HEADER OXIDOREDUCTASE 07-APR-16 5J7X TITLE BAEYER-VILLIGER MONOOXYGENASE BVMOAFL838 FROM ASPERGILLUS FLAVUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLANILINE MONOOXYGENASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FLAVUS; SOURCE 3 ORGANISM_TAXID: 5059; SOURCE 4 GENE: AFLA_016370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS BAEYER-VILLIGER MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.M.FERRONI,C.TOLMIE,M.S.SMIT,D.J.OPPERMAN REVDAT 3 10-JAN-24 5J7X 1 REMARK REVDAT 2 28-SEP-16 5J7X 1 REVDAT 1 10-AUG-16 5J7X 0 JRNL AUTH F.M.FERRONI,C.TOLMIE,M.S.SMIT,D.J.OPPERMAN JRNL TITL STRUCTURAL AND CATALYTIC CHARACTERIZATION OF A FUNGAL JRNL TITL 2 BAEYER-VILLIGER MONOOXYGENASE. JRNL REF PLOS ONE V. 11 60186 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27472055 JRNL DOI 10.1371/JOURNAL.PONE.0160186 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 55752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4419 ; 0.031 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4061 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6015 ; 2.707 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9349 ; 1.278 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 6.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;34.244 ;24.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 705 ;12.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.203 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4989 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1056 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2112 ; 1.956 ; 1.917 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2110 ; 1.953 ; 1.916 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2637 ; 2.854 ; 2.859 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 700 REMARK 3 ORIGIN FOR THE GROUP (A): 131.2430 196.1817 31.3771 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0095 REMARK 3 T33: 0.0351 T12: -0.0130 REMARK 3 T13: -0.0071 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.8679 L22: 0.2423 REMARK 3 L33: 0.5067 L12: -0.1307 REMARK 3 L13: 0.1475 L23: -0.0934 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: -0.0158 S13: 0.1192 REMARK 3 S21: -0.0591 S22: -0.0030 S23: -0.0582 REMARK 3 S31: -0.0197 S32: 0.0186 S33: 0.0273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5J7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9174 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 1W4X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 9, 1.8 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.83500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.83500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.75500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.83500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.75500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 230 REMARK 465 TYR A 231 REMARK 465 GLN A 232 REMARK 465 VAL A 233 REMARK 465 LYS A 234 REMARK 465 ASP A 235 REMARK 465 LYS A 236 REMARK 465 GLY A 237 REMARK 465 GLU A 238 REMARK 465 TYR A 239 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 793 O HOH A 818 2.05 REMARK 500 O HOH A 923 O HOH A 1010 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 716 O HOH A 716 2775 0.94 REMARK 500 O HOH A 1037 O HOH A 1037 3756 1.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 45 CB GLU A 45 CG 0.124 REMARK 500 GLU A 45 CG GLU A 45 CD 0.096 REMARK 500 SER A 46 CB SER A 46 OG 0.093 REMARK 500 ARG A 61 CZ ARG A 61 NH2 -0.084 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.069 REMARK 500 GLU A 75 CD GLU A 75 OE2 0.096 REMARK 500 ARG A 114 CZ ARG A 114 NH2 -0.080 REMARK 500 TYR A 141 CE1 TYR A 141 CZ -0.109 REMARK 500 GLY A 147 CA GLY A 147 C 0.100 REMARK 500 SER A 162 CB SER A 162 OG 0.111 REMARK 500 GLU A 269 CD GLU A 269 OE1 0.148 REMARK 500 TYR A 278 CG TYR A 278 CD2 -0.127 REMARK 500 TYR A 278 CZ TYR A 278 OH 0.150 REMARK 500 TYR A 331 CZ TYR A 331 OH 0.117 REMARK 500 GLY A 389 CA GLY A 389 C 0.137 REMARK 500 GLU A 412 CD GLU A 412 OE2 0.068 REMARK 500 TYR A 436 CG TYR A 436 CD2 0.082 REMARK 500 GLN A 439 C GLN A 439 O 0.136 REMARK 500 GLU A 480 CD GLU A 480 OE2 -0.074 REMARK 500 GLU A 486 CD GLU A 486 OE2 0.111 REMARK 500 ARG A 526 CZ ARG A 526 NH1 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 LYS A 30 CD - CE - NZ ANGL. DEV. = 19.9 DEGREES REMARK 500 GLU A 75 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLU A 269 CG - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 284 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 292 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU A 297 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP A 317 CB - CG - OD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 317 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 328 OE1 - CD - OE2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 337 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 382 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 411 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 411 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLU A 412 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 456 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 GLU A 480 OE1 - CD - OE2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ASP A 500 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 MET A 504 CG - SD - CE ANGL. DEV. = -27.4 DEGREES REMARK 500 ARG A 526 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 526 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 536 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 45 -155.86 -110.32 REMARK 500 ASP A 104 68.62 67.82 REMARK 500 ALA A 145 53.78 -117.80 REMARK 500 ALA A 171 0.57 -63.99 REMARK 500 HIS A 172 71.93 -170.44 REMARK 500 ALA A 176 -56.98 104.07 REMARK 500 GLN A 342 -63.86 -106.28 REMARK 500 ALA A 387 63.79 -104.97 REMARK 500 SER A 437 -159.01 -138.06 REMARK 500 THR A 442 -81.09 -0.58 REMARK 500 GLU A 535 51.73 -116.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAM A 603 DBREF 5J7X A 1 543 UNP B8N653 B8N653_ASPFN 1 543 SEQADV 5J7X HIS A 544 UNP B8N653 EXPRESSION TAG SEQADV 5J7X HIS A 545 UNP B8N653 EXPRESSION TAG SEQADV 5J7X HIS A 546 UNP B8N653 EXPRESSION TAG SEQADV 5J7X HIS A 547 UNP B8N653 EXPRESSION TAG SEQADV 5J7X HIS A 548 UNP B8N653 EXPRESSION TAG SEQADV 5J7X HIS A 549 UNP B8N653 EXPRESSION TAG SEQRES 1 A 549 MET ASN GLY THR GLN ALA SER ASN GLY VAL LEU HIS LEU SEQRES 2 A 549 ASP ALA LEU ILE ILE GLY SER GLY PHE SER GLY ILE TYR SEQRES 3 A 549 LEU LEU HIS LYS LEU ARG ASP GLU LEU LYS LEU LYS VAL SEQRES 4 A 549 LYS ILE PHE GLU ALA GLU SER ASP ILE GLY GLY THR TRP SEQRES 5 A 549 ASN ASN ASN ARG TYR PRO GLY ALA ARG VAL ASP CYS PRO SEQRES 6 A 549 VAL PRO PHE TYR ALA TYR SER LEU PRO GLU VAL TRP GLN SEQRES 7 A 549 SER TRP ASN TRP THR GLU LEU TYR PRO ASN GLN LYS GLU SEQRES 8 A 549 ILE LYS SER TYR PHE ASP HIS VAL ASP ARG VAL LEU ASP SEQRES 9 A 549 VAL ARG LYS ASP CYS LEU PHE HIS SER ARG VAL ASN GLU SEQRES 10 A 549 GLY THR PHE ASP GLU ALA THR GLY ARG TRP THR VAL TRP SEQRES 11 A 549 THR THR ASP GLY LYS VAL ALA THR ALA LYS TYR LEU LEU SEQRES 12 A 549 VAL ALA VAL GLY PHE ALA SER LYS SER TYR LEU PRO ASP SEQRES 13 A 549 TRP LYS GLY LEU ASP SER PHE LYS GLY THR ILE TYR HIS SEQRES 14 A 549 SER ALA HIS TRP PRO GLU ALA GLU GLU ILE SER VAL LYS SEQRES 15 A 549 GLY LYS LYS VAL ALA VAL ILE GLY THR GLY SER THR GLY SEQRES 16 A 549 ILE GLN ILE PHE GLN GLU TRP ALA ARG GLU ALA GLU GLU SEQRES 17 A 549 ALA PHE LEU PHE GLN ARG THR PRO ASN LEU CYS LEU PRO SEQRES 18 A 549 MET ARG GLN GLN GLU LEU HIS ALA GLY TYR GLN VAL LYS SEQRES 19 A 549 ASP LYS GLY GLU TYR ALA ASP TYR LEU ALA GLU CYS ALA SEQRES 20 A 549 LEU THR PHE GLY GLY LEU GLU TYR GLN GLN THR PRO LYS SEQRES 21 A 549 ASN THR PHE ASP ALA SER GLU GLU GLU ARG GLU ALA PHE SEQRES 22 A 549 TRP GLU ASP LEU TYR GLN MET GLY GLY PHE ARG PHE TRP SEQRES 23 A 549 GLN ASN ASN TYR GLN ASP LEU LEU THR SER LEU ASP ALA SEQRES 24 A 549 ASN ARG GLU ALA TYR ASN PHE TRP ALA ARG LYS THR ARG SEQRES 25 A 549 ALA ARG ILE GLN ASP PRO LYS LYS ARG ASP LEU LEU ALA SEQRES 26 A 549 PRO LEU GLU PRO PRO TYR PRO PHE GLY THR LYS ARG PRO SEQRES 27 A 549 SER LEU GLU GLN ASP PHE TYR GLU GLN PHE ASN LYS SER SEQRES 28 A 549 ASN VAL HIS ILE VAL ASP THR LYS SER GLN PRO ILE VAL SEQRES 29 A 549 GLY VAL THR PRO THR GLY ILE VAL THR ALA ASP GLU LYS SEQRES 30 A 549 VAL HIS GLU VAL ASP ILE ILE ALA VAL ALA THR GLY PHE SEQRES 31 A 549 ASP ALA VAL THR GLY GLY LEU LEU ARG LEU GLY LEU LYS SEQRES 32 A 549 ASP VAL ASN GLY VAL GLY LEU ASP GLU ARG TRP LYS ASP SEQRES 33 A 549 GLY MET SER THR TYR LEU GLY MET ALA ILE SER GLY PHE SEQRES 34 A 549 PRO ASN MET PHE LEU PRO TYR SER LEU GLN ALA PRO THR SEQRES 35 A 549 ALA PHE ALA ASN GLY PRO THR LEU ILE GLU LEU GLN GLY SEQRES 36 A 549 ASP TRP ILE THR SER LEU ILE ARG LYS MET GLU MET GLU SEQRES 37 A 549 ASN VAL GLN SER VAL THR ALA THR PRO HIS ALA GLU SER SEQRES 38 A 549 ALA TRP ASN ASP GLU VAL ASN MET ILE ALA ASN LYS THR SEQRES 39 A 549 LEU LEU PRO LEU THR ASP SER TRP TYR MET GLY SER ASN SEQRES 40 A 549 ILE PRO GLY LYS PRO VAL GLN SER LEU ASN TYR LEU GLY SEQRES 41 A 549 GLY LEU PRO THR TYR ARG GLU ARG CYS ALA LYS VAL LEU SEQRES 42 A 549 ASP GLU ASP PHE PHE GLY PHE ALA LYS ALA HIS HIS HIS SEQRES 43 A 549 HIS HIS HIS HET FAD A 601 53 HET SO4 A 602 5 HET TAM A 603 11 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 SO4 O4 S 2- FORMUL 4 TAM C7 H17 N O3 FORMUL 5 HOH *361(H2 O) HELIX 1 AA1 GLY A 21 GLU A 34 1 14 HELIX 2 AA2 GLY A 50 ASN A 55 1 6 HELIX 3 AA3 LEU A 73 GLN A 78 1 6 HELIX 4 AA4 ASN A 88 ASP A 104 1 17 HELIX 5 AA5 VAL A 105 LYS A 107 5 3 HELIX 6 AA6 GLY A 159 PHE A 163 5 5 HELIX 7 AA7 GLY A 192 ALA A 206 1 15 HELIX 8 AA8 ASP A 241 ALA A 247 1 7 HELIX 9 AA9 ASN A 261 ALA A 265 5 5 HELIX 10 AB1 SER A 266 GLY A 281 1 16 HELIX 11 AB2 PHE A 283 ASN A 288 1 6 HELIX 12 AB3 SER A 296 ARG A 314 1 19 HELIX 13 AB4 ASP A 317 ALA A 325 1 9 HELIX 14 AB5 ASP A 343 PHE A 348 1 6 HELIX 15 AB6 VAL A 393 ARG A 399 1 7 HELIX 16 AB7 GLY A 409 TRP A 414 1 6 HELIX 17 AB8 PRO A 441 ALA A 445 5 5 HELIX 18 AB9 ASN A 446 GLU A 468 1 23 HELIX 19 AC1 THR A 476 LYS A 493 1 18 HELIX 20 AC2 THR A 494 THR A 499 5 6 HELIX 21 AC3 ASP A 500 ILE A 508 1 9 HELIX 22 AC4 GLY A 521 GLU A 535 1 15 SHEET 1 AA1 6 CYS A 109 LEU A 110 0 SHEET 2 AA1 6 VAL A 39 PHE A 42 1 N ILE A 41 O LEU A 110 SHEET 3 AA1 6 LEU A 11 ILE A 18 1 N ILE A 17 O PHE A 42 SHEET 4 AA1 6 VAL A 136 VAL A 144 1 O LEU A 143 N ILE A 18 SHEET 5 AA1 6 ARG A 126 THR A 131 -1 N TRP A 127 O ALA A 139 SHEET 6 AA1 6 VAL A 115 ASP A 121 -1 N ASP A 121 O ARG A 126 SHEET 1 AA2 5 CYS A 109 LEU A 110 0 SHEET 2 AA2 5 VAL A 39 PHE A 42 1 N ILE A 41 O LEU A 110 SHEET 3 AA2 5 LEU A 11 ILE A 18 1 N ILE A 17 O PHE A 42 SHEET 4 AA2 5 VAL A 136 VAL A 144 1 O LEU A 143 N ILE A 18 SHEET 5 AA2 5 MET A 432 PHE A 433 1 O PHE A 433 N VAL A 144 SHEET 1 AA3 5 THR A 166 HIS A 169 0 SHEET 2 AA3 5 ILE A 383 VAL A 386 1 O ILE A 384 N TYR A 168 SHEET 3 AA3 5 LYS A 185 ILE A 189 1 N ILE A 189 O ALA A 385 SHEET 4 AA3 5 GLU A 208 GLN A 213 1 O PHE A 212 N VAL A 188 SHEET 5 AA3 5 VAL A 353 ASP A 357 1 O VAL A 356 N LEU A 211 SHEET 1 AA4 2 LEU A 220 PRO A 221 0 SHEET 2 AA4 2 LEU A 340 GLU A 341 1 O GLU A 341 N LEU A 220 SHEET 1 AA5 3 ILE A 363 THR A 367 0 SHEET 2 AA5 3 GLY A 370 THR A 373 -1 O VAL A 372 N GLY A 365 SHEET 3 AA5 3 VAL A 378 GLU A 380 -1 O HIS A 379 N ILE A 371 SHEET 1 AA6 2 VAL A 470 ALA A 475 0 SHEET 2 AA6 2 PHE A 540 HIS A 544 -1 O ALA A 541 N THR A 474 CISPEP 1 VAL A 66 PRO A 67 0 10.67 SITE 1 AC1 41 ILE A 18 GLY A 19 GLY A 21 PHE A 22 SITE 2 AC1 41 SER A 23 PHE A 42 GLU A 43 ALA A 44 SITE 3 AC1 41 GLY A 50 THR A 51 TRP A 52 ASN A 54 SITE 4 AC1 41 TYR A 57 ARG A 61 VAL A 62 ASP A 63 SITE 5 AC1 41 CYS A 64 TYR A 69 SER A 113 ARG A 114 SITE 6 AC1 41 VAL A 115 ALA A 145 VAL A 146 GLY A 147 SITE 7 AC1 41 ARG A 337 PHE A 390 LEU A 400 TYR A 436 SITE 8 AC1 41 ALA A 445 ASN A 446 GLY A 447 HOH A 740 SITE 9 AC1 41 HOH A 752 HOH A 768 HOH A 801 HOH A 816 SITE 10 AC1 41 HOH A 818 HOH A 878 HOH A 917 HOH A 918 SITE 11 AC1 41 HOH A 922 SITE 1 AC2 7 GLY A 192 SER A 193 THR A 194 GLY A 389 SITE 2 AC2 7 PHE A 390 HOH A 726 HOH A 898 SITE 1 AC3 7 THR A 191 GLN A 213 ARG A 214 THR A 215 SITE 2 AC3 7 MET A 504 LYS A 511 HOH A 806 CRYST1 109.670 177.510 76.370 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013094 0.00000