010212 0.00000