data_5J97 # _entry.id 5J97 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5J97 pdb_00005j97 10.2210/pdb5j97/pdb WWPDB D_1000220138 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5J97 _pdbx_database_status.recvd_initial_deposition_date 2016-04-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wu, Y.' 1 ? 'Zhu, J.' 2 ? 'Huang, X.' 3 ? 'Du, Z.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Du, Z.' 1 ? primary 'Wu, Y.' 2 ? primary 'Zhu, J.' 3 ? primary 'Huang, X.' 4 ? # _cell.entry_id 5J97 _cell.length_a 71.020 _cell.length_b 71.020 _cell.length_c 133.760 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J97 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Caprin-2 15815.776 2 ? ? 'UNP residues 199-329' ? 2 water nat water 18.015 77 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;C1q domain-containing protein 1,Cytoplasmic activation/proliferation-associated protein 2,Gastric cancer multidrug resistance-associated protein,Protein EEG-1,RNA granule protein 140 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPSSPSQRREH(MSE)LKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNES LSVEDQ(MSE)EQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVP ; _entity_poly.pdbx_seq_one_letter_code_can ;GPSSPSQRREHMLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVE DQMEQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 SER n 1 4 SER n 1 5 PRO n 1 6 SER n 1 7 GLN n 1 8 ARG n 1 9 ARG n 1 10 GLU n 1 11 HIS n 1 12 MSE n 1 13 LEU n 1 14 LYS n 1 15 LEU n 1 16 GLU n 1 17 ALA n 1 18 GLU n 1 19 LYS n 1 20 LYS n 1 21 LYS n 1 22 LEU n 1 23 ARG n 1 24 THR n 1 25 ILE n 1 26 LEU n 1 27 GLN n 1 28 VAL n 1 29 GLN n 1 30 TYR n 1 31 VAL n 1 32 LEU n 1 33 GLN n 1 34 ASN n 1 35 LEU n 1 36 THR n 1 37 GLN n 1 38 GLU n 1 39 HIS n 1 40 VAL n 1 41 GLN n 1 42 LYS n 1 43 ASP n 1 44 PHE n 1 45 LYS n 1 46 GLY n 1 47 GLY n 1 48 LEU n 1 49 ASN n 1 50 GLY n 1 51 ALA n 1 52 VAL n 1 53 TYR n 1 54 LEU n 1 55 PRO n 1 56 SER n 1 57 LYS n 1 58 GLU n 1 59 LEU n 1 60 ASP n 1 61 TYR n 1 62 LEU n 1 63 ILE n 1 64 LYS n 1 65 PHE n 1 66 SER n 1 67 LYS n 1 68 LEU n 1 69 THR n 1 70 CYS n 1 71 PRO n 1 72 GLU n 1 73 ARG n 1 74 ASN n 1 75 GLU n 1 76 SER n 1 77 LEU n 1 78 SER n 1 79 VAL n 1 80 GLU n 1 81 ASP n 1 82 GLN n 1 83 MSE n 1 84 GLU n 1 85 GLN n 1 86 SER n 1 87 SER n 1 88 LEU n 1 89 TYR n 1 90 PHE n 1 91 TRP n 1 92 ASP n 1 93 LEU n 1 94 LEU n 1 95 GLU n 1 96 GLY n 1 97 SER n 1 98 GLU n 1 99 LYS n 1 100 ALA n 1 101 VAL n 1 102 VAL n 1 103 GLY n 1 104 THR n 1 105 THR n 1 106 TYR n 1 107 LYS n 1 108 HIS n 1 109 LEU n 1 110 LYS n 1 111 ASP n 1 112 LEU n 1 113 LEU n 1 114 SER n 1 115 LYS n 1 116 LEU n 1 117 LEU n 1 118 ASN n 1 119 SER n 1 120 GLY n 1 121 TYR n 1 122 PHE n 1 123 GLU n 1 124 SER n 1 125 ILE n 1 126 PRO n 1 127 VAL n 1 128 PRO n 1 129 LYS n 1 130 ASN n 1 131 ALA n 1 132 LYS n 1 133 GLU n 1 134 LYS n 1 135 GLU n 1 136 VAL n 1 137 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 137 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CAPRIN2, C1QDC1, EEG1, KIAA1873, RNG140' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CAPR2_HUMAN _struct_ref.pdbx_db_accession Q6IMN6 _struct_ref.pdbx_db_isoform Q6IMN6-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QRREHMLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQS SLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVP ; _struct_ref.pdbx_align_begin 199 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5J97 A 7 ? 137 ? Q6IMN6 199 ? 329 ? 199 329 2 1 5J97 B 7 ? 137 ? Q6IMN6 199 ? 329 ? 199 329 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5J97 GLY A 1 ? UNP Q6IMN6 ? ? 'expression tag' 193 1 1 5J97 PRO A 2 ? UNP Q6IMN6 ? ? 'expression tag' 194 2 1 5J97 SER A 3 ? UNP Q6IMN6 ? ? 'expression tag' 195 3 1 5J97 SER A 4 ? UNP Q6IMN6 ? ? 'expression tag' 196 4 1 5J97 PRO A 5 ? UNP Q6IMN6 ? ? 'expression tag' 197 5 1 5J97 SER A 6 ? UNP Q6IMN6 ? ? 'expression tag' 198 6 2 5J97 GLY B 1 ? UNP Q6IMN6 ? ? 'expression tag' 193 7 2 5J97 PRO B 2 ? UNP Q6IMN6 ? ? 'expression tag' 194 8 2 5J97 SER B 3 ? UNP Q6IMN6 ? ? 'expression tag' 195 9 2 5J97 SER B 4 ? UNP Q6IMN6 ? ? 'expression tag' 196 10 2 5J97 PRO B 5 ? UNP Q6IMN6 ? ? 'expression tag' 197 11 2 5J97 SER B 6 ? UNP Q6IMN6 ? ? 'expression tag' 198 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5J97 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG8000, 0.1 M Tris (pH8.0), 10% glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5J97 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.158 _reflns.d_resolution_high 2.550 _reflns.number_obs 11231 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.40 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5J97 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10974 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.16 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 93.3 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.244 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.970 _refine.ls_number_reflns_R_free 1094 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.81 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.280 _refine.pdbx_overall_phase_error 25.760 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2013 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 2090 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 40.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 2050 'X-RAY DIFFRACTION' ? f_angle_d 0.990 ? ? 2758 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.787 ? ? 794 'X-RAY DIFFRACTION' ? f_chiral_restr 0.077 ? ? 307 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 348 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_type 'X-RAY DIFFRACTION' 1 1 1 ? ? ? ? ? A 1129 POSITIONAL 'X-RAY DIFFRACTION' 2 1 2 ? ? ? ? ? B 1129 POSITIONAL # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.5502 2.6662 1137 0.2783 88.00 0.3282 . . 127 . . 'X-RAY DIFFRACTION' . 2.6662 2.8067 1166 0.2666 90.00 0.3507 . . 126 . . 'X-RAY DIFFRACTION' . 2.8067 2.9825 1192 0.2513 92.00 0.2915 . . 130 . . 'X-RAY DIFFRACTION' . 2.9825 3.2127 1216 0.2515 94.00 0.3261 . . 137 . . 'X-RAY DIFFRACTION' . 3.2127 3.5359 1247 0.2222 95.00 0.2987 . . 137 . . 'X-RAY DIFFRACTION' . 3.5359 4.0471 1252 0.1903 96.00 0.2376 . . 138 . . 'X-RAY DIFFRACTION' . 4.0471 5.0973 1300 0.1759 96.00 0.1957 . . 146 . . 'X-RAY DIFFRACTION' . 5.0973 40.1630 1370 0.2015 95.00 0.1953 . . 153 . . # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 ? 1 2 ? 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 'CHAIN A' 2 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 'CHAIN B' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 5J97 _struct.title 'Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5J97 _struct_keywords.text 'all alpha helical, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 4 ? THR A 36 ? SER A 196 THR A 228 1 ? 33 HELX_P HELX_P2 AA2 GLN A 37 ? GLY A 46 ? GLN A 229 GLY A 238 1 ? 10 HELX_P HELX_P3 AA3 PRO A 55 ? CYS A 70 ? PRO A 247 CYS A 262 1 ? 16 HELX_P HELX_P4 AA4 SER A 78 ? GLY A 96 ? SER A 270 GLY A 288 1 ? 19 HELX_P HELX_P5 AA5 TYR A 106 ? GLY A 120 ? TYR A 298 GLY A 312 1 ? 15 HELX_P HELX_P6 AA6 ARG B 9 ? THR B 36 ? ARG B 201 THR B 228 1 ? 28 HELX_P HELX_P7 AA7 GLN B 37 ? GLY B 47 ? GLN B 229 GLY B 239 1 ? 11 HELX_P HELX_P8 AA8 PRO B 55 ? CYS B 70 ? PRO B 247 CYS B 262 1 ? 16 HELX_P HELX_P9 AA9 SER B 78 ? GLY B 96 ? SER B 270 GLY B 288 1 ? 19 HELX_P HELX_P10 AB1 TYR B 106 ? ASN B 118 ? TYR B 298 ASN B 310 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 11 C ? ? ? 1_555 A MSE 12 N ? ? A HIS 203 A MSE 204 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 12 C ? ? ? 1_555 A LEU 13 N ? ? A MSE 204 A LEU 205 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A GLN 82 C ? ? ? 1_555 A MSE 83 N ? ? A GLN 274 A MSE 275 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 83 C ? ? ? 1_555 A GLU 84 N ? ? A MSE 275 A GLU 276 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? B HIS 11 C ? ? ? 1_555 B MSE 12 N ? ? B HIS 203 B MSE 204 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? B MSE 12 C ? ? ? 1_555 B LEU 13 N ? ? B MSE 204 B LEU 205 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? B GLN 82 C ? ? ? 1_555 B MSE 83 N ? ? B GLN 274 B MSE 275 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? B MSE 83 C ? ? ? 1_555 B GLU 84 N ? ? B MSE 275 B GLU 276 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 100 ? VAL A 101 ? ALA A 292 VAL A 293 AA1 2 THR A 104 ? THR A 105 ? THR A 296 THR A 297 AA2 1 ALA B 100 ? VAL B 101 ? ALA B 292 VAL B 293 AA2 2 THR B 104 ? THR B 105 ? THR B 296 THR B 297 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 101 ? N VAL A 293 O THR A 104 ? O THR A 296 AA2 1 2 N VAL B 101 ? N VAL B 293 O THR B 104 ? O THR B 296 # _atom_sites.entry_id 5J97 _atom_sites.fract_transf_matrix[1][1] 0.014081 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014081 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007476 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 193 ? ? ? A . n A 1 2 PRO 2 194 ? ? ? A . n A 1 3 SER 3 195 ? ? ? A . n A 1 4 SER 4 196 196 SER SER A . n A 1 5 PRO 5 197 197 PRO PRO A . n A 1 6 SER 6 198 198 SER SER A . n A 1 7 GLN 7 199 199 GLN GLN A . n A 1 8 ARG 8 200 200 ARG ARG A . n A 1 9 ARG 9 201 201 ARG ARG A . n A 1 10 GLU 10 202 202 GLU GLU A . n A 1 11 HIS 11 203 203 HIS HIS A . n A 1 12 MSE 12 204 204 MSE MSE A . n A 1 13 LEU 13 205 205 LEU LEU A . n A 1 14 LYS 14 206 206 LYS LYS A . n A 1 15 LEU 15 207 207 LEU LEU A . n A 1 16 GLU 16 208 208 GLU GLU A . n A 1 17 ALA 17 209 209 ALA ALA A . n A 1 18 GLU 18 210 210 GLU GLU A . n A 1 19 LYS 19 211 211 LYS LYS A . n A 1 20 LYS 20 212 212 LYS LYS A . n A 1 21 LYS 21 213 213 LYS LYS A . n A 1 22 LEU 22 214 214 LEU LEU A . n A 1 23 ARG 23 215 215 ARG ARG A . n A 1 24 THR 24 216 216 THR THR A . n A 1 25 ILE 25 217 217 ILE ILE A . n A 1 26 LEU 26 218 218 LEU LEU A . n A 1 27 GLN 27 219 219 GLN GLN A . n A 1 28 VAL 28 220 220 VAL VAL A . n A 1 29 GLN 29 221 221 GLN GLN A . n A 1 30 TYR 30 222 222 TYR TYR A . n A 1 31 VAL 31 223 223 VAL VAL A . n A 1 32 LEU 32 224 224 LEU LEU A . n A 1 33 GLN 33 225 225 GLN GLN A . n A 1 34 ASN 34 226 226 ASN ASN A . n A 1 35 LEU 35 227 227 LEU LEU A . n A 1 36 THR 36 228 228 THR THR A . n A 1 37 GLN 37 229 229 GLN GLN A . n A 1 38 GLU 38 230 230 GLU GLU A . n A 1 39 HIS 39 231 231 HIS HIS A . n A 1 40 VAL 40 232 232 VAL VAL A . n A 1 41 GLN 41 233 233 GLN GLN A . n A 1 42 LYS 42 234 234 LYS LYS A . n A 1 43 ASP 43 235 235 ASP ASP A . n A 1 44 PHE 44 236 236 PHE PHE A . n A 1 45 LYS 45 237 237 LYS LYS A . n A 1 46 GLY 46 238 238 GLY GLY A . n A 1 47 GLY 47 239 239 GLY GLY A . n A 1 48 LEU 48 240 240 LEU LEU A . n A 1 49 ASN 49 241 241 ASN ASN A . n A 1 50 GLY 50 242 242 GLY GLY A . n A 1 51 ALA 51 243 243 ALA ALA A . n A 1 52 VAL 52 244 244 VAL VAL A . n A 1 53 TYR 53 245 245 TYR TYR A . n A 1 54 LEU 54 246 246 LEU LEU A . n A 1 55 PRO 55 247 247 PRO PRO A . n A 1 56 SER 56 248 248 SER SER A . n A 1 57 LYS 57 249 249 LYS LYS A . n A 1 58 GLU 58 250 250 GLU GLU A . n A 1 59 LEU 59 251 251 LEU LEU A . n A 1 60 ASP 60 252 252 ASP ASP A . n A 1 61 TYR 61 253 253 TYR TYR A . n A 1 62 LEU 62 254 254 LEU LEU A . n A 1 63 ILE 63 255 255 ILE ILE A . n A 1 64 LYS 64 256 256 LYS LYS A . n A 1 65 PHE 65 257 257 PHE PHE A . n A 1 66 SER 66 258 258 SER SER A . n A 1 67 LYS 67 259 259 LYS LYS A . n A 1 68 LEU 68 260 260 LEU LEU A . n A 1 69 THR 69 261 261 THR THR A . n A 1 70 CYS 70 262 262 CYS CYS A . n A 1 71 PRO 71 263 263 PRO PRO A . n A 1 72 GLU 72 264 264 GLU GLU A . n A 1 73 ARG 73 265 265 ARG ARG A . n A 1 74 ASN 74 266 266 ASN ASN A . n A 1 75 GLU 75 267 267 GLU GLU A . n A 1 76 SER 76 268 268 SER SER A . n A 1 77 LEU 77 269 269 LEU LEU A . n A 1 78 SER 78 270 270 SER SER A . n A 1 79 VAL 79 271 271 VAL VAL A . n A 1 80 GLU 80 272 272 GLU GLU A . n A 1 81 ASP 81 273 273 ASP ASP A . n A 1 82 GLN 82 274 274 GLN GLN A . n A 1 83 MSE 83 275 275 MSE MSE A . n A 1 84 GLU 84 276 276 GLU GLU A . n A 1 85 GLN 85 277 277 GLN GLN A . n A 1 86 SER 86 278 278 SER SER A . n A 1 87 SER 87 279 279 SER SER A . n A 1 88 LEU 88 280 280 LEU LEU A . n A 1 89 TYR 89 281 281 TYR TYR A . n A 1 90 PHE 90 282 282 PHE PHE A . n A 1 91 TRP 91 283 283 TRP TRP A . n A 1 92 ASP 92 284 284 ASP ASP A . n A 1 93 LEU 93 285 285 LEU LEU A . n A 1 94 LEU 94 286 286 LEU LEU A . n A 1 95 GLU 95 287 287 GLU GLU A . n A 1 96 GLY 96 288 288 GLY GLY A . n A 1 97 SER 97 289 289 SER SER A . n A 1 98 GLU 98 290 290 GLU GLU A . n A 1 99 LYS 99 291 291 LYS LYS A . n A 1 100 ALA 100 292 292 ALA ALA A . n A 1 101 VAL 101 293 293 VAL VAL A . n A 1 102 VAL 102 294 294 VAL VAL A . n A 1 103 GLY 103 295 295 GLY GLY A . n A 1 104 THR 104 296 296 THR THR A . n A 1 105 THR 105 297 297 THR THR A . n A 1 106 TYR 106 298 298 TYR TYR A . n A 1 107 LYS 107 299 299 LYS LYS A . n A 1 108 HIS 108 300 300 HIS HIS A . n A 1 109 LEU 109 301 301 LEU LEU A . n A 1 110 LYS 110 302 302 LYS LYS A . n A 1 111 ASP 111 303 303 ASP ASP A . n A 1 112 LEU 112 304 304 LEU LEU A . n A 1 113 LEU 113 305 305 LEU LEU A . n A 1 114 SER 114 306 306 SER SER A . n A 1 115 LYS 115 307 307 LYS LYS A . n A 1 116 LEU 116 308 308 LEU LEU A . n A 1 117 LEU 117 309 309 LEU LEU A . n A 1 118 ASN 118 310 310 ASN ASN A . n A 1 119 SER 119 311 311 SER SER A . n A 1 120 GLY 120 312 312 GLY GLY A . n A 1 121 TYR 121 313 313 TYR TYR A . n A 1 122 PHE 122 314 314 PHE PHE A . n A 1 123 GLU 123 315 315 GLU GLU A . n A 1 124 SER 124 316 316 SER SER A . n A 1 125 ILE 125 317 317 ILE ILE A . n A 1 126 PRO 126 318 318 PRO PRO A . n A 1 127 VAL 127 319 319 VAL VAL A . n A 1 128 PRO 128 320 320 PRO PRO A . n A 1 129 LYS 129 321 ? ? ? A . n A 1 130 ASN 130 322 ? ? ? A . n A 1 131 ALA 131 323 ? ? ? A . n A 1 132 LYS 132 324 ? ? ? A . n A 1 133 GLU 133 325 ? ? ? A . n A 1 134 LYS 134 326 ? ? ? A . n A 1 135 GLU 135 327 ? ? ? A . n A 1 136 VAL 136 328 ? ? ? A . n A 1 137 PRO 137 329 ? ? ? A . n B 1 1 GLY 1 193 ? ? ? B . n B 1 2 PRO 2 194 ? ? ? B . n B 1 3 SER 3 195 ? ? ? B . n B 1 4 SER 4 196 ? ? ? B . n B 1 5 PRO 5 197 ? ? ? B . n B 1 6 SER 6 198 ? ? ? B . n B 1 7 GLN 7 199 199 GLN GLN B . n B 1 8 ARG 8 200 200 ARG ARG B . n B 1 9 ARG 9 201 201 ARG ARG B . n B 1 10 GLU 10 202 202 GLU GLU B . n B 1 11 HIS 11 203 203 HIS HIS B . n B 1 12 MSE 12 204 204 MSE MSE B . n B 1 13 LEU 13 205 205 LEU LEU B . n B 1 14 LYS 14 206 206 LYS LYS B . n B 1 15 LEU 15 207 207 LEU LEU B . n B 1 16 GLU 16 208 208 GLU GLU B . n B 1 17 ALA 17 209 209 ALA ALA B . n B 1 18 GLU 18 210 210 GLU GLU B . n B 1 19 LYS 19 211 211 LYS LYS B . n B 1 20 LYS 20 212 212 LYS LYS B . n B 1 21 LYS 21 213 213 LYS LYS B . n B 1 22 LEU 22 214 214 LEU LEU B . n B 1 23 ARG 23 215 215 ARG ARG B . n B 1 24 THR 24 216 216 THR THR B . n B 1 25 ILE 25 217 217 ILE ILE B . n B 1 26 LEU 26 218 218 LEU LEU B . n B 1 27 GLN 27 219 219 GLN GLN B . n B 1 28 VAL 28 220 220 VAL VAL B . n B 1 29 GLN 29 221 221 GLN GLN B . n B 1 30 TYR 30 222 222 TYR TYR B . n B 1 31 VAL 31 223 223 VAL VAL B . n B 1 32 LEU 32 224 224 LEU LEU B . n B 1 33 GLN 33 225 225 GLN GLN B . n B 1 34 ASN 34 226 226 ASN ASN B . n B 1 35 LEU 35 227 227 LEU LEU B . n B 1 36 THR 36 228 228 THR THR B . n B 1 37 GLN 37 229 229 GLN GLN B . n B 1 38 GLU 38 230 230 GLU GLU B . n B 1 39 HIS 39 231 231 HIS HIS B . n B 1 40 VAL 40 232 232 VAL VAL B . n B 1 41 GLN 41 233 233 GLN GLN B . n B 1 42 LYS 42 234 234 LYS LYS B . n B 1 43 ASP 43 235 235 ASP ASP B . n B 1 44 PHE 44 236 236 PHE PHE B . n B 1 45 LYS 45 237 237 LYS LYS B . n B 1 46 GLY 46 238 238 GLY GLY B . n B 1 47 GLY 47 239 239 GLY GLY B . n B 1 48 LEU 48 240 240 LEU LEU B . n B 1 49 ASN 49 241 241 ASN ASN B . n B 1 50 GLY 50 242 242 GLY GLY B . n B 1 51 ALA 51 243 243 ALA ALA B . n B 1 52 VAL 52 244 244 VAL VAL B . n B 1 53 TYR 53 245 245 TYR TYR B . n B 1 54 LEU 54 246 246 LEU LEU B . n B 1 55 PRO 55 247 247 PRO PRO B . n B 1 56 SER 56 248 248 SER SER B . n B 1 57 LYS 57 249 249 LYS LYS B . n B 1 58 GLU 58 250 250 GLU GLU B . n B 1 59 LEU 59 251 251 LEU LEU B . n B 1 60 ASP 60 252 252 ASP ASP B . n B 1 61 TYR 61 253 253 TYR TYR B . n B 1 62 LEU 62 254 254 LEU LEU B . n B 1 63 ILE 63 255 255 ILE ILE B . n B 1 64 LYS 64 256 256 LYS LYS B . n B 1 65 PHE 65 257 257 PHE PHE B . n B 1 66 SER 66 258 258 SER SER B . n B 1 67 LYS 67 259 259 LYS LYS B . n B 1 68 LEU 68 260 260 LEU LEU B . n B 1 69 THR 69 261 261 THR THR B . n B 1 70 CYS 70 262 262 CYS CYS B . n B 1 71 PRO 71 263 263 PRO PRO B . n B 1 72 GLU 72 264 264 GLU GLU B . n B 1 73 ARG 73 265 265 ARG ARG B . n B 1 74 ASN 74 266 266 ASN ASN B . n B 1 75 GLU 75 267 267 GLU GLU B . n B 1 76 SER 76 268 268 SER SER B . n B 1 77 LEU 77 269 269 LEU LEU B . n B 1 78 SER 78 270 270 SER SER B . n B 1 79 VAL 79 271 271 VAL VAL B . n B 1 80 GLU 80 272 272 GLU GLU B . n B 1 81 ASP 81 273 273 ASP ASP B . n B 1 82 GLN 82 274 274 GLN GLN B . n B 1 83 MSE 83 275 275 MSE MSE B . n B 1 84 GLU 84 276 276 GLU GLU B . n B 1 85 GLN 85 277 277 GLN GLN B . n B 1 86 SER 86 278 278 SER SER B . n B 1 87 SER 87 279 279 SER SER B . n B 1 88 LEU 88 280 280 LEU LEU B . n B 1 89 TYR 89 281 281 TYR TYR B . n B 1 90 PHE 90 282 282 PHE PHE B . n B 1 91 TRP 91 283 283 TRP TRP B . n B 1 92 ASP 92 284 284 ASP ASP B . n B 1 93 LEU 93 285 285 LEU LEU B . n B 1 94 LEU 94 286 286 LEU LEU B . n B 1 95 GLU 95 287 287 GLU GLU B . n B 1 96 GLY 96 288 288 GLY GLY B . n B 1 97 SER 97 289 289 SER SER B . n B 1 98 GLU 98 290 290 GLU GLU B . n B 1 99 LYS 99 291 291 LYS LYS B . n B 1 100 ALA 100 292 292 ALA ALA B . n B 1 101 VAL 101 293 293 VAL VAL B . n B 1 102 VAL 102 294 294 VAL VAL B . n B 1 103 GLY 103 295 295 GLY GLY B . n B 1 104 THR 104 296 296 THR THR B . n B 1 105 THR 105 297 297 THR THR B . n B 1 106 TYR 106 298 298 TYR TYR B . n B 1 107 LYS 107 299 299 LYS LYS B . n B 1 108 HIS 108 300 300 HIS HIS B . n B 1 109 LEU 109 301 301 LEU LEU B . n B 1 110 LYS 110 302 302 LYS LYS B . n B 1 111 ASP 111 303 303 ASP ASP B . n B 1 112 LEU 112 304 304 LEU LEU B . n B 1 113 LEU 113 305 305 LEU LEU B . n B 1 114 SER 114 306 306 SER SER B . n B 1 115 LYS 115 307 307 LYS LYS B . n B 1 116 LEU 116 308 308 LEU LEU B . n B 1 117 LEU 117 309 309 LEU LEU B . n B 1 118 ASN 118 310 310 ASN ASN B . n B 1 119 SER 119 311 311 SER SER B . n B 1 120 GLY 120 312 312 GLY GLY B . n B 1 121 TYR 121 313 313 TYR TYR B . n B 1 122 PHE 122 314 314 PHE PHE B . n B 1 123 GLU 123 315 315 GLU GLU B . n B 1 124 SER 124 316 316 SER SER B . n B 1 125 ILE 125 317 317 ILE ILE B . n B 1 126 PRO 126 318 318 PRO PRO B . n B 1 127 VAL 127 319 319 VAL VAL B . n B 1 128 PRO 128 320 320 PRO PRO B . n B 1 129 LYS 129 321 ? ? ? B . n B 1 130 ASN 130 322 ? ? ? B . n B 1 131 ALA 131 323 ? ? ? B . n B 1 132 LYS 132 324 ? ? ? B . n B 1 133 GLU 133 325 ? ? ? B . n B 1 134 LYS 134 326 ? ? ? B . n B 1 135 GLU 135 327 ? ? ? B . n B 1 136 VAL 136 328 ? ? ? B . n B 1 137 PRO 137 329 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 401 401 HOH HOH A . C 2 HOH 2 402 402 HOH HOH A . C 2 HOH 3 403 403 HOH HOH A . C 2 HOH 4 404 404 HOH HOH A . C 2 HOH 5 405 405 HOH HOH A . C 2 HOH 6 406 406 HOH HOH A . C 2 HOH 7 407 407 HOH HOH A . C 2 HOH 8 408 408 HOH HOH A . C 2 HOH 9 409 409 HOH HOH A . C 2 HOH 10 410 410 HOH HOH A . C 2 HOH 11 411 411 HOH HOH A . C 2 HOH 12 412 412 HOH HOH A . C 2 HOH 13 413 413 HOH HOH A . C 2 HOH 14 414 414 HOH HOH A . C 2 HOH 15 415 415 HOH HOH A . C 2 HOH 16 416 416 HOH HOH A . C 2 HOH 17 417 417 HOH HOH A . C 2 HOH 18 418 418 HOH HOH A . C 2 HOH 19 419 419 HOH HOH A . C 2 HOH 20 420 420 HOH HOH A . C 2 HOH 21 421 421 HOH HOH A . C 2 HOH 22 422 422 HOH HOH A . C 2 HOH 23 423 423 HOH HOH A . C 2 HOH 24 424 424 HOH HOH A . C 2 HOH 25 425 425 HOH HOH A . C 2 HOH 26 426 426 HOH HOH A . C 2 HOH 27 427 427 HOH HOH A . C 2 HOH 28 428 428 HOH HOH A . C 2 HOH 29 429 429 HOH HOH A . C 2 HOH 30 430 430 HOH HOH A . C 2 HOH 31 431 431 HOH HOH A . C 2 HOH 32 432 432 HOH HOH A . C 2 HOH 33 433 433 HOH HOH A . C 2 HOH 34 434 434 HOH HOH A . C 2 HOH 35 435 435 HOH HOH A . C 2 HOH 36 436 436 HOH HOH A . C 2 HOH 37 437 437 HOH HOH A . D 2 HOH 1 401 401 HOH HOH B . D 2 HOH 2 402 402 HOH HOH B . D 2 HOH 3 403 403 HOH HOH B . D 2 HOH 4 404 404 HOH HOH B . D 2 HOH 5 405 405 HOH HOH B . D 2 HOH 6 406 406 HOH HOH B . D 2 HOH 7 407 407 HOH HOH B . D 2 HOH 8 408 408 HOH HOH B . D 2 HOH 9 409 409 HOH HOH B . D 2 HOH 10 410 410 HOH HOH B . D 2 HOH 11 411 411 HOH HOH B . D 2 HOH 12 412 412 HOH HOH B . D 2 HOH 13 413 413 HOH HOH B . D 2 HOH 14 414 414 HOH HOH B . D 2 HOH 15 415 415 HOH HOH B . D 2 HOH 16 416 416 HOH HOH B . D 2 HOH 17 417 417 HOH HOH B . D 2 HOH 18 418 418 HOH HOH B . D 2 HOH 19 419 419 HOH HOH B . D 2 HOH 20 420 420 HOH HOH B . D 2 HOH 21 421 421 HOH HOH B . D 2 HOH 22 422 422 HOH HOH B . D 2 HOH 23 423 423 HOH HOH B . D 2 HOH 24 424 424 HOH HOH B . D 2 HOH 25 425 425 HOH HOH B . D 2 HOH 26 426 426 HOH HOH B . D 2 HOH 27 427 427 HOH HOH B . D 2 HOH 28 428 428 HOH HOH B . D 2 HOH 29 429 429 HOH HOH B . D 2 HOH 30 430 430 HOH HOH B . D 2 HOH 31 431 431 HOH HOH B . D 2 HOH 32 432 432 HOH HOH B . D 2 HOH 33 433 433 HOH HOH B . D 2 HOH 34 434 434 HOH HOH B . D 2 HOH 35 435 435 HOH HOH B . D 2 HOH 36 436 436 HOH HOH B . D 2 HOH 37 437 437 HOH HOH B . D 2 HOH 38 438 438 HOH HOH B . D 2 HOH 39 439 439 HOH HOH B . D 2 HOH 40 440 440 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 83 A MSE 275 ? MET 'modified residue' 2 B MSE 83 B MSE 275 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2690 ? 1 MORE -20 ? 1 'SSA (A^2)' 13710 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-09 2 'Structure model' 1 1 2017-09-13 3 'Structure model' 1 2 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.2_1309 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.2_1309 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 424 ? ? O B HOH 431 ? ? 1.84 2 1 O B HOH 427 ? ? O B HOH 435 ? ? 1.94 3 1 NZ B LYS 213 ? ? O B HOH 401 ? ? 1.97 4 1 O B HOH 420 ? ? O B HOH 437 ? ? 2.09 5 1 O B PHE 236 ? ? O B HOH 402 ? ? 2.11 6 1 O A GLN 225 ? ? OG1 A THR 228 ? ? 2.15 7 1 O B LEU 309 ? ? O B HOH 403 ? ? 2.16 8 1 OE1 B GLU 202 ? ? O B HOH 404 ? ? 2.17 9 1 O A HOH 413 ? ? O A HOH 430 ? ? 2.18 10 1 O B LEU 246 ? ? O B HOH 405 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 296 ? ? -152.02 -153.96 2 1 ARG B 200 ? ? -99.00 35.96 3 1 THR B 296 ? ? -152.62 -152.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 193 ? A GLY 1 2 1 Y 1 A PRO 194 ? A PRO 2 3 1 Y 1 A SER 195 ? A SER 3 4 1 Y 1 A LYS 321 ? A LYS 129 5 1 Y 1 A ASN 322 ? A ASN 130 6 1 Y 1 A ALA 323 ? A ALA 131 7 1 Y 1 A LYS 324 ? A LYS 132 8 1 Y 1 A GLU 325 ? A GLU 133 9 1 Y 1 A LYS 326 ? A LYS 134 10 1 Y 1 A GLU 327 ? A GLU 135 11 1 Y 1 A VAL 328 ? A VAL 136 12 1 Y 1 A PRO 329 ? A PRO 137 13 1 Y 1 B GLY 193 ? B GLY 1 14 1 Y 1 B PRO 194 ? B PRO 2 15 1 Y 1 B SER 195 ? B SER 3 16 1 Y 1 B SER 196 ? B SER 4 17 1 Y 1 B PRO 197 ? B PRO 5 18 1 Y 1 B SER 198 ? B SER 6 19 1 Y 1 B LYS 321 ? B LYS 129 20 1 Y 1 B ASN 322 ? B ASN 130 21 1 Y 1 B ALA 323 ? B ALA 131 22 1 Y 1 B LYS 324 ? B LYS 132 23 1 Y 1 B GLU 325 ? B GLU 133 24 1 Y 1 B LYS 326 ? B LYS 134 25 1 Y 1 B GLU 327 ? B GLU 135 26 1 Y 1 B VAL 328 ? B VAL 136 27 1 Y 1 B PRO 329 ? B PRO 137 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #