HEADER TRANSFERASE 08-APR-16 5J8Q TITLE CRYSTAL STRUCTURE OF THE CYSTEINE DESULFURASE SUFS OF BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE SUFS; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUFS, CSD, YURW, BSU32690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYSTEINE DESULFURASE, IRON SULFUR CLUSTER, SUF-SYSTEM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.ALTEGOER,G.BANGE REVDAT 3 10-JAN-24 5J8Q 1 LINK REVDAT 2 15-JAN-20 5J8Q 1 ATOM REVDAT 1 27-JUL-16 5J8Q 0 JRNL AUTH B.BLAUENBURG,A.MIELCAREK,F.ALTEGOER,C.D.FAGE,U.LINNE, JRNL AUTH 2 G.BANGE,M.A.MARAHIEL JRNL TITL CRYSTAL STRUCTURE OF BACILLUS SUBTILIS CYSTEINE DESULFURASE JRNL TITL 2 SUFS AND ITS DYNAMIC INTERACTION WITH FRATAXIN AND SCAFFOLD JRNL TITL 3 PROTEIN SUFU. JRNL REF PLOS ONE V. 11 58749 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27382962 JRNL DOI 10.1371/JOURNAL.PONE.0158749 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 68544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3344 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3165 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4545 ; 1.584 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7281 ; 1.009 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 5.650 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.461 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;12.664 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3802 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 763 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 2.056 ; 2.537 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1664 ; 2.040 ; 2.535 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2081 ; 2.385 ; 3.807 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2082 ; 2.388 ; 3.809 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1678 ; 3.289 ; 3.102 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1678 ; 3.288 ; 3.101 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2462 ; 3.954 ; 4.464 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3932 ; 4.498 ;22.472 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3803 ; 3.874 ;21.775 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6508 ; 3.456 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 117 ;34.795 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6610 ;12.302 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.702 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.07071 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4W91 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 50 % (V/V) PEG REMARK 280 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.51433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.02867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.02867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.51433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.02867 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 820 O HOH A 837 2.05 REMARK 500 O HOH A 795 O HOH A 832 2.10 REMARK 500 O HOH A 812 O HOH A 837 2.14 REMARK 500 NZ LYS A 224 C4 PLP A 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 869 O HOH A 869 5555 0.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 183 CG GLU A 183 CD 0.099 REMARK 500 GLU A 183 CD GLU A 183 OE1 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 356 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 356 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 18.62 -140.68 REMARK 500 HIS A 53 119.47 109.70 REMARK 500 ILE A 125 -55.57 -126.81 REMARK 500 GLU A 252 -30.69 79.85 REMARK 500 ASP A 255 -63.00 -106.77 REMARK 500 ALA A 362 59.14 -144.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALA A 502 DBREF 5J8Q A 1 406 UNP O32164 SUFS_BACSU 1 406 SEQADV 5J8Q SER A 407 UNP O32164 EXPRESSION TAG SEQADV 5J8Q GLY A 408 UNP O32164 EXPRESSION TAG SEQADV 5J8Q HIS A 409 UNP O32164 EXPRESSION TAG SEQADV 5J8Q HIS A 410 UNP O32164 EXPRESSION TAG SEQADV 5J8Q HIS A 411 UNP O32164 EXPRESSION TAG SEQADV 5J8Q HIS A 412 UNP O32164 EXPRESSION TAG SEQADV 5J8Q HIS A 413 UNP O32164 EXPRESSION TAG SEQADV 5J8Q HIS A 414 UNP O32164 EXPRESSION TAG SEQRES 1 A 414 MET ASN ILE THR ASP ILE ARG GLU GLN PHE PRO ILE LEU SEQRES 2 A 414 HIS GLN GLN VAL ASN GLY HIS ASP LEU VAL TYR LEU ASP SEQRES 3 A 414 SER ALA ALA THR SER GLN LYS PRO ARG ALA VAL ILE GLU SEQRES 4 A 414 THR LEU ASP LYS TYR TYR ASN GLN TYR ASN SER ASN VAL SEQRES 5 A 414 HIS ARG GLY VAL HIS THR LEU GLY THR ARG ALA THR ASP SEQRES 6 A 414 GLY TYR GLU GLY ALA ARG GLU LYS VAL ARG LYS PHE ILE SEQRES 7 A 414 ASN ALA LYS SER MET ALA GLU ILE ILE PHE THR LYS GLY SEQRES 8 A 414 THR THR THR SER LEU ASN MET VAL ALA LEU SER TYR ALA SEQRES 9 A 414 ARG ALA ASN LEU LYS PRO GLY ASP GLU VAL VAL ILE THR SEQRES 10 A 414 TYR MET GLU HIS HIS ALA ASN ILE ILE PRO TRP GLN GLN SEQRES 11 A 414 ALA VAL LYS ALA THR GLY ALA THR LEU LYS TYR ILE PRO SEQRES 12 A 414 LEU GLN GLU ASP GLY THR ILE SER LEU GLU ASP VAL ARG SEQRES 13 A 414 GLU THR VAL THR SER ASN THR LYS ILE VAL ALA VAL SER SEQRES 14 A 414 HIS VAL SER ASN VAL LEU GLY THR VAL ASN PRO ILE LYS SEQRES 15 A 414 GLU MET ALA LYS ILE ALA HIS ASP ASN GLY ALA VAL ILE SEQRES 16 A 414 VAL VAL ASP GLY ALA GLN SER THR PRO HIS MET LYS ILE SEQRES 17 A 414 ASP VAL GLN ASP LEU ASP CYS ASP PHE PHE ALA LEU SER SEQRES 18 A 414 SER HIS LYS MET CYS GLY PRO THR GLY VAL GLY VAL LEU SEQRES 19 A 414 TYR GLY LYS LYS ALA LEU LEU GLU ASN MET GLU PRO ALA SEQRES 20 A 414 GLU PHE GLY GLY GLU MET ILE ASP PHE VAL GLY LEU TYR SEQRES 21 A 414 GLU SER THR TRP LYS GLU LEU PRO TRP LYS PHE GLU ALA SEQRES 22 A 414 GLY THR PRO ILE ILE ALA GLY ALA ILE GLY LEU GLY ALA SEQRES 23 A 414 ALA ILE ASP PHE LEU GLU GLU ILE GLY LEU ASP GLU ILE SEQRES 24 A 414 SER ARG HIS GLU HIS LYS LEU ALA ALA TYR ALA LEU GLU SEQRES 25 A 414 ARG PHE ARG GLN LEU ASP GLY VAL THR VAL TYR GLY PRO SEQRES 26 A 414 GLU GLU ARG ALA GLY LEU VAL THR PHE ASN LEU ASP ASP SEQRES 27 A 414 VAL HIS PRO HIS ASP VAL ALA THR VAL LEU ASP ALA GLU SEQRES 28 A 414 GLY ILE ALA VAL ARG ALA GLY HIS HIS CSS ALA GLN PRO SEQRES 29 A 414 LEU MET LYS TRP LEU ASP VAL THR ALA THR ALA ARG ALA SEQRES 30 A 414 SER PHE TYR LEU TYR ASN THR GLU GLU GLU ILE ASP LYS SEQRES 31 A 414 LEU VAL GLU ALA LEU GLN LYS THR LYS GLU TYR PHE THR SEQRES 32 A 414 ASN VAL PHE SER GLY HIS HIS HIS HIS HIS HIS MODRES 5J8Q CSS A 361 CYS MODIFIED RESIDUE HET CSS A 361 7 HET PLP A 501 15 HET ALA A 502 6 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM ALA ALANINE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 ALA C3 H7 N O2 FORMUL 4 HOH *293(H2 O) HELIX 1 AA1 ASN A 2 GLU A 8 1 7 HELIX 2 AA2 GLN A 9 HIS A 14 5 6 HELIX 3 AA3 PRO A 34 TYR A 48 1 15 HELIX 4 AA4 HIS A 57 ASN A 79 1 23 HELIX 5 AA5 SER A 82 ALA A 84 5 3 HELIX 6 AA6 GLY A 91 TYR A 103 1 13 HELIX 7 AA7 TYR A 103 LEU A 108 1 6 HELIX 8 AA8 HIS A 121 ASN A 124 5 4 HELIX 9 AA9 ILE A 125 GLY A 136 1 12 HELIX 10 AB1 SER A 151 VAL A 159 1 9 HELIX 11 AB2 PRO A 180 ASN A 191 1 12 HELIX 12 AB3 ASP A 209 ASP A 214 1 6 HELIX 13 AB4 HIS A 223 MET A 225 5 3 HELIX 14 AB5 LYS A 237 MET A 244 1 8 HELIX 15 AB6 PRO A 268 GLU A 272 5 5 HELIX 16 AB7 ILE A 277 GLY A 295 1 19 HELIX 17 AB8 GLY A 295 GLN A 316 1 22 HELIX 18 AB9 HIS A 340 GLU A 351 1 12 HELIX 19 AC1 ALA A 362 ASP A 370 1 9 HELIX 20 AC2 THR A 384 HIS A 412 1 29 SHEET 1 AA1 2 GLN A 16 VAL A 17 0 SHEET 2 AA1 2 HIS A 20 ASP A 21 -1 O HIS A 20 N VAL A 17 SHEET 1 AA2 2 VAL A 23 TYR A 24 0 SHEET 2 AA2 2 ILE A 353 ALA A 354 1 O ALA A 354 N VAL A 23 SHEET 1 AA3 7 ILE A 86 THR A 89 0 SHEET 2 AA3 7 GLY A 232 GLY A 236 -1 O GLY A 232 N THR A 89 SHEET 3 AA3 7 PHE A 217 SER A 221 -1 N PHE A 218 O TYR A 235 SHEET 4 AA3 7 VAL A 194 ASP A 198 1 N VAL A 197 O PHE A 217 SHEET 5 AA3 7 THR A 163 SER A 169 1 N VAL A 166 O VAL A 196 SHEET 6 AA3 7 GLU A 113 THR A 117 1 N VAL A 115 O ILE A 165 SHEET 7 AA3 7 THR A 138 ILE A 142 1 O LYS A 140 N ILE A 116 SHEET 1 AA4 2 ILE A 254 VAL A 257 0 SHEET 2 AA4 2 SER A 262 TRP A 264 -1 O THR A 263 N ASP A 255 SHEET 1 AA5 4 VAL A 320 VAL A 322 0 SHEET 2 AA5 4 LEU A 331 LEU A 336 -1 O ASN A 335 N THR A 321 SHEET 3 AA5 4 THR A 374 SER A 378 -1 O ALA A 375 N PHE A 334 SHEET 4 AA5 4 ARG A 356 GLY A 358 -1 N GLY A 358 O THR A 374 LINK NZ LYS A 224 C4A PLP A 501 1555 1555 1.29 LINK C HIS A 360 N CSS A 361 1555 1555 1.31 LINK C CSS A 361 N ALA A 362 1555 1555 1.33 CISPEP 1 LEU A 267 PRO A 268 0 0.29 SITE 1 AC1 14 THR A 92 THR A 93 HIS A 121 ASN A 173 SITE 2 AC1 14 ASP A 198 ALA A 200 GLN A 201 SER A 221 SITE 3 AC1 14 HIS A 223 LYS A 224 THR A 275 ALA A 502 SITE 4 AC1 14 HOH A 660 HOH A 678 SITE 1 AC2 8 ALA A 28 ALA A 29 HIS A 121 ASN A 173 SITE 2 AC2 8 ARG A 356 HIS A 360 ARG A 376 PLP A 501 CRYST1 93.191 93.191 130.543 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010731 0.006195 0.000000 0.00000 SCALE2 0.000000 0.012391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007660 0.00000