HEADER HYDROLASE 08-APR-16 5J8X
TITLE CRYSTAL STRUCTURE OF E. COLI PBP5 WITH 2C
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACA;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DD-PEPTIDASE,BETA-LACTAMASE,PENICILLIN-BINDING PROTEIN 5,
COMPND 5 PBP-5;
COMPND 6 EC: 3.4.16.4,3.5.2.6;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 83333;
SOURCE 4 STRAIN: K12;
SOURCE 5 GENE: DACA, PFV, B0632, JW0627;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDACA NHIS
KEYWDS ANTIBIOTIC RESISTANCE, PENICILLIN BINDING PROTEIN, BORONIC ACID,
KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.BREM,R.CAIN,M.A.MCDONOUGH,I.J.CLIFTON,C.W.G.FISHWICK,C.J.SCHOFIELD
REVDAT 5 23-OCT-24 5J8X 1 REMARK
REVDAT 4 10-JAN-24 5J8X 1 REMARK
REVDAT 3 30-OCT-19 5J8X 1 COMPND HETNAM FORMUL
REVDAT 2 28-SEP-16 5J8X 1
REVDAT 1 17-AUG-16 5J8X 0
JRNL AUTH J.BREM,R.CAIN,S.CAHILL,M.A.MCDONOUGH,I.J.CLIFTON,
JRNL AUTH 2 J.C.JIMENEZ-CASTELLANOS,M.B.AVISON,J.SPENCER,C.W.FISHWICK,
JRNL AUTH 3 C.J.SCHOFIELD
JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE,
JRNL TITL 2 SERINE-BETA-LACTAMASE AND PENICILLIN-BINDING PROTEIN
JRNL TITL 3 INHIBITION BY CYCLIC BORONATES.
JRNL REF NAT COMMUN V. 7 12406 2016
JRNL REFN ESSN 2041-1723
JRNL PMID 27499424
JRNL DOI 10.1038/NCOMMS12406
REMARK 2
REMARK 2 RESOLUTION. 2.53 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 14959
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.203
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1496
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 28.4988 - 5.6046 1.00 1321 147 0.1891 0.2342
REMARK 3 2 5.6046 - 4.4540 1.00 1255 140 0.1683 0.1981
REMARK 3 3 4.4540 - 3.8926 1.00 1240 137 0.1621 0.2062
REMARK 3 4 3.8926 - 3.5374 1.00 1232 138 0.1850 0.1971
REMARK 3 5 3.5374 - 3.2843 1.00 1216 135 0.2137 0.2233
REMARK 3 6 3.2843 - 3.0909 1.00 1199 132 0.2343 0.2685
REMARK 3 7 3.0909 - 2.9363 1.00 1218 136 0.2336 0.2729
REMARK 3 8 2.9363 - 2.8086 1.00 1192 133 0.2357 0.2899
REMARK 3 9 2.8086 - 2.7005 1.00 1229 135 0.2508 0.2685
REMARK 3 10 2.7005 - 2.6074 1.00 1198 134 0.2596 0.2988
REMARK 3 11 2.6074 - 2.5300 0.97 1163 129 0.2904 0.3391
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.180
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 46.34
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.19
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 2620
REMARK 3 ANGLE : 0.555 3558
REMARK 3 CHIRALITY : 0.041 400
REMARK 3 PLANARITY : 0.003 468
REMARK 3 DIHEDRAL : 14.436 1545
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 60 )
REMARK 3 ORIGIN FOR THE GROUP (A): 26.1175 7.1185 291.8553
REMARK 3 T TENSOR
REMARK 3 T11: 0.2841 T22: 0.3159
REMARK 3 T33: 0.2672 T12: 0.0560
REMARK 3 T13: 0.0073 T23: -0.0717
REMARK 3 L TENSOR
REMARK 3 L11: 5.8244 L22: 2.0391
REMARK 3 L33: 3.5250 L12: 0.3015
REMARK 3 L13: -0.9141 L23: -0.4067
REMARK 3 S TENSOR
REMARK 3 S11: -0.0627 S12: 0.7402 S13: -0.5090
REMARK 3 S21: -0.1113 S22: -0.0320 S23: -0.1246
REMARK 3 S31: 0.0755 S32: 0.1683 S33: 0.0700
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 95 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.0952 16.9629 302.7943
REMARK 3 T TENSOR
REMARK 3 T11: 0.3947 T22: 0.8517
REMARK 3 T33: 0.5377 T12: 0.1059
REMARK 3 T13: -0.0377 T23: -0.0122
REMARK 3 L TENSOR
REMARK 3 L11: 6.4657 L22: 4.4427
REMARK 3 L33: 9.7717 L12: -0.7718
REMARK 3 L13: -0.5746 L23: -2.1525
REMARK 3 S TENSOR
REMARK 3 S11: 0.0738 S12: -0.4416 S13: 0.1979
REMARK 3 S21: -0.0761 S22: -0.3027 S23: 0.4185
REMARK 3 S31: 0.0579 S32: -1.1061 S33: 0.1972
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 175 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.9580 7.6548 294.3877
REMARK 3 T TENSOR
REMARK 3 T11: 0.3166 T22: 0.3909
REMARK 3 T33: 0.3605 T12: -0.0167
REMARK 3 T13: -0.0137 T23: -0.0646
REMARK 3 L TENSOR
REMARK 3 L11: 6.3454 L22: 1.4668
REMARK 3 L33: 3.9624 L12: -0.4076
REMARK 3 L13: -1.3391 L23: -0.4632
REMARK 3 S TENSOR
REMARK 3 S11: -0.0314 S12: 0.6168 S13: -0.4112
REMARK 3 S21: -0.0052 S22: -0.0347 S23: 0.2513
REMARK 3 S31: 0.1467 S32: -0.6464 S33: 0.0865
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 246 )
REMARK 3 ORIGIN FOR THE GROUP (A): 22.8554 15.0632 301.4103
REMARK 3 T TENSOR
REMARK 3 T11: 0.2774 T22: 0.2514
REMARK 3 T33: 0.2789 T12: 0.0149
REMARK 3 T13: -0.0150 T23: 0.0076
REMARK 3 L TENSOR
REMARK 3 L11: 5.3619 L22: 3.7534
REMARK 3 L33: 4.6684 L12: -0.3867
REMARK 3 L13: -0.6701 L23: 0.9759
REMARK 3 S TENSOR
REMARK 3 S11: 0.0847 S12: -0.1339 S13: 0.2066
REMARK 3 S21: -0.0404 S22: 0.0048 S23: 0.0544
REMARK 3 S31: -0.1011 S32: 0.0414 S33: -0.1228
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 266 )
REMARK 3 ORIGIN FOR THE GROUP (A): 36.6102 12.7516 295.2966
REMARK 3 T TENSOR
REMARK 3 T11: 0.3871 T22: 0.4504
REMARK 3 T33: 0.3265 T12: -0.0283
REMARK 3 T13: -0.0482 T23: -0.0604
REMARK 3 L TENSOR
REMARK 3 L11: 8.4636 L22: 3.5469
REMARK 3 L33: 6.7838 L12: 0.8967
REMARK 3 L13: -3.1323 L23: -0.4749
REMARK 3 S TENSOR
REMARK 3 S11: 0.0298 S12: -0.1925 S13: -0.6714
REMARK 3 S21: 0.0981 S22: -0.3004 S23: -0.6574
REMARK 3 S31: -0.5028 S32: 1.4256 S33: 0.0646
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 358 )
REMARK 3 ORIGIN FOR THE GROUP (A): 32.6351 21.8112 262.2344
REMARK 3 T TENSOR
REMARK 3 T11: 0.8398 T22: 0.5707
REMARK 3 T33: 0.4778 T12: -0.0986
REMARK 3 T13: 0.0476 T23: 0.0261
REMARK 3 L TENSOR
REMARK 3 L11: 1.0919 L22: -0.0573
REMARK 3 L33: 5.6203 L12: -1.4238
REMARK 3 L13: 2.5404 L23: -1.3292
REMARK 3 S TENSOR
REMARK 3 S11: -0.1824 S12: -0.0451 S13: -0.0145
REMARK 3 S21: 0.3717 S22: 0.1240 S23: 0.2432
REMARK 3 S31: -1.2369 S32: 0.4562 S33: 0.1423
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5J8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-16.
REMARK 100 THE DEPOSITION ID IS D_1000220142.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14992
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530
REMARK 200 RESOLUTION RANGE LOW (A) : 28.497
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 200 DATA REDUNDANCY : 6.400
REMARK 200 R MERGE (I) : 0.09800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.59300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.790
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1NZO
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 10% 2-PROPANOL,
REMARK 280 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 X,-Y,-Z
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 -X,-Y+1/2,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.80300
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.21500
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.80300
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.21500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 15730 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -22
REMARK 465 GLY A -21
REMARK 465 SER A -20
REMARK 465 SER A -19
REMARK 465 HIS A -18
REMARK 465 HIS A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 SER A -12
REMARK 465 SER A -11
REMARK 465 GLY A -10
REMARK 465 LEU A -9
REMARK 465 VAL A -8
REMARK 465 PRO A -7
REMARK 465 ARG A -6
REMARK 465 GLY A -5
REMARK 465 SER A -4
REMARK 465 HIS A -3
REMARK 465 MET A -2
REMARK 465 ALA A -1
REMARK 465 SER A 0
REMARK 465 ASP A 1
REMARK 465 ASP A 2
REMARK 465 LEU A 3
REMARK 465 ASP A 74
REMARK 465 ALA A 75
REMARK 465 TRP A 76
REMARK 465 ALA A 77
REMARK 465 THR A 78
REMARK 465 GLY A 79
REMARK 465 ASN A 80
REMARK 465 PRO A 81
REMARK 465 VAL A 82
REMARK 465 PHE A 83
REMARK 465 LYS A 84
REMARK 465 GLY A 85
REMARK 465 SER A 86
REMARK 465 SER A 87
REMARK 465 LEU A 88
REMARK 465 GLY A 359
REMARK 465 LYS A 360
REMARK 465 ILE A 361
REMARK 465 ILE A 362
REMARK 465 ASP A 363
REMARK 465 CYS A 364
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ILE A 5 CG1 CG2 CD1
REMARK 470 LYS A 6 CG CD CE NZ
REMARK 470 ILE A 9 CG1 CG2 CD1
REMARK 470 GLN A 14 CD OE1 NE2
REMARK 470 LYS A 29 NZ
REMARK 470 LYS A 64 CE NZ
REMARK 470 LYS A 92 CG CD CE NZ
REMARK 470 LYS A 143 CD CE NZ
REMARK 470 ASN A 205 OD1 ND2
REMARK 470 LYS A 219 CE NZ
REMARK 470 LYS A 246 CD CE NZ
REMARK 470 GLU A 264 CG CD OE1 OE2
REMARK 470 LEU A 269 CG CD1 CD2
REMARK 470 LYS A 270 CG CD CE NZ
REMARK 470 LYS A 273 CG CD CE NZ
REMARK 470 GLU A 274 CG CD OE1 OE2
REMARK 470 ASP A 286 OD1 OD2
REMARK 470 ARG A 287 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 294 CG CD CE NZ
REMARK 470 LYS A 306 CG CD CE NZ
REMARK 470 LYS A 309 CG CD CE NZ
REMARK 470 LYS A 325 CG CD CE NZ
REMARK 470 ASP A 337 CG OD1 OD2
REMARK 470 LYS A 339 CG CD CE NZ
REMARK 470 GLU A 342 CG CD OE1 OE2
REMARK 470 GLN A 350 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 41 O HOH A 501 2.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 43 -152.38 52.00
REMARK 500 PHE A 90 63.02 61.52
REMARK 500 ILE A 212 -67.87 -125.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OK3 A 400
DBREF 5J8X A 1 363 UNP P0AEB2 DACA_ECOLI 30 392
SEQADV 5J8X MET A -22 UNP P0AEB2 INITIATING METHIONINE
SEQADV 5J8X GLY A -21 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X SER A -20 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X SER A -19 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -18 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -17 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -16 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -15 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -14 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -13 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X SER A -12 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X SER A -11 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X GLY A -10 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X LEU A -9 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X VAL A -8 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X PRO A -7 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X ARG A -6 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X GLY A -5 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X SER A -4 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X HIS A -3 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X MET A -2 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X ALA A -1 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X SER A 0 UNP P0AEB2 EXPRESSION TAG
SEQADV 5J8X CYS A 364 UNP P0AEB2 EXPRESSION TAG
SEQRES 1 A 387 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 387 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP ASP LEU
SEQRES 3 A 387 ASN ILE LYS THR MET ILE PRO GLY VAL PRO GLN ILE ASP
SEQRES 4 A 387 ALA GLU SER TYR ILE LEU ILE ASP TYR ASN SER GLY LYS
SEQRES 5 A 387 VAL LEU ALA GLU GLN ASN ALA ASP VAL ARG ARG ASP PRO
SEQRES 6 A 387 ALA SER LEU THR LYS MET MET THR SER TYR VAL ILE GLY
SEQRES 7 A 387 GLN ALA MET LYS ALA GLY LYS PHE LYS GLU THR ASP LEU
SEQRES 8 A 387 VAL THR ILE GLY ASN ASP ALA TRP ALA THR GLY ASN PRO
SEQRES 9 A 387 VAL PHE LYS GLY SER SER LEU MET PHE LEU LYS PRO GLY
SEQRES 10 A 387 MET GLN VAL PRO VAL SER GLN LEU ILE ARG GLY ILE ASN
SEQRES 11 A 387 LEU GLN SER GLY ASN ASP ALA CYS VAL ALA MET ALA ASP
SEQRES 12 A 387 PHE ALA ALA GLY SER GLN ASP ALA PHE VAL GLY LEU MET
SEQRES 13 A 387 ASN SER TYR VAL ASN ALA LEU GLY LEU LYS ASN THR HIS
SEQRES 14 A 387 PHE GLN THR VAL HIS GLY LEU ASP ALA ASP GLY GLN TYR
SEQRES 15 A 387 SER SER ALA ARG ASP MET ALA LEU ILE GLY GLN ALA LEU
SEQRES 16 A 387 ILE ARG ASP VAL PRO ASN GLU TYR SER ILE TYR LYS GLU
SEQRES 17 A 387 LYS GLU PHE THR PHE ASN GLY ILE ARG GLN LEU ASN ARG
SEQRES 18 A 387 ASN GLY LEU LEU TRP ASP ASN SER LEU ASN VAL ASP GLY
SEQRES 19 A 387 ILE LYS THR GLY HIS THR ASP LYS ALA GLY TYR ASN LEU
SEQRES 20 A 387 VAL ALA SER ALA THR GLU GLY GLN MET ARG LEU ILE SER
SEQRES 21 A 387 ALA VAL MET GLY GLY ARG THR PHE LYS GLY ARG GLU ALA
SEQRES 22 A 387 GLU SER LYS LYS LEU LEU THR TRP GLY PHE ARG PHE PHE
SEQRES 23 A 387 GLU THR VAL ASN PRO LEU LYS VAL GLY LYS GLU PHE ALA
SEQRES 24 A 387 SER GLU PRO VAL TRP PHE GLY ASP SER ASP ARG ALA SER
SEQRES 25 A 387 LEU GLY VAL ASP LYS ASP VAL TYR LEU THR ILE PRO ARG
SEQRES 26 A 387 GLY ARG MET LYS ASP LEU LYS ALA SER TYR VAL LEU ASN
SEQRES 27 A 387 SER SER GLU LEU HIS ALA PRO LEU GLN LYS ASN GLN VAL
SEQRES 28 A 387 VAL GLY THR ILE ASN PHE GLN LEU ASP GLY LYS THR ILE
SEQRES 29 A 387 GLU GLN ARG PRO LEU VAL VAL LEU GLN GLU ILE PRO GLU
SEQRES 30 A 387 GLY ASN PHE PHE GLY LYS ILE ILE ASP CYS
HET OK3 A 400 25
HETNAM OK3 (4~{R})-4-[[4-(AMINOMETHYL)PHENYL]CARBONYLAMINO]-3,3-
HETNAM 2 OK3 BIS(OXIDANYL)-2-OXA-3-BORANUIDABICYCLO[4.4.0]DECA-
HETNAM 3 OK3 1(10),6,8-TRIENE-10-CARBOXYLIC ACID
FORMUL 2 OK3 C17 H18 B N2 O6 1-
FORMUL 3 HOH *27(H2 O)
HELIX 1 AA1 PRO A 42 SER A 44 5 3
HELIX 2 AA2 LEU A 45 GLY A 61 1 17
HELIX 3 AA3 VAL A 99 LEU A 108 1 10
HELIX 4 AA4 GLY A 111 GLY A 124 1 14
HELIX 5 AA5 SER A 125 LEU A 140 1 16
HELIX 6 AA6 SER A 161 VAL A 176 1 16
HELIX 7 AA7 VAL A 176 SER A 181 1 6
HELIX 8 AA8 ILE A 182 GLU A 185 5 4
HELIX 9 AA9 ASN A 199 ASP A 204 5 6
HELIX 10 AB1 THR A 244 PHE A 262 1 19
SHEET 1 AA1 5 VAL A 30 GLN A 34 0
SHEET 2 AA1 5 ALA A 17 ASP A 24 -1 N LEU A 22 O LEU A 31
SHEET 3 AA1 5 MET A 233 GLY A 242 -1 O ILE A 236 N ILE A 23
SHEET 4 AA1 5 GLY A 221 GLU A 230 -1 N LEU A 224 O VAL A 239
SHEET 5 AA1 5 VAL A 209 THR A 217 -1 N GLY A 215 O ASN A 223
SHEET 1 AA2 2 LEU A 68 THR A 70 0
SHEET 2 AA2 2 GLN A 96 PRO A 98 -1 O VAL A 97 N VAL A 69
SHEET 1 AA3 2 GLU A 187 PHE A 190 0
SHEET 2 AA3 2 ILE A 193 LEU A 196 -1 O GLN A 195 N PHE A 188
SHEET 1 AA4 2 PHE A 263 VAL A 266 0
SHEET 2 AA4 2 LEU A 298 PRO A 301 -1 O LEU A 298 N VAL A 266
SHEET 1 AA5 6 LYS A 309 LEU A 314 0
SHEET 2 AA5 6 VAL A 328 LEU A 336 -1 O GLN A 335 N LYS A 309
SHEET 3 AA5 6 LYS A 339 VAL A 348 -1 O ARG A 344 N ILE A 332
SHEET 4 AA5 6 ARG A 287 GLY A 291 -1 N GLY A 291 O VAL A 347
SHEET 5 AA5 6 ALA A 276 TRP A 281 -1 N ALA A 276 O LEU A 290
SHEET 6 AA5 6 LEU A 319 HIS A 320 1 O LEU A 319 N TRP A 281
LINK OG SER A 44 B17 OK3 A 400 1555 1555 1.39
CISPEP 1 GLY A 72 ASN A 73 0 1.81
CISPEP 2 GLY A 211 ILE A 212 0 -0.55
CISPEP 3 ALA A 321 PRO A 322 0 0.13
SITE 1 AC1 11 SER A 44 SER A 110 ASN A 112 LEU A 153
SITE 2 AC1 11 ARG A 198 THR A 214 GLY A 215 HIS A 216
SITE 3 AC1 11 ASP A 218 ARG A 248 TRP A 281
CRYST1 50.223 61.606 138.430 90.00 90.00 90.00 P 2 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019911 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016232 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007224 0.00000