HEADER IMMUNE SYSTEM 05-APR-16 5J74 TITLE FLUOROGEN ACTIVATING PROTEIN AM2.2 IN COMPLEX WITH TO1-2P COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV AM2.2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: PICHIA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4919 KEYWDS FLUOROGEN ACTIVATING PROTEIN DRUG DISCOVERY BIOSENSOR PROTEIN KEYWDS 2 TRAFFICKING, PROTEIN BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.L.STANFIELD,I.A.WILSON,Y.WU REVDAT 4 27-SEP-23 5J74 1 REMARK REVDAT 3 27-NOV-19 5J74 1 REMARK REVDAT 2 13-SEP-17 5J74 1 REMARK REVDAT 1 25-MAY-16 5J74 0 JRNL AUTH Y.WU,S.R.STAUFFER,R.L.STANFIELD,P.H.TAPIA,O.URSU,G.W.FISHER, JRNL AUTH 2 C.SZENT-GYORGYI,A.EVANGELISTI,A.WALLER,J.J.STROUSE, JRNL AUTH 3 M.B.CARTER,C.BOLOGA,K.GOUVEIA,M.POSLUSNEY,A.S.WAGGONER, JRNL AUTH 4 C.W.LINDSLEY,J.W.JARVIK,L.A.SKLAR JRNL TITL DISCOVERY OF SMALL-MOLECULE NONFLUORESCENT INHIBITORS OF JRNL TITL 2 FLUOROGEN-FLUOROGEN ACTIVATING PROTEIN BINDING PAIR. JRNL REF J BIOMOL SCREEN V. 21 74 2016 JRNL REFN ESSN 1552-454X JRNL PMID 26442911 JRNL DOI 10.1177/1087057115609145 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 846 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1109 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08000 REMARK 3 B22 (A**2) : 2.34000 REMARK 3 B33 (A**2) : 0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.785 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3626 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3246 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4934 ; 1.493 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7504 ; 1.152 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 7.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.162 ;24.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;16.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4134 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 810 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1854 ; 9.116 ; 4.402 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1855 ; 9.113 ; 4.404 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2310 ;11.093 ; 6.622 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2311 ;11.090 ; 6.624 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1772 ;11.373 ; 4.947 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1773 ;11.370 ; 4.948 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2625 ;13.457 ; 7.155 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3751 ;14.624 ;35.586 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3752 ;14.622 ;35.596 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 254 B 2 254 24056 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 86.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B0S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG MONOMETHYL ETHER 5000 0.2M REMARK 280 POTASSIUM DIHYDROGEN PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.72400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.41500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.49750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.72400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.41500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.49750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.72400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.41500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.49750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.72400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.41500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.49750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 ILE A 124 REMARK 465 LEU A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 ALA A 257 REMARK 465 ASP A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 GLN B 1 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 ILE B 124 REMARK 465 LEU B 125 REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 GLY B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 GLY B 136 REMARK 465 SER B 137 REMARK 465 GLY B 138 REMARK 465 GLY B 139 REMARK 465 GLY B 140 REMARK 465 GLY B 141 REMARK 465 SER B 142 REMARK 465 GLY B 256 REMARK 465 ALA B 257 REMARK 465 ASP B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 143 CG OD1 ND2 REMARK 470 ASN B 143 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 22 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU A 83 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 CYS B 22 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 54 -63.35 72.22 REMARK 500 ASP A 110 116.77 -161.99 REMARK 500 ASN A 170 -92.66 -109.03 REMARK 500 ASN A 194 -43.29 69.63 REMARK 500 ASP A 203 -9.29 -59.87 REMARK 500 ILE B 54 -63.31 71.81 REMARK 500 ASP B 110 115.51 -161.31 REMARK 500 ASN B 170 -93.65 -108.32 REMARK 500 ASN B 194 -43.12 68.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 104 THR B 105 -145.75 REMARK 500 THR B 105 GLY B 106 -46.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GN B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J75 RELATED DB: PDB DBREF 5J74 A 1 264 PDB 5J74 5J74 1 264 DBREF 5J74 B 1 264 PDB 5J74 5J74 1 264 SEQRES 1 A 264 GLN VAL GLN LEU VAL GLU SER GLU ALA GLU VAL LYS LYS SEQRES 2 A 264 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 A 264 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 A 264 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY THR ILE SEQRES 5 A 264 PRO ILE PHE GLY THR ALA ASP TYR ALA GLN GLU PHE GLN SEQRES 6 A 264 GLY ARG VAL THR ILE THR THR ASP GLU SER THR SER THR SEQRES 7 A 264 ALA TYR MET GLU LEU SER GLY LEU ARG SER GLU ASP THR SEQRES 8 A 264 ALA VAL TYR TYR CYS VAL LEU LEU GLY THR THR MET VAL SEQRES 9 A 264 THR GLY HIS TYR PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 A 264 VAL THR VAL SER SER GLY ILE LEU GLY SER GLY GLY GLY SEQRES 11 A 264 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER ASN SEQRES 12 A 264 PHE MET LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 13 A 264 GLY GLN SER VAL THR ILE SER CYS SER GLY SER GLY SER SEQRES 14 A 264 ASN ILE GLY ASN ASN LYS VAL ASN TRP TYR GLN GLN LEU SEQRES 15 A 264 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN ASN SEQRES 16 A 264 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 17 A 264 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 18 A 264 GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 19 A 264 ASP ASP GLY LEU SER GLY TYR VAL PHE GLY THR GLY THR SEQRES 20 A 264 LYS LEU THR VAL LEU ALA ALA SER GLY ALA ASP HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS SEQRES 1 B 264 GLN VAL GLN LEU VAL GLU SER GLU ALA GLU VAL LYS LYS SEQRES 2 B 264 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 264 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 B 264 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY THR ILE SEQRES 5 B 264 PRO ILE PHE GLY THR ALA ASP TYR ALA GLN GLU PHE GLN SEQRES 6 B 264 GLY ARG VAL THR ILE THR THR ASP GLU SER THR SER THR SEQRES 7 B 264 ALA TYR MET GLU LEU SER GLY LEU ARG SER GLU ASP THR SEQRES 8 B 264 ALA VAL TYR TYR CYS VAL LEU LEU GLY THR THR MET VAL SEQRES 9 B 264 THR GLY HIS TYR PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 264 VAL THR VAL SER SER GLY ILE LEU GLY SER GLY GLY GLY SEQRES 11 B 264 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER ASN SEQRES 12 B 264 PHE MET LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 13 B 264 GLY GLN SER VAL THR ILE SER CYS SER GLY SER GLY SER SEQRES 14 B 264 ASN ILE GLY ASN ASN LYS VAL ASN TRP TYR GLN GLN LEU SEQRES 15 B 264 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN ASN SEQRES 16 B 264 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 17 B 264 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 18 B 264 GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 19 B 264 ASP ASP GLY LEU SER GLY TYR VAL PHE GLY THR GLY THR SEQRES 20 B 264 LYS LEU THR VAL LEU ALA ALA SER GLY ALA ASP HIS HIS SEQRES 21 B 264 HIS HIS HIS HIS HET PO4 A 301 5 HET 6GN A 302 47 HET PO4 B 301 5 HET 6GN B 302 47 HETNAM PO4 PHOSPHATE ION HETNAM 6GN 1-(17-AMINO-5,8-DIOXO-12,15-DIOXA-4,9-DIAZAHEPTADECAN- HETNAM 2 6GN 1-YL)-4-{[3-(3-SULFOPROPYL)-1,3-BENZOTHIAZOL-3-IUM-2- HETNAM 3 6GN YL]METHYL}QUINOLIN-1-IUM FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 6GN 2(C33 H45 N5 O7 S2 2+) FORMUL 7 HOH *5(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 GLN A 62 GLN A 65 5 4 HELIX 3 AA3 ARG A 87 THR A 91 5 5 HELIX 4 AA4 GLN A 222 GLU A 226 5 5 HELIX 5 AA5 THR B 28 TYR B 32 5 5 HELIX 6 AA6 GLN B 62 GLN B 65 5 4 HELIX 7 AA7 ARG B 87 THR B 91 5 5 HELIX 8 AA8 GLN B 222 GLU B 226 5 5 SHEET 1 AA1 4 GLN A 3 GLU A 6 0 SHEET 2 AA1 4 SER A 17 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 SER A 84 -1 O MET A 81 N VAL A 20 SHEET 4 AA1 4 VAL A 68 ASP A 73 -1 N THR A 71 O TYR A 80 SHEET 1 AA2 6 GLU A 10 VAL A 11 0 SHEET 2 AA2 6 THR A 116 THR A 119 1 O LEU A 117 N GLU A 10 SHEET 3 AA2 6 ALA A 92 THR A 101 -1 N ALA A 92 O VAL A 118 SHEET 4 AA2 6 ALA A 33 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 THR A 51 -1 O GLY A 49 N TRP A 36 SHEET 6 AA2 6 ALA A 58 TYR A 60 -1 O ASP A 59 N GLY A 50 SHEET 1 AA3 4 GLU A 10 VAL A 11 0 SHEET 2 AA3 4 THR A 116 THR A 119 1 O LEU A 117 N GLU A 10 SHEET 3 AA3 4 ALA A 92 THR A 101 -1 N ALA A 92 O VAL A 118 SHEET 4 AA3 4 TYR A 108 TRP A 112 -1 O TYR A 111 N LEU A 98 SHEET 1 AA4 5 SER A 151 GLY A 154 0 SHEET 2 AA4 5 THR A 247 VAL A 251 1 O THR A 250 N ALA A 152 SHEET 3 AA4 5 ALA A 227 ASP A 235 -1 N ALA A 227 O LEU A 249 SHEET 4 AA4 5 ASN A 177 GLN A 181 -1 N ASN A 177 O ALA A 232 SHEET 5 AA4 5 LYS A 188 ILE A 191 -1 O LEU A 190 N TRP A 178 SHEET 1 AA5 4 SER A 151 GLY A 154 0 SHEET 2 AA5 4 THR A 247 VAL A 251 1 O THR A 250 N ALA A 152 SHEET 3 AA5 4 ALA A 227 ASP A 235 -1 N ALA A 227 O LEU A 249 SHEET 4 AA5 4 GLY A 240 PHE A 243 -1 O VAL A 242 N ALA A 233 SHEET 1 AA6 3 VAL A 160 SER A 165 0 SHEET 2 AA6 3 SER A 213 ILE A 218 -1 O ALA A 214 N CYS A 164 SHEET 3 AA6 3 PHE A 205 SER A 210 -1 N SER A 206 O ALA A 217 SHEET 1 AA7 4 GLN B 3 GLU B 6 0 SHEET 2 AA7 4 SER B 17 SER B 25 -1 O LYS B 23 N VAL B 5 SHEET 3 AA7 4 THR B 78 SER B 84 -1 O MET B 81 N VAL B 20 SHEET 4 AA7 4 VAL B 68 ASP B 73 -1 N THR B 71 O TYR B 80 SHEET 1 AA8 6 GLU B 10 LYS B 12 0 SHEET 2 AA8 6 THR B 116 VAL B 120 1 O LEU B 117 N GLU B 10 SHEET 3 AA8 6 ALA B 92 THR B 101 -1 N ALA B 92 O VAL B 118 SHEET 4 AA8 6 ALA B 33 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA8 6 LEU B 45 THR B 51 -1 O GLY B 49 N TRP B 36 SHEET 6 AA8 6 ALA B 58 TYR B 60 -1 O ASP B 59 N GLY B 50 SHEET 1 AA9 4 GLU B 10 LYS B 12 0 SHEET 2 AA9 4 THR B 116 VAL B 120 1 O LEU B 117 N GLU B 10 SHEET 3 AA9 4 ALA B 92 THR B 101 -1 N ALA B 92 O VAL B 118 SHEET 4 AA9 4 TYR B 108 TRP B 112 -1 O TYR B 111 N LEU B 98 SHEET 1 AB1 5 SER B 151 GLY B 154 0 SHEET 2 AB1 5 THR B 247 VAL B 251 1 O THR B 250 N ALA B 152 SHEET 3 AB1 5 ALA B 227 ASP B 235 -1 N ALA B 227 O LEU B 249 SHEET 4 AB1 5 ASN B 177 GLN B 181 -1 N ASN B 177 O ALA B 232 SHEET 5 AB1 5 LYS B 188 ILE B 191 -1 O LEU B 190 N TRP B 178 SHEET 1 AB2 4 SER B 151 GLY B 154 0 SHEET 2 AB2 4 THR B 247 VAL B 251 1 O THR B 250 N ALA B 152 SHEET 3 AB2 4 ALA B 227 ASP B 235 -1 N ALA B 227 O LEU B 249 SHEET 4 AB2 4 GLY B 240 PHE B 243 -1 O VAL B 242 N ALA B 233 SHEET 1 AB3 3 VAL B 160 SER B 165 0 SHEET 2 AB3 3 SER B 213 ILE B 218 -1 O ALA B 214 N CYS B 164 SHEET 3 AB3 3 PHE B 205 SER B 210 -1 N SER B 206 O ALA B 217 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.02 SSBOND 2 CYS A 164 CYS A 231 1555 1555 2.02 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.05 SSBOND 4 CYS B 164 CYS B 231 1555 1555 2.03 CISPEP 1 ALA A 253 ALA A 254 0 3.27 CISPEP 2 ALA B 254 SER B 255 0 -3.00 SITE 1 AC1 5 THR A 102 VAL A 104 THR A 105 HIS A 107 SITE 2 AC1 5 ASP A 203 SITE 1 AC2 14 SER A 35 TRP A 47 ASP A 59 TYR A 108 SITE 2 AC2 14 ASP A 110 LYS A 175 TYR A 179 TRP A 234 SITE 3 AC2 14 TYR A 241 ILE B 52 PHE B 55 THR B 57 SITE 4 AC2 14 SER B 239 6GN B 302 SITE 1 AC3 7 SER A 165 GLY A 166 PHE B 144 SER B 167 SITE 2 AC3 7 SER B 169 ASN B 170 ASP B 235 SITE 1 AC4 17 PHE A 55 TYR A 60 GLN A 62 GLN A 65 SITE 2 AC4 17 LEU A 238 SER A 239 6GN A 302 SER B 35 SITE 3 AC4 17 TRP B 47 ASP B 59 TYR B 108 ASP B 110 SITE 4 AC4 17 LYS B 175 TYR B 179 TRP B 234 TYR B 241 SITE 5 AC4 17 HOH B 401 CRYST1 79.448 114.830 130.995 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007634 0.00000