HEADER CELL ADHESION 05-APR-16 5J6Q TITLE CWP8 FROM CLOSTRIDIUM DIFFICILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL BINDING PROTEIN CWP8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE (STRAIN 630); SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 ATCC: BAA-1382; SOURCE 5 GENE: CWP8, CD630_27990; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS CELL WALL PROTEIN, S-LAYER, CWB2 DOMAIN, TOPRIM FOLD, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.RENKO,A.USENIK,D.TURK REVDAT 2 22-MAR-17 5J6Q 1 JRNL REMARK REVDAT 1 08-FEB-17 5J6Q 0 JRNL AUTH A.USENIK,M.RENKO,M.MIHELIC,N.LINDIC,J.BORISEK,A.PERDIH, JRNL AUTH 2 G.PRETNAR,U.MULLER,D.TURK JRNL TITL THE CWB2 CELL WALL-ANCHORING MODULE IS REVEALED BY THE JRNL TITL 2 CRYSTAL STRUCTURES OF THE CLOSTRIDIUM DIFFICILE CELL WALL JRNL TITL 3 PROTEINS CWP8 AND CWP6. JRNL REF STRUCTURE V. 25 514 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28132783 JRNL DOI 10.1016/J.STR.2016.12.018 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MAIN REMARK 3 AUTHORS : TURK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 52186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NONE REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 100.00 REMARK 3 FREE R VALUE TEST SET COUNT : 52186 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1766 REMARK 3 BIN R VALUE (WORKING SET) : 0.3371 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 100.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1766 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4553 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75400 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : 0.12400 REMARK 3 B12 (A**2) : 0.45200 REMARK 3 B13 (A**2) : -0.55200 REMARK 3 B23 (A**2) : 0.36400 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FREE KICK ML TARGET FUNCTION USES ALL REMARK 3 DATA FOR CALCULATION OF PHASE ERROR ESTIMATES FROM RANDOMLY REMARK 3 DISPLACED ATOMS. PRAZNIKAR, J. & TURK, D. (2014) FREE KICK REMARK 3 INSTEAD OF CROSS-VALIDATION IN MAXIMUM-LIKELIHOOD REFINEMENT OF REMARK 3 MACROMOLECULAR CRYSTAL STRUCTURES. ACTA CRYST. D70, 3124-3134. REMARK 4 REMARK 4 5J6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000214126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12; 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; ESRF REMARK 200 BEAMLINE : 14.1; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00; 1.069 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 15.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.03000 REMARK 200 R SYM FOR SHELL (I) : 0.88000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.04 M AMMONIUM SULFATE 0.17 M REMARK 280 POTASSIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K. 2.04 M AMMONIUM SULFATE 0.17 M POTASSIUM ACETATE 5 MM REMARK 280 PLATINUM POTASSIUM THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 19 CE NZ REMARK 480 LYS A 36 NZ REMARK 480 LYS A 99 NZ REMARK 480 THR A 114 OG1 CG2 REMARK 480 LEU A 115 CG CD1 CD2 REMARK 480 GLU A 117 CG CD OE1 OE2 REMARK 480 SER A 119 OG REMARK 480 LYS A 139 CG CD CE NZ REMARK 480 ASP A 140 CG OD1 OD2 REMARK 480 LYS A 158 CG CD CE NZ REMARK 480 SER A 162 OG REMARK 480 GLU A 163 CD OE1 OE2 REMARK 480 THR A 166 OG1 CG2 REMARK 480 PHE A 167 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU A 168 CD OE1 OE2 REMARK 480 LYS A 172 NZ REMARK 480 LYS A 218 CD CE NZ REMARK 480 GLU A 234 CG CD OE1 OE2 REMARK 480 ASP A 237 CG OD1 OD2 REMARK 480 ASP A 240 CG OD1 OD2 REMARK 480 LYS A 241 CG CD CE NZ REMARK 480 LYS A 243 CE NZ REMARK 480 LYS A 268 CG CD CE NZ REMARK 480 LYS A 287 CD CE NZ REMARK 480 LYS A 384 CE NZ REMARK 480 GLU A 404 CG CD OE1 OE2 REMARK 480 LYS A 462 CE NZ REMARK 480 LYS A 485 CG CD CE NZ REMARK 480 LYS A 494 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 63 HD21 ASN A 512 1445 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 45 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 VAL A 90 CA - CB - CG2 ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 -3.47 76.81 REMARK 500 LEU A 115 -64.95 -104.10 REMARK 500 ALA A 116 -70.49 -63.33 REMARK 500 GLU A 117 152.66 76.90 REMARK 500 ASP A 118 -137.07 60.13 REMARK 500 ASP A 120 -53.03 176.71 REMARK 500 ILE A 160 72.93 -100.81 REMARK 500 GLU A 163 29.36 -75.87 REMARK 500 THR A 166 105.37 175.08 REMARK 500 GLU A 168 -154.69 -94.72 REMARK 500 LYS A 180 -152.45 -90.79 REMARK 500 LEU A 182 109.38 -55.46 REMARK 500 ILE A 204 -25.91 -143.62 REMARK 500 ASP A 239 69.50 -67.74 REMARK 500 LYS A 241 -172.56 62.96 REMARK 500 GLU A 288 130.19 -34.48 REMARK 500 ASN A 367 32.06 -88.62 REMARK 500 SER A 383 171.95 -56.33 REMARK 500 LYS A 397 130.88 -176.81 REMARK 500 GLU A 557 -149.76 -99.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1209 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1210 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1211 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1212 DISTANCE = 7.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 709 DBREF 5J6Q A 6 600 UNP Q183N4 Q183N4_PEPD6 35 629 SEQRES 1 A 595 VAL ASP LYS ASN TYR THR VAL SER ALA LYS ASP SER ALA SEQRES 2 A 595 LYS LEU ILE GLU GLU VAL ARG LYS ALA LEU GLU VAL LYS SEQRES 3 A 595 PHE GLU ASP THR LYS ALA GLY ALA ASN VAL ASN ASP ARG SEQRES 4 A 595 VAL TYR ASP ILE LYS VAL ASP ASN VAL ASN LEU THR ASN SEQRES 5 A 595 ALA THR GLN LEU GLN ASN LYS ILE ASN SER LEU THR GLU SEQRES 6 A 595 GLY GLN SER LEU LYS VAL THR ILE GLN ASP LYS GLY HIS SEQRES 7 A 595 GLN VAL LEU GLY GLY LYS VAL VAL ASP TYR LYS ILE GLU SEQRES 8 A 595 ASN TYR LYS THR ALA GLN GLU ILE VAL ASP ALA VAL ASN SEQRES 9 A 595 ALA TYR ASN ALA THR LEU ALA GLU ASP SER ASP ASN LYS SEQRES 10 A 595 LEU THR ALA THR ILE LYS SER THR ASN THR VAL GLU VAL SEQRES 11 A 595 LYS ARG ALA LYS ASP SER ALA ASN VAL ILE THR LEU ASN SEQRES 12 A 595 VAL GLY ASP GLN HIS LEU ASP PHE SER LYS VAL ILE THR SEQRES 13 A 595 SER GLU GLU GLY THR PHE GLU GLY TYR GLU LYS ARG TYR SEQRES 14 A 595 SER ASP ILE ASP SER LYS GLU LEU HIS THR VAL THR VAL SEQRES 15 A 595 LYS ASN ALA ASP LEU GLN ASP ILE SER ALA GLU GLU LEU SEQRES 16 A 595 PHE ASP GLY ILE ARG LEU THR THR LEU GLY ARG GLU ILE SEQRES 17 A 595 VAL ASN LYS VAL LYS ASN GLY TYR ALA LEU THR PHE GLU SEQRES 18 A 595 ASN GLU ALA ILE LEU THR GLN GLU GLN GLU ASP SER ASP SEQRES 19 A 595 ASP LYS ASP LYS PRO GLU LYS SER SER PHE ASP ILE VAL SEQRES 20 A 595 LEU SER LYS ALA ASN GLU LYS PRO GLU THR ILE SER VAL SEQRES 21 A 595 SER SER LYS ASN HIS LYS LEU VAL ARG ASP LEU HIS LYS SEQRES 22 A 595 VAL LEU THR ASP VAL LYS ASP GLY LYS GLU LEU LYS VAL SEQRES 23 A 595 GLU VAL LEU SER GLY ASP SER ARG PHE THR THR ALA VAL SEQRES 24 A 595 GLU VAL SER LYS GLU ARG PHE LYS ASP GLY GLU ALA GLU SEQRES 25 A 595 ALA ILE ILE LEU VAL GLY GLU ASP ALA ILE VAL ASP GLY SEQRES 26 A 595 LEU ALA SER ALA PRO LEU ALA SER GLN LYS ASN ALA PRO SEQRES 27 A 595 ILE LEU LEU SER LYS LYS ASP SER LEU PRO SER GLU ILE SEQRES 28 A 595 GLU ALA GLU ILE LEU ARG VAL LEU GLY SER ASN LEU SER SEQRES 29 A 595 SER LYS LYS ILE TYR ILE VAL GLY GLY GLU SER LYS VAL SEQRES 30 A 595 SER LYS GLU THR GLU GLU LYS LEU SER LYS LEU GLY VAL SEQRES 31 A 595 SER LYS VAL GLU ARG VAL SER GLY GLU ASP ARG PHE GLU SEQRES 32 A 595 THR SER LEU GLU ILE ALA LYS GLN LEU LYS ASP THR PHE SEQRES 33 A 595 LYS THR ALA PHE VAL VAL GLY GLY ASN GLY GLU ALA ASP SEQRES 34 A 595 ALA MET SER ILE SER ALA ARG ALA ALA GLN PHE GLY ALA SEQRES 35 A 595 PRO ILE ILE VAL THR GLY ASN GLU LEU ASP ALA ASN ALA SEQRES 36 A 595 GLU LYS LEU LEU LYS GLY LYS GLU LEU GLU ILE VAL GLY SEQRES 37 A 595 GLY GLU ASN SER VAL SER LYS GLU VAL GLU ASP LYS LEU SEQRES 38 A 595 VAL ASP ILE ASP LEU ASN ASN LYS VAL GLU ARG LEU ALA SEQRES 39 A 595 GLY GLU ASN ARG LYS ASP THR ASN ALA LYS VAL ILE ASN SEQRES 40 A 595 LYS TYR TYR ALA GLY ALA THR LYS ALA TYR VAL ALA LYS SEQRES 41 A 595 ASP GLY TYR VAL GLY GLY ASN GLY GLN LEU VAL ASP ALA SEQRES 42 A 595 LEU THR ALA ALA PRO LEU ALA ALA SER SER LYS ALA PRO SEQRES 43 A 595 ILE VAL LEU THR THR GLU GLU LEU SER LYS SER GLN GLU SEQRES 44 A 595 GLU VAL VAL GLU LEU ARG LEU LYS ASN ALA THR LYS LEU SEQRES 45 A 595 VAL GLN ILE GLY GLU GLY ILE ALA LYS ASN ALA ILE GLU SEQRES 46 A 595 LYS ILE ALA GLU LYS ILE ASN LEU PHE THR HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET CL A 709 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 CL CL 1- FORMUL 11 HOH *412(H2 O) HELIX 1 AA1 SER A 17 VAL A 30 1 14 HELIX 2 AA2 ASN A 57 SER A 67 1 11 HELIX 3 AA3 THR A 100 THR A 114 1 15 HELIX 4 AA4 THR A 207 ASN A 219 1 13 HELIX 5 AA5 THR A 232 SER A 238 1 7 HELIX 6 AA6 ASN A 269 GLY A 286 1 18 HELIX 7 AA7 SER A 298 PHE A 311 1 14 HELIX 8 AA8 ALA A 326 SER A 333 1 8 HELIX 9 AA9 SER A 333 LYS A 340 1 8 HELIX 10 AB1 PRO A 353 GLY A 365 1 13 HELIX 11 AB2 SER A 366 SER A 370 5 5 HELIX 12 AB3 SER A 383 LYS A 392 1 10 HELIX 13 AB4 ASP A 405 GLN A 416 1 12 HELIX 14 AB5 GLY A 431 MET A 436 1 6 HELIX 15 AB6 ILE A 438 GLN A 444 1 7 HELIX 16 AB7 ASP A 457 LYS A 465 1 9 HELIX 17 AB8 SER A 479 ASP A 490 1 12 HELIX 18 AB9 ASN A 502 TYR A 515 1 14 HELIX 19 AC1 GLY A 531 GLN A 534 5 4 HELIX 20 AC2 LEU A 535 SER A 548 1 14 HELIX 21 AC3 SER A 560 LEU A 571 1 12 HELIX 22 AC4 ALA A 585 ILE A 596 1 12 SHEET 1 AA1 5 TYR A 10 SER A 13 0 SHEET 2 AA1 5 HIS A 183 LYS A 188 1 O THR A 186 N TYR A 10 SHEET 3 AA1 5 SER A 73 ASP A 80 -1 N LEU A 74 O VAL A 187 SHEET 4 AA1 5 TYR A 46 VAL A 50 -1 N LYS A 49 O THR A 77 SHEET 5 AA1 5 VAL A 53 ASN A 54 -1 O VAL A 53 N VAL A 50 SHEET 1 AA2 2 GLN A 84 LEU A 86 0 SHEET 2 AA2 2 LYS A 89 VAL A 91 -1 O VAL A 91 N GLN A 84 SHEET 1 AA3 2 TYR A 93 ILE A 95 0 SHEET 2 AA3 2 TYR A 174 ASP A 176 -1 O SER A 175 N LYS A 94 SHEET 1 AA4 3 LEU A 123 SER A 129 0 SHEET 2 AA4 3 THR A 132 ARG A 137 -1 O LYS A 136 N THR A 124 SHEET 3 AA4 3 ILE A 145 ASN A 148 -1 O ILE A 145 N VAL A 135 SHEET 1 AA5 2 LEU A 154 VAL A 159 0 SHEET 2 AA5 2 TYR A 170 LYS A 172 -1 O GLU A 171 N ASP A 155 SHEET 1 AA6 4 ASP A 191 SER A 196 0 SHEET 2 AA6 4 GLU A 261 SER A 267 1 O SER A 264 N GLN A 193 SHEET 3 AA6 4 SER A 247 SER A 254 -1 N ILE A 251 O ILE A 263 SHEET 4 AA6 4 ALA A 222 ALA A 229 -1 N THR A 224 O VAL A 252 SHEET 1 AA7 4 VAL A 291 LEU A 294 0 SHEET 2 AA7 4 LEU A 577 ILE A 580 1 O GLN A 579 N GLU A 292 SHEET 3 AA7 4 ALA A 521 ALA A 524 1 N VAL A 523 O ILE A 580 SHEET 4 AA7 4 ILE A 552 LEU A 554 1 O VAL A 553 N TYR A 522 SHEET 1 AA8 4 ILE A 344 SER A 347 0 SHEET 2 AA8 4 ALA A 318 GLY A 323 1 N ILE A 320 O LEU A 345 SHEET 3 AA8 4 LYS A 372 VAL A 376 1 O TYR A 374 N ILE A 319 SHEET 4 AA8 4 LYS A 397 VAL A 401 1 O VAL A 401 N ILE A 375 SHEET 1 AA9 4 ILE A 449 THR A 452 0 SHEET 2 AA9 4 THR A 423 GLY A 428 1 N PHE A 425 O ILE A 450 SHEET 3 AA9 4 GLU A 468 VAL A 472 1 O GLU A 470 N VAL A 426 SHEET 4 AA9 4 GLU A 496 LEU A 498 1 O LEU A 498 N ILE A 471 SITE 1 AC1 6 SER A 560 LYS A 561 SER A 562 HOH A 882 SITE 2 AC1 6 HOH A 891 HOH A 895 SITE 1 AC2 5 ASN A 502 ARG A 503 TYR A 528 HOH A 972 SITE 2 AC2 5 HOH A 987 SITE 1 AC3 4 ARG A 299 GLN A 534 HOH A 817 HOH A 861 SITE 1 AC4 3 ASP A 405 ARG A 406 HOH A 823 SITE 1 AC5 8 ARG A 205 ALA A 585 LYS A 586 HOH A 806 SITE 2 AC5 8 HOH A 888 HOH A 953 HOH A 976 HOH A 999 SITE 1 AC6 8 GLN A 60 ASN A 63 LYS A 64 LEU A 569 SITE 2 AC6 8 ARG A 570 HOH A 820 HOH A 850 HOH A1000 SITE 1 AC7 8 GLU A 292 GLU A 309 LYS A 520 TYR A 522 SITE 2 AC7 8 LEU A 544 LYS A 576 VAL A 578 HOH A 805 SITE 1 AC8 3 LYS A 31 LYS A 595 HOH A 878 SITE 1 AC9 4 ARG A 211 VAL A 293 HOH A 844 HOH A1200 CRYST1 45.454 63.432 86.407 97.25 100.53 91.96 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022000 0.000753 0.004230 0.00000 SCALE2 0.000000 0.015774 0.002146 0.00000 SCALE3 0.000000 0.000000 0.011880 0.00000