HEADER IMMUNE SYSTEM 05-APR-16 5J75 TITLE FLUOROGEN ACTIVATING PROTEIN AM2.2 IN COMPLEX WITH ML342 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV AM2.2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: PICHIA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4919 KEYWDS FLUOROGEN ACTIVATING PROTEIN, DRUG DISCOVERY, BIOSENSOR, PROTEIN KEYWDS 2 TRAFFICKING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.L.STANFIELD,I.A.WILSON,Y.WU REVDAT 5 27-SEP-23 5J75 1 REMARK REVDAT 4 27-NOV-19 5J75 1 REMARK REVDAT 3 24-OCT-18 5J75 1 TITLE REVDAT 2 13-SEP-17 5J75 1 REMARK REVDAT 1 04-MAY-16 5J75 0 JRNL AUTH Y.WU,S.R.STAUFFER,R.L.STANFIELD,P.H.TAPIA,O.URSU,G.W.FISHER, JRNL AUTH 2 C.SZENT-GYORGYI,A.EVANGELISTI,A.WALLER,J.J.STROUSE, JRNL AUTH 3 M.B.CARTER,C.BOLOGA,K.GOUVEIA,M.POSLUSNEY,A.S.WAGGONER, JRNL AUTH 4 C.W.LINDSLEY,J.W.JARVIK,L.A.SKLAR JRNL TITL DISCOVERY OF SMALL-MOLECULE NONFLUORESCENT INHIBITORS OF JRNL TITL 2 FLUOROGEN-FLUOROGEN ACTIVATING PROTEIN BINDING PAIR. JRNL REF J BIOMOL SCREEN V. 21 74 2016 JRNL REFN ESSN 1552-454X JRNL PMID 26442911 JRNL DOI 10.1177/1087057115609145 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 29736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3610 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3220 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4920 ; 1.617 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7440 ; 1.172 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 6.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;39.716 ;24.853 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;14.618 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.238 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4136 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 1.815 ; 2.411 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1861 ; 1.815 ; 2.411 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2320 ; 3.020 ; 3.597 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2319 ; 3.018 ; 3.599 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 2.097 ; 2.599 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1751 ; 2.096 ; 2.599 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2601 ; 3.285 ; 3.819 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3769 ; 5.334 ;19.013 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3770 ; 5.334 ;19.015 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 254 B 2 254 24848 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5844 -25.1212 81.9816 REMARK 3 T TENSOR REMARK 3 T11: 0.0164 T22: 0.2416 REMARK 3 T33: 0.0353 T12: -0.0156 REMARK 3 T13: -0.0101 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 2.6299 L22: 0.8091 REMARK 3 L33: 3.0704 L12: -0.3907 REMARK 3 L13: 0.3581 L23: -0.9352 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.5416 S13: -0.2026 REMARK 3 S21: -0.0419 S22: -0.0041 S23: 0.1277 REMARK 3 S31: 0.0058 S32: -0.1880 S33: -0.0377 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7441 -25.8007 85.8418 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: 0.1599 REMARK 3 T33: 0.0222 T12: -0.0189 REMARK 3 T13: -0.0010 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.8030 L22: 2.0119 REMARK 3 L33: 0.8466 L12: -0.2069 REMARK 3 L13: -0.1728 L23: 0.5283 REMARK 3 S TENSOR REMARK 3 S11: -0.1032 S12: 0.3180 S13: -0.0873 REMARK 3 S21: -0.0129 S22: 0.0924 S23: -0.1632 REMARK 3 S31: -0.0758 S32: 0.0186 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7620 -24.8758 112.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.2245 REMARK 3 T33: 0.0424 T12: 0.0255 REMARK 3 T13: -0.0075 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 2.6588 L22: 1.2376 REMARK 3 L33: 3.5045 L12: -0.0895 REMARK 3 L13: -0.0356 L23: 1.0023 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: -0.5425 S13: -0.2720 REMARK 3 S21: 0.0663 S22: 0.0701 S23: -0.1170 REMARK 3 S31: -0.0446 S32: 0.0965 S33: -0.0451 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 142 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4009 -25.5408 109.0839 REMARK 3 T TENSOR REMARK 3 T11: 0.0050 T22: 0.1527 REMARK 3 T33: 0.0147 T12: 0.0178 REMARK 3 T13: 0.0013 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 3.5927 L22: 1.6564 REMARK 3 L33: 1.4304 L12: 0.4192 REMARK 3 L13: -0.0279 L23: -0.1852 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: -0.4356 S13: -0.1399 REMARK 3 S21: -0.0254 S22: 0.0657 S23: 0.0897 REMARK 3 S31: -0.0468 S32: -0.0955 S33: 0.0393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 0.2M SODIUM NITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.20750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 ILE A 124 REMARK 465 LEU A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 GLY A 141 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 ALA A 257 REMARK 465 ASP A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 GLN B 1 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 ILE B 124 REMARK 465 LEU B 125 REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 GLY B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 GLY B 136 REMARK 465 SER B 137 REMARK 465 GLY B 138 REMARK 465 GLY B 139 REMARK 465 GLY B 140 REMARK 465 GLY B 141 REMARK 465 SER B 255 REMARK 465 GLY B 256 REMARK 465 ALA B 257 REMARK 465 ASP B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 99 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 99 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -49.12 114.27 REMARK 500 VAL A 104 -68.10 73.13 REMARK 500 ASN A 170 -96.87 -114.17 REMARK 500 ASN A 194 -45.79 70.06 REMARK 500 PHE B 29 -49.76 113.75 REMARK 500 VAL B 104 -68.56 73.37 REMARK 500 ASN B 170 -97.23 -113.24 REMARK 500 ASN B 194 -45.58 71.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 27 THR A 28 144.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GQ A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GQ B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J74 RELATED DB: PDB DBREF 5J75 A 1 264 PDB 5J75 5J75 1 264 DBREF 5J75 B 1 264 PDB 5J75 5J75 1 264 SEQRES 1 A 264 GLN VAL GLN LEU VAL GLU SER GLU ALA GLU VAL LYS LYS SEQRES 2 A 264 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 A 264 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 A 264 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY THR ILE SEQRES 5 A 264 PRO ILE PHE GLY THR ALA ASP TYR ALA GLN GLU PHE GLN SEQRES 6 A 264 GLY ARG VAL THR ILE THR THR ASP GLU SER THR SER THR SEQRES 7 A 264 ALA TYR MET GLU LEU SER GLY LEU ARG SER GLU ASP THR SEQRES 8 A 264 ALA VAL TYR TYR CYS VAL LEU LEU GLY THR THR MET VAL SEQRES 9 A 264 THR GLY HIS TYR PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 A 264 VAL THR VAL SER SER GLY ILE LEU GLY SER GLY GLY GLY SEQRES 11 A 264 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER ASN SEQRES 12 A 264 PHE MET LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 13 A 264 GLY GLN SER VAL THR ILE SER CYS SER GLY SER GLY SER SEQRES 14 A 264 ASN ILE GLY ASN ASN LYS VAL ASN TRP TYR GLN GLN LEU SEQRES 15 A 264 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN ASN SEQRES 16 A 264 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 17 A 264 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 18 A 264 GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 19 A 264 ASP ASP GLY LEU SER GLY TYR VAL PHE GLY THR GLY THR SEQRES 20 A 264 LYS LEU THR VAL LEU ALA ALA SER GLY ALA ASP HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS SEQRES 1 B 264 GLN VAL GLN LEU VAL GLU SER GLU ALA GLU VAL LYS LYS SEQRES 2 B 264 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 264 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 B 264 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY THR ILE SEQRES 5 B 264 PRO ILE PHE GLY THR ALA ASP TYR ALA GLN GLU PHE GLN SEQRES 6 B 264 GLY ARG VAL THR ILE THR THR ASP GLU SER THR SER THR SEQRES 7 B 264 ALA TYR MET GLU LEU SER GLY LEU ARG SER GLU ASP THR SEQRES 8 B 264 ALA VAL TYR TYR CYS VAL LEU LEU GLY THR THR MET VAL SEQRES 9 B 264 THR GLY HIS TYR PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 264 VAL THR VAL SER SER GLY ILE LEU GLY SER GLY GLY GLY SEQRES 11 B 264 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER ASN SEQRES 12 B 264 PHE MET LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 13 B 264 GLY GLN SER VAL THR ILE SER CYS SER GLY SER GLY SER SEQRES 14 B 264 ASN ILE GLY ASN ASN LYS VAL ASN TRP TYR GLN GLN LEU SEQRES 15 B 264 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN ASN SEQRES 16 B 264 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 17 B 264 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 18 B 264 GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 19 B 264 ASP ASP GLY LEU SER GLY TYR VAL PHE GLY THR GLY THR SEQRES 20 B 264 LYS LEU THR VAL LEU ALA ALA SER GLY ALA ASP HIS HIS SEQRES 21 B 264 HIS HIS HIS HIS HET PO4 A 301 5 HET PO4 A 302 5 HET 6GQ A 303 27 HET PO4 B 301 5 HET PO4 B 302 5 HET 6GQ B 303 27 HETNAM PO4 PHOSPHATE ION HETNAM 6GQ N,4-DIMETHYL-N-{2-OXO-2-[4-(PYRIDIN-2-YL)PIPERAZIN-1- HETNAM 2 6GQ YL]ETHYL}BENZENE-1-SULFONAMIDE FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 6GQ 2(C19 H24 N4 O3 S) FORMUL 9 HOH *65(H2 O) HELIX 1 AA1 GLN A 62 GLN A 65 5 4 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 GLN A 222 GLU A 226 5 5 HELIX 4 AA4 GLN B 62 GLN B 65 5 4 HELIX 5 AA5 ARG B 87 THR B 91 5 5 HELIX 6 AA6 GLN B 222 GLU B 226 5 5 SHEET 1 AA1 4 GLN A 3 GLU A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N VAL A 20 SHEET 4 AA1 4 VAL A 68 ASP A 73 -1 N THR A 69 O GLU A 82 SHEET 1 AA2 6 GLU A 10 LYS A 12 0 SHEET 2 AA2 6 THR A 116 VAL A 120 1 O THR A 119 N LYS A 12 SHEET 3 AA2 6 ALA A 92 THR A 101 -1 N ALA A 92 O VAL A 118 SHEET 4 AA2 6 TYR A 32 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLU A 46 ILE A 52 -1 O MET A 48 N TRP A 36 SHEET 6 AA2 6 THR A 57 TYR A 60 -1 O ASP A 59 N GLY A 50 SHEET 1 AA3 4 GLU A 10 LYS A 12 0 SHEET 2 AA3 4 THR A 116 VAL A 120 1 O THR A 119 N LYS A 12 SHEET 3 AA3 4 ALA A 92 THR A 101 -1 N ALA A 92 O VAL A 118 SHEET 4 AA3 4 TYR A 108 TRP A 112 -1 O TYR A 111 N LEU A 98 SHEET 1 AA4 5 SER A 151 GLY A 154 0 SHEET 2 AA4 5 THR A 247 VAL A 251 1 O LYS A 248 N ALA A 152 SHEET 3 AA4 5 ALA A 227 ASP A 235 -1 N ALA A 227 O LEU A 249 SHEET 4 AA4 5 ASN A 177 GLN A 181 -1 N GLN A 181 O ASP A 228 SHEET 5 AA4 5 LYS A 188 ILE A 191 -1 O LEU A 190 N TRP A 178 SHEET 1 AA5 4 SER A 151 GLY A 154 0 SHEET 2 AA5 4 THR A 247 VAL A 251 1 O LYS A 248 N ALA A 152 SHEET 3 AA5 4 ALA A 227 ASP A 235 -1 N ALA A 227 O LEU A 249 SHEET 4 AA5 4 GLY A 240 PHE A 243 -1 O VAL A 242 N ALA A 233 SHEET 1 AA6 3 VAL A 160 SER A 165 0 SHEET 2 AA6 3 SER A 213 ILE A 218 -1 O LEU A 216 N ILE A 162 SHEET 3 AA6 3 PHE A 205 SER A 210 -1 N SER A 206 O ALA A 217 SHEET 1 AA7 4 GLN B 3 GLU B 6 0 SHEET 2 AA7 4 VAL B 18 SER B 25 -1 O LYS B 23 N VAL B 5 SHEET 3 AA7 4 THR B 78 LEU B 83 -1 O MET B 81 N VAL B 20 SHEET 4 AA7 4 VAL B 68 ASP B 73 -1 N THR B 69 O GLU B 82 SHEET 1 AA8 6 GLU B 10 LYS B 12 0 SHEET 2 AA8 6 THR B 116 VAL B 120 1 O THR B 119 N LYS B 12 SHEET 3 AA8 6 ALA B 92 THR B 101 -1 N ALA B 92 O VAL B 118 SHEET 4 AA8 6 TYR B 32 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA8 6 GLU B 46 ILE B 52 -1 O MET B 48 N TRP B 36 SHEET 6 AA8 6 THR B 57 TYR B 60 -1 O ASP B 59 N GLY B 50 SHEET 1 AA9 4 GLU B 10 LYS B 12 0 SHEET 2 AA9 4 THR B 116 VAL B 120 1 O THR B 119 N LYS B 12 SHEET 3 AA9 4 ALA B 92 THR B 101 -1 N ALA B 92 O VAL B 118 SHEET 4 AA9 4 TYR B 108 TRP B 112 -1 O TYR B 111 N LEU B 98 SHEET 1 AB1 5 SER B 151 GLY B 154 0 SHEET 2 AB1 5 THR B 247 VAL B 251 1 O LYS B 248 N ALA B 152 SHEET 3 AB1 5 ALA B 227 ASP B 235 -1 N ALA B 227 O LEU B 249 SHEET 4 AB1 5 ASN B 177 GLN B 181 -1 N GLN B 181 O ASP B 228 SHEET 5 AB1 5 LYS B 188 ILE B 191 -1 O LEU B 190 N TRP B 178 SHEET 1 AB2 4 SER B 151 GLY B 154 0 SHEET 2 AB2 4 THR B 247 VAL B 251 1 O LYS B 248 N ALA B 152 SHEET 3 AB2 4 ALA B 227 ASP B 235 -1 N ALA B 227 O LEU B 249 SHEET 4 AB2 4 GLY B 240 PHE B 243 -1 O VAL B 242 N ALA B 233 SHEET 1 AB3 3 VAL B 160 SER B 165 0 SHEET 2 AB3 3 SER B 213 ILE B 218 -1 O LEU B 216 N ILE B 162 SHEET 3 AB3 3 PHE B 205 SER B 210 -1 N SER B 206 O ALA B 217 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.02 SSBOND 2 CYS A 164 CYS A 231 1555 1555 2.01 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.01 SSBOND 4 CYS B 164 CYS B 231 1555 1555 2.04 CISPEP 1 THR A 28 PHE A 29 0 2.98 CISPEP 2 SER B 25 GLY B 26 0 -11.06 CISPEP 3 THR B 28 PHE B 29 0 4.86 SITE 1 AC1 6 ARG A 38 GLN A 39 ALA A 40 GLN A 43 SITE 2 AC1 6 GLY A 44 GLU A 46 SITE 1 AC2 5 ASN A 173 ASN A 174 LYS A 175 ASN A 194 SITE 2 AC2 5 LYS A 209 SITE 1 AC3 13 SER A 35 TRP A 47 GLY A 50 THR A 51 SITE 2 AC3 13 THR A 57 ASP A 59 LEU A 99 TYR A 179 SITE 3 AC3 13 TYR A 241 PHE B 55 THR B 57 TRP B 234 SITE 4 AC3 13 6GQ B 303 SITE 1 AC4 6 ARG B 38 GLN B 39 ALA B 40 GLN B 43 SITE 2 AC4 6 GLY B 44 GLU B 46 SITE 1 AC5 5 ASN B 173 ASN B 174 LYS B 175 ASN B 194 SITE 2 AC5 5 LYS B 209 SITE 1 AC6 15 PHE A 55 THR A 57 TRP A 234 6GQ A 303 SITE 2 AC6 15 SER B 35 TRP B 47 GLY B 50 THR B 51 SITE 3 AC6 15 THR B 57 ASP B 59 LEU B 99 TYR B 108 SITE 4 AC6 15 TYR B 179 TYR B 241 HOH B 403 CRYST1 53.021 72.415 64.562 90.00 99.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018860 0.000000 0.003165 0.00000 SCALE2 0.000000 0.013809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015706 0.00000