HEADER TRANSFERASE 08-APR-16 5J9A TITLE AMBIENT TEMPERATURE TRANSITION STATE STRUCTURE OF ARGININE KINASE - TITLE 2 CRYSTAL 11/FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK; COMPND 5 EC: 2.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMULUS POLYPHEMUS; SOURCE 3 ORGANISM_COMMON: ATLANTIC HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARGININE KINASE AMBIENT TEMPERATURE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GODSEY,O.DAVULCU,J.NIX,J.J.SKALICKY,R.BRUSCHWEILER,M.S.CHAPMAN REVDAT 6 27-SEP-23 5J9A 1 LINK REVDAT 5 25-DEC-19 5J9A 1 REMARK REVDAT 4 13-SEP-17 5J9A 1 JRNL REMARK REVDAT 3 19-OCT-16 5J9A 1 JRNL REVDAT 2 21-SEP-16 5J9A 1 JRNL REVDAT 1 17-AUG-16 5J9A 0 JRNL AUTH M.H.GODSEY,O.DAVULCU,J.C.NIX,J.J.SKALICKY,R.P.BRUSCHWEILER, JRNL AUTH 2 M.S.CHAPMAN JRNL TITL THE SAMPLING OF CONFORMATIONAL DYNAMICS IN JRNL TITL 2 AMBIENT-TEMPERATURE CRYSTAL STRUCTURES OF ARGININE KINASE. JRNL REF STRUCTURE V. 24 1658 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27594681 JRNL DOI 10.1016/J.STR.2016.07.013 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 26097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0293 - 4.8103 0.95 1785 148 0.1323 0.1760 REMARK 3 2 4.8103 - 3.8194 0.99 1791 152 0.1016 0.1324 REMARK 3 3 3.8194 - 3.3370 1.00 1764 144 0.1239 0.1635 REMARK 3 4 3.3370 - 3.0321 1.00 1770 146 0.1422 0.1989 REMARK 3 5 3.0321 - 2.8149 1.00 1753 136 0.1540 0.2182 REMARK 3 6 2.8149 - 2.6489 1.00 1721 161 0.1461 0.1820 REMARK 3 7 2.6489 - 2.5163 1.00 1751 136 0.1413 0.1918 REMARK 3 8 2.5163 - 2.4068 1.00 1733 141 0.1407 0.1791 REMARK 3 9 2.4068 - 2.3142 0.99 1721 155 0.1427 0.2011 REMARK 3 10 2.3142 - 2.2343 1.00 1735 127 0.1466 0.2021 REMARK 3 11 2.2343 - 2.1645 0.99 1707 145 0.1518 0.1883 REMARK 3 12 2.1645 - 2.1026 0.98 1713 148 0.1703 0.2316 REMARK 3 13 2.1026 - 2.0473 0.97 1671 126 0.1846 0.2279 REMARK 3 14 2.0473 - 1.9973 0.88 1489 128 0.2120 0.2583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3092 REMARK 3 ANGLE : 1.496 4193 REMARK 3 CHIRALITY : 0.072 458 REMARK 3 PLANARITY : 0.007 542 REMARK 3 DIHEDRAL : 16.012 1232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 2:102 OR RESSEQ 193:201 OR REMARK 3 RESSEQ 269:276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.917 -3.729 39.700 REMARK 3 T TENSOR REMARK 3 T11: 0.4793 T22: 0.4260 REMARK 3 T33: 0.5849 T12: 0.1240 REMARK 3 T13: -0.0176 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 2.5222 L22: 2.7209 REMARK 3 L33: 2.6685 L12: 0.0354 REMARK 3 L13: 0.0176 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.2246 S13: -0.7822 REMARK 3 S21: 0.2155 S22: -0.0737 S23: -0.8376 REMARK 3 S31: 0.6598 S32: 0.8082 S33: -0.0793 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 129:155 OR RESSEQ 167:173 OR REMARK 3 RESSEQ 202:213 OR RESSEQ 221:229 OR RESSEQ 258:259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.266 7.522 23.182 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.3812 REMARK 3 T33: 0.2321 T12: -0.0361 REMARK 3 T13: -0.0266 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.7541 L22: 1.4867 REMARK 3 L33: 2.2111 L12: 0.5447 REMARK 3 L13: -0.8301 L23: 0.2064 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.6494 S13: 0.0623 REMARK 3 S21: -0.3744 S22: 0.1539 S23: 0.0424 REMARK 3 S31: 0.1554 S32: -0.0718 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 174:187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.959 24.209 31.113 REMARK 3 T TENSOR REMARK 3 T11: 0.5165 T22: 0.3345 REMARK 3 T33: 0.6090 T12: -0.0093 REMARK 3 T13: 0.0693 T23: 0.1494 REMARK 3 L TENSOR REMARK 3 L11: 0.6141 L22: 0.3926 REMARK 3 L33: 0.8020 L12: 0.4773 REMARK 3 L13: 0.5809 L23: 0.5243 REMARK 3 S TENSOR REMARK 3 S11: 0.1991 S12: 0.3401 S13: 0.9329 REMARK 3 S21: -0.1235 S22: -0.1172 S23: -0.0073 REMARK 3 S31: -1.0945 S32: -0.1088 S33: -0.1596 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 103:128 OR RESSEQ 156:166 OR REMARK 3 RESSEQ 216:220 OR RESSEQ 233:257 OR RESSEQ 260:268 REMARK 3 OR RESSEQ 277:290 OR RESSEQ 330:357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.644 8.755 42.223 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.2304 REMARK 3 T33: 0.2611 T12: -0.0374 REMARK 3 T13: 0.0049 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 2.5261 L22: 2.2275 REMARK 3 L33: 2.6397 L12: 0.0705 REMARK 3 L13: -0.5488 L23: 0.5878 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: 0.0508 S13: 0.0775 REMARK 3 S21: 0.1759 S22: -0.0843 S23: 0.2617 REMARK 3 S31: 0.2349 S32: -0.3631 S33: -0.0027 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 293:310 OR RESSEQ 321:329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.009 10.588 53.768 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.3890 REMARK 3 T33: 0.3099 T12: -0.0158 REMARK 3 T13: -0.0427 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.6504 L22: 0.4745 REMARK 3 L33: 0.7228 L12: -0.3381 REMARK 3 L13: -0.1708 L23: -0.2323 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.4627 S13: -0.0767 REMARK 3 S21: 0.2973 S22: -0.0505 S23: -0.6607 REMARK 3 S31: 0.2771 S32: 0.3680 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESSEQ 403 REMARK 3 ORIGIN FOR THE GROUP (A): 31.215 6.107 41.313 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.4229 REMARK 3 T33: 0.3163 T12: -0.0977 REMARK 3 T13: -0.0928 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 8.9216 L22: 1.6038 REMARK 3 L33: 6.3532 L12: -2.8954 REMARK 3 L13: 7.4907 L23: -2.6329 REMARK 3 S TENSOR REMARK 3 S11: -0.2672 S12: -0.2727 S13: -0.0597 REMARK 3 S21: 0.1671 S22: -0.1665 S23: -0.1293 REMARK 3 S31: -0.0040 S32: -0.1155 S33: 0.0611 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESSEQ 401 REMARK 3 ORIGIN FOR THE GROUP (A): 25.547 8.097 39.463 REMARK 3 T TENSOR REMARK 3 T11: 0.4844 T22: 1.2964 REMARK 3 T33: 0.8287 T12: 0.2089 REMARK 3 T13: -0.1291 T23: -0.5890 REMARK 3 L TENSOR REMARK 3 L11: 1.4773 L22: 4.4982 REMARK 3 L33: 4.6053 L12: 2.3885 REMARK 3 L13: 2.1589 L23: 4.0745 REMARK 3 S TENSOR REMARK 3 S11: -0.4839 S12: 0.8462 S13: -0.6027 REMARK 3 S21: 0.1890 S22: 0.9305 S23: -0.7494 REMARK 3 S31: -0.0949 S32: -0.5933 S33: -0.4847 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 400 AND ( NAME N1 OR NAME C2 OR REMARK 3 NAME N3 OR NAME C4 OR NAME C5 OR NAME C6 OR NAME N6 REMARK 3 OR NAME N7 OR NAME C8 OR NAME N9 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.278 16.768 41.803 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.2849 REMARK 3 T33: 0.3184 T12: 0.0730 REMARK 3 T13: -0.0333 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 6.9499 L22: 7.0784 REMARK 3 L33: 3.8538 L12: -6.9291 REMARK 3 L13: 0.1915 L23: -0.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: 0.1501 S13: 0.4542 REMARK 3 S21: 0.0349 S22: 0.1666 S23: -0.2012 REMARK 3 S31: -0.1227 S32: -0.2417 S33: -0.1182 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 400 AND ( NAME C1' OR NAME C2' REMARK 3 OR NAME O2' OR NAME C3' OR NAME O3' OR NAME C4' OR REMARK 3 NAME O4' OR NAME C5' OR NAME O5' ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.639 16.480 39.243 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.2546 REMARK 3 T33: 0.3003 T12: -0.0708 REMARK 3 T13: -0.0041 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: -6.8018 REMARK 3 L13: 4.3081 L23: 3.2131 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.2196 S13: 0.0879 REMARK 3 S21: 0.0090 S22: 0.1063 S23: 0.2005 REMARK 3 S31: -0.0468 S32: -0.0110 S33: 0.0465 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 400 AND ( NAME PA OR NAME O1A REMARK 3 OR NAME O2A OR NAME O3A OR NAME PB OR NAME O1B OR REMARK 3 NAME O2B OR NAME O3B ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.667 11.587 39.168 REMARK 3 T TENSOR REMARK 3 T11: 0.3252 T22: 0.2783 REMARK 3 T33: 0.2627 T12: -0.0525 REMARK 3 T13: -0.0175 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 6.7194 L22: 6.5961 REMARK 3 L33: 5.8182 L12: 6.4314 REMARK 3 L13: 6.1794 L23: 6.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.4178 S12: -0.1663 S13: 0.0718 REMARK 3 S21: -0.4156 S22: -0.2180 S23: 0.1831 REMARK 3 S31: -0.3385 S32: -0.3516 S33: 0.3930 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.997 REMARK 200 RESOLUTION RANGE LOW (A) : 36.023 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM HEPES, PH 7.5 18% PEG 6000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.01900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.11850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.02350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.11850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.01900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.02350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 312 O HOH A 501 1.73 REMARK 500 OD1 ASP A 3 OG1 THR A 6 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 324 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 114 76.90 -155.60 REMARK 500 ASP A 161 -129.77 55.51 REMARK 500 GLU A 224 -116.09 -86.22 REMARK 500 THR A 278 12.78 58.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NO3 A 401 O1 REMARK 620 2 ADP A 404 O1B 80.0 REMARK 620 3 ADP A 404 O1A 86.7 89.8 REMARK 620 4 HOH A 523 O 170.8 106.3 86.6 REMARK 620 5 HOH A 567 O 85.7 165.4 86.0 87.5 REMARK 620 6 HOH A 605 O 95.8 92.4 176.9 90.7 92.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J99 RELATED DB: PDB DBREF 5J9A A 1 357 UNP P51541 KARG_LIMPO 1 357 SEQADV 5J9A GLN A 103 UNP P51541 GLU 103 ENGINEERED MUTATION SEQADV 5J9A GLY A 112 UNP P51541 ASP 112 ENGINEERED MUTATION SEQADV 5J9A ALA A 116 UNP P51541 GLY 116 ENGINEERED MUTATION SEQRES 1 A 357 MET VAL ASP GLN ALA THR LEU ASP LYS LEU GLU ALA GLY SEQRES 2 A 357 PHE LYS LYS LEU GLN GLU ALA SER ASP CYS LYS SER LEU SEQRES 3 A 357 LEU LYS LYS HIS LEU THR LYS ASP VAL PHE ASP SER ILE SEQRES 4 A 357 LYS ASN LYS LYS THR GLY MET GLY ALA THR LEU LEU ASP SEQRES 5 A 357 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 357 GLY ILE TYR ALA PRO ASP ALA GLU SER TYR ARG THR PHE SEQRES 7 A 357 GLY PRO LEU PHE ASP PRO ILE ILE ASP ASP TYR HIS GLY SEQRES 8 A 357 GLY PHE LYS LEU THR ASP LYS HIS PRO PRO LYS GLN TRP SEQRES 9 A 357 GLY ASP ILE ASN THR LEU VAL GLY LEU ASP PRO ALA GLY SEQRES 10 A 357 GLN PHE ILE ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 357 LEU GLN GLY TYR PRO PHE ASN PRO CYS LEU THR ALA GLU SEQRES 12 A 357 GLN TYR LYS GLU MET GLU GLU LYS VAL SER SER THR LEU SEQRES 13 A 357 SER SER MET GLU ASP GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 357 LEU THR GLY MET SER LYS ALA THR GLN GLN GLN LEU ILE SEQRES 15 A 357 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 357 GLN THR ALA ASN ALA CYS ARG TYR TRP PRO THR GLY ARG SEQRES 17 A 357 GLY ILE PHE HIS ASN ASP ALA LYS THR PHE LEU VAL TRP SEQRES 18 A 357 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 357 LYS GLY GLY ASP LEU LYS THR VAL TYR LYS ARG LEU VAL SEQRES 20 A 357 THR ALA VAL ASP ASN ILE GLU SER LYS LEU PRO PHE SER SEQRES 21 A 357 HIS ASP ASP ARG PHE GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 357 ASN LEU GLY THR THR MET ARG ALA SER VAL HIS ILE GLN SEQRES 23 A 357 LEU PRO LYS LEU ALA LYS ASP ARG LYS VAL LEU GLU ASP SEQRES 24 A 357 ILE ALA SER LYS PHE ASN LEU GLN VAL ARG GLY THR ARG SEQRES 25 A 357 GLY GLU HIS THR GLU SER GLU GLY GLY VAL TYR ASP ILE SEQRES 26 A 357 SER ASN LYS ARG ARG LEU GLY LEU THR GLU TYR GLN ALA SEQRES 27 A 357 VAL ARG GLU MET GLN ASP GLY ILE LEU GLU MET ILE LYS SEQRES 28 A 357 MET GLU LYS ALA ALA ALA HET NO3 A 401 4 HET MG A 402 1 HET ARG A 403 12 HET ADP A 404 27 HETNAM NO3 NITRATE ION HETNAM MG MAGNESIUM ION HETNAM ARG ARGININE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 NO3 N O3 1- FORMUL 3 MG MG 2+ FORMUL 4 ARG C6 H15 N4 O2 1+ FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *149(H2 O) HELIX 1 AA1 ASP A 3 ALA A 20 1 18 HELIX 2 AA2 SER A 25 LEU A 31 1 7 HELIX 3 AA3 THR A 32 LYS A 40 1 9 HELIX 4 AA4 THR A 49 ASN A 60 1 12 HELIX 5 AA5 GLU A 73 PHE A 78 1 6 HELIX 6 AA6 PHE A 78 HIS A 90 1 13 HELIX 7 AA7 ASP A 106 LEU A 110 5 5 HELIX 8 AA8 PHE A 136 LEU A 140 5 5 HELIX 9 AA9 THR A 141 SER A 157 1 17 HELIX 10 AB1 SER A 158 MET A 159 5 2 HELIX 11 AB2 GLU A 160 LYS A 164 5 5 HELIX 12 AB3 SER A 174 ASP A 184 1 11 HELIX 13 AB4 ASP A 192 ALA A 198 1 7 HELIX 14 AB5 ASP A 238 SER A 255 1 18 HELIX 15 AB6 CYS A 271 LEU A 275 5 5 HELIX 16 AB7 ASP A 293 PHE A 304 1 12 HELIX 17 AB8 THR A 334 ALA A 356 1 23 SHEET 1 AA1 8 THR A 166 PRO A 169 0 SHEET 2 AA1 8 GLY A 209 HIS A 212 -1 O ILE A 210 N TYR A 168 SHEET 3 AA1 8 PHE A 218 VAL A 222 -1 O VAL A 220 N PHE A 211 SHEET 4 AA1 8 LEU A 228 LYS A 235 -1 O ILE A 231 N LEU A 219 SHEET 5 AA1 8 ILE A 120 ARG A 129 -1 N VAL A 125 O SER A 232 SHEET 6 AA1 8 ARG A 280 ILE A 285 -1 O HIS A 284 N ILE A 121 SHEET 7 AA1 8 TYR A 323 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 AA1 8 LEU A 306 ARG A 309 -1 N ARG A 309 O ASP A 324 SHEET 1 AA2 2 HIS A 261 ASP A 262 0 SHEET 2 AA2 2 GLY A 266 PHE A 267 -1 O GLY A 266 N ASP A 262 LINK O1 NO3 A 401 MG MG A 402 1555 1555 2.69 LINK MG MG A 402 O1B ADP A 404 1555 1555 2.05 LINK MG MG A 402 O1A ADP A 404 1555 1555 2.12 LINK MG MG A 402 O HOH A 523 1555 1555 2.10 LINK MG MG A 402 O HOH A 567 1555 1555 2.13 LINK MG MG A 402 O HOH A 605 1555 1555 2.08 CISPEP 1 TRP A 204 PRO A 205 0 4.31 SITE 1 AC1 10 ARG A 126 GLU A 225 ARG A 229 ASN A 274 SITE 2 AC1 10 ARG A 309 GLU A 314 MG A 402 ARG A 403 SITE 3 AC1 10 ADP A 404 HOH A 520 SITE 1 AC2 5 NO3 A 401 ADP A 404 HOH A 523 HOH A 567 SITE 2 AC2 5 HOH A 605 SITE 1 AC3 16 SER A 63 GLY A 64 VAL A 65 GLY A 66 SITE 2 AC3 16 TYR A 68 GLU A 225 CYS A 271 THR A 273 SITE 3 AC3 16 ASN A 274 GLU A 314 HIS A 315 NO3 A 401 SITE 4 AC3 16 HOH A 508 HOH A 530 HOH A 563 HOH A 577 SITE 1 AC4 27 SER A 122 ARG A 124 ARG A 126 HIS A 185 SITE 2 AC4 27 TRP A 221 ARG A 229 MET A 233 ARG A 280 SITE 3 AC4 27 SER A 282 VAL A 283 HIS A 284 ARG A 309 SITE 4 AC4 27 THR A 311 ARG A 312 GLY A 313 GLU A 314 SITE 5 AC4 27 ASP A 324 NO3 A 401 MG A 402 HOH A 523 SITE 6 AC4 27 HOH A 535 HOH A 555 HOH A 558 HOH A 560 SITE 7 AC4 27 HOH A 567 HOH A 597 HOH A 605 CRYST1 66.038 72.047 80.237 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012463 0.00000