HEADER OXIDOREDUCTASE 10-APR-16 5J9G TITLE STRUCTURE OF LACTOBACILLUS ACIDOPHILUS GLYCERALDEHYDE-3-PHOSPHATE TITLE 2 DEHYDROGENASE AT 2.21 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-P DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS (STRAIN ATCC 700396 / SOURCE 3 NCK56 / N2 / NCFM); SOURCE 4 ORGANISM_TAXID: 272621; SOURCE 5 STRAIN: ATCC 700396 / NCK56 / N2 / NCFM; SOURCE 6 GENE: LBA0698; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GAPDH, LACTOBACILLUS ACIDOPHILUS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.PATEL,A.PAPPACHAN,D.D.SINGH REVDAT 2 08-NOV-23 5J9G 1 REMARK REVDAT 1 19-APR-17 5J9G 0 JRNL AUTH D.PATEL,A.PAPPACHAN,D.D.SINGH JRNL TITL STRUCTURE OF LACTOBACILLUS ACIDOPHILUS JRNL TITL 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 2.21 ANGSTROM JRNL TITL 3 RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 35675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2633 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5214 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5034 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7084 ; 1.525 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11588 ; 1.200 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 6.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;42.279 ;24.906 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;12.569 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5920 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1120 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2702 ; 0.864 ; 2.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2701 ; 0.865 ; 2.885 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3374 ; 1.487 ; 4.324 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3375 ; 1.487 ; 4.324 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2512 ; 0.877 ; 2.982 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2513 ; 0.877 ; 2.982 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3711 ; 1.449 ; 4.419 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5439 ; 2.824 ;22.383 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5430 ; 2.798 ;22.352 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 338 B 1 338 41688 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9000 27.8500 14.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.1277 REMARK 3 T33: 0.0935 T12: -0.0311 REMARK 3 T13: 0.0373 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 0.9443 L22: 1.1974 REMARK 3 L33: 0.9639 L12: 0.1236 REMARK 3 L13: -0.1449 L23: 0.2050 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.2061 S13: -0.0226 REMARK 3 S21: 0.2165 S22: -0.0155 S23: 0.2375 REMARK 3 S31: -0.0039 S32: -0.1813 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 338 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5410 51.1980 -10.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.0826 REMARK 3 T33: 0.0802 T12: -0.0495 REMARK 3 T13: 0.0497 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.5249 L22: 0.9384 REMARK 3 L33: 0.8699 L12: -0.1163 REMARK 3 L13: 0.0721 L23: -0.0251 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.2245 S13: 0.2649 REMARK 3 S21: -0.1904 S22: 0.0023 S23: 0.0099 REMARK 3 S31: -0.2683 S32: -0.0065 S33: -0.0361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000218663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 1.0.7 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38437 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 38.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4QX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 1000, 10% W/V PEG 8000, PH REMARK 280 7.4, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.65000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.49500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.32500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.49500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.97500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.32500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.97500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 330 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 330 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 330 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 330 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 56.66 -99.76 REMARK 500 THR A 106 45.36 -91.78 REMARK 500 SER A 125 46.82 -83.34 REMARK 500 SER A 138 -13.59 83.83 REMARK 500 ASN A 140 25.12 -144.80 REMARK 500 PHE B 10 57.60 -101.57 REMARK 500 SER B 28 -26.01 88.12 REMARK 500 THR B 106 45.94 -92.19 REMARK 500 SER B 125 46.10 -83.19 REMARK 500 SER B 138 -11.25 84.29 REMARK 500 ASN B 140 24.45 -142.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 5J9G A 1 338 UNP Q5FL51 Q5FL51_LACAC 1 338 DBREF 5J9G B 1 338 UNP Q5FL51 Q5FL51_LACAC 1 338 SEQRES 1 A 338 MET THR VAL LYS ILE GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 338 GLY ARG LEU ALA PHE ARG ARG ILE MET ASP LEU GLY GLU SEQRES 3 A 338 LYS SER LYS ASP ILE GLU VAL VAL ALA ILE ASN ASP LEU SEQRES 4 A 338 THR THR PRO ALA LEU LEU ALA HIS LEU LEU LYS TYR ASP SEQRES 5 A 338 SER THR HIS GLY THR PHE ASP HIS GLU VAL SER SER THR SEQRES 6 A 338 GLU ASP SER ILE VAL VAL ASP GLY LYS LYS TYR ARG VAL SEQRES 7 A 338 TYR ALA GLU PRO GLN ALA GLN ASN ILE PRO TRP VAL LYS SEQRES 8 A 338 ASN ASP GLY VAL ASP PHE VAL LEU GLU CYS THR GLY PHE SEQRES 9 A 338 TYR THR SER LYS ALA LYS SER GLN ALA HIS LEU ASP ALA SEQRES 10 A 338 GLY VAL LYS ARG VAL LEU ILE SER ALA PRO ALA GLY ASN SEQRES 11 A 338 ASP LEU LYS THR ILE VAL TYR SER VAL ASN GLN ASP THR SEQRES 12 A 338 LEU THR ALA ASP ASP LYS ILE VAL SER ALA GLY SER CYS SEQRES 13 A 338 THR THR ASN SER LEU ALA PRO MET VAL ASN ALA LEU GLN SEQRES 14 A 338 LYS GLU PHE GLY ILE GLU VAL GLY THR MET THR THR ILE SEQRES 15 A 338 HIS ALA TYR THR SER THR GLN MET ILE LEU ASP GLY PRO SEQRES 16 A 338 VAL ARG GLY GLY ASN LEU ARG ALA ALA ARG ALA ALA ALA SEQRES 17 A 338 ILE ASN ILE ILE PRO HIS SER THR GLY ALA ALA LYS ALA SEQRES 18 A 338 ILE GLY LEU VAL ILE PRO GLU LEU ASN GLY LYS LEU ASN SEQRES 19 A 338 GLY HIS ALA GLN ARG VAL PRO VAL PRO ASP GLY SER VAL SEQRES 20 A 338 THR GLU LEU VAL SER ILE LEU GLY LYS ASN VAL THR ALA SEQRES 21 A 338 ASP GLU VAL ASN GLU ALA MET LYS LYS TYR GLU SER PRO SEQRES 22 A 338 SER PHE GLU TYR GLU PRO ASN ASN VAL VAL SER SER ASP SEQRES 23 A 338 ILE LEU GLY ARG THR ALA GLY SER ILE PHE ASP PRO THR SEQRES 24 A 338 GLN THR MET VAL THR THR ALA GLY ASP LYS GLN LEU VAL SEQRES 25 A 338 LYS THR VAL ALA TRP TYR ASP ASN GLU TYR SER PHE THR SEQRES 26 A 338 CYS GLN MET VAL ARG THR LEU LEU HIS PHE ALA THR LEU SEQRES 1 B 338 MET THR VAL LYS ILE GLY ILE ASN GLY PHE GLY ARG ILE SEQRES 2 B 338 GLY ARG LEU ALA PHE ARG ARG ILE MET ASP LEU GLY GLU SEQRES 3 B 338 LYS SER LYS ASP ILE GLU VAL VAL ALA ILE ASN ASP LEU SEQRES 4 B 338 THR THR PRO ALA LEU LEU ALA HIS LEU LEU LYS TYR ASP SEQRES 5 B 338 SER THR HIS GLY THR PHE ASP HIS GLU VAL SER SER THR SEQRES 6 B 338 GLU ASP SER ILE VAL VAL ASP GLY LYS LYS TYR ARG VAL SEQRES 7 B 338 TYR ALA GLU PRO GLN ALA GLN ASN ILE PRO TRP VAL LYS SEQRES 8 B 338 ASN ASP GLY VAL ASP PHE VAL LEU GLU CYS THR GLY PHE SEQRES 9 B 338 TYR THR SER LYS ALA LYS SER GLN ALA HIS LEU ASP ALA SEQRES 10 B 338 GLY VAL LYS ARG VAL LEU ILE SER ALA PRO ALA GLY ASN SEQRES 11 B 338 ASP LEU LYS THR ILE VAL TYR SER VAL ASN GLN ASP THR SEQRES 12 B 338 LEU THR ALA ASP ASP LYS ILE VAL SER ALA GLY SER CYS SEQRES 13 B 338 THR THR ASN SER LEU ALA PRO MET VAL ASN ALA LEU GLN SEQRES 14 B 338 LYS GLU PHE GLY ILE GLU VAL GLY THR MET THR THR ILE SEQRES 15 B 338 HIS ALA TYR THR SER THR GLN MET ILE LEU ASP GLY PRO SEQRES 16 B 338 VAL ARG GLY GLY ASN LEU ARG ALA ALA ARG ALA ALA ALA SEQRES 17 B 338 ILE ASN ILE ILE PRO HIS SER THR GLY ALA ALA LYS ALA SEQRES 18 B 338 ILE GLY LEU VAL ILE PRO GLU LEU ASN GLY LYS LEU ASN SEQRES 19 B 338 GLY HIS ALA GLN ARG VAL PRO VAL PRO ASP GLY SER VAL SEQRES 20 B 338 THR GLU LEU VAL SER ILE LEU GLY LYS ASN VAL THR ALA SEQRES 21 B 338 ASP GLU VAL ASN GLU ALA MET LYS LYS TYR GLU SER PRO SEQRES 22 B 338 SER PHE GLU TYR GLU PRO ASN ASN VAL VAL SER SER ASP SEQRES 23 B 338 ILE LEU GLY ARG THR ALA GLY SER ILE PHE ASP PRO THR SEQRES 24 B 338 GLN THR MET VAL THR THR ALA GLY ASP LYS GLN LEU VAL SEQRES 25 B 338 LYS THR VAL ALA TRP TYR ASP ASN GLU TYR SER PHE THR SEQRES 26 B 338 CYS GLN MET VAL ARG THR LEU LEU HIS PHE ALA THR LEU FORMUL 3 HOH *89(H2 O) HELIX 1 AA1 GLY A 11 LYS A 27 1 17 HELIX 2 AA2 THR A 41 TYR A 51 1 11 HELIX 3 AA3 GLN A 83 ILE A 87 5 5 HELIX 4 AA4 PRO A 88 GLY A 94 1 7 HELIX 5 AA5 SER A 107 ALA A 117 1 11 HELIX 6 AA6 ASN A 140 LEU A 144 5 5 HELIX 7 AA7 SER A 155 PHE A 172 1 18 HELIX 8 AA8 ALA A 206 ASN A 210 5 5 HELIX 9 AA9 ALA A 221 VAL A 225 5 5 HELIX 10 AB1 ILE A 226 ASN A 230 5 5 HELIX 11 AB2 THR A 259 TYR A 270 1 12 HELIX 12 AB3 VAL A 283 LEU A 288 5 6 HELIX 13 AB4 PRO A 298 THR A 301 5 4 HELIX 14 AB5 GLU A 321 ALA A 336 1 16 HELIX 15 AB6 GLY B 11 LYS B 27 1 17 HELIX 16 AB7 THR B 41 TYR B 51 1 11 HELIX 17 AB8 GLN B 83 ILE B 87 5 5 HELIX 18 AB9 PRO B 88 GLY B 94 1 7 HELIX 19 AC1 SER B 107 ALA B 117 1 11 HELIX 20 AC2 ASN B 140 LEU B 144 5 5 HELIX 21 AC3 SER B 155 PHE B 172 1 18 HELIX 22 AC4 ALA B 206 ASN B 210 5 5 HELIX 23 AC5 ALA B 221 VAL B 225 5 5 HELIX 24 AC6 ILE B 226 ASN B 230 5 5 HELIX 25 AC7 THR B 259 TYR B 270 1 12 HELIX 26 AC8 VAL B 283 LEU B 288 5 6 HELIX 27 AC9 PRO B 298 THR B 301 5 4 HELIX 28 AD1 GLU B 321 ALA B 336 1 16 SHEET 1 AA1 9 VAL A 62 SER A 64 0 SHEET 2 AA1 9 SER A 68 VAL A 71 -1 O VAL A 70 N SER A 63 SHEET 3 AA1 9 LYS A 74 TYR A 79 -1 O TYR A 76 N ILE A 69 SHEET 4 AA1 9 ILE A 31 ASN A 37 1 N ILE A 36 O ARG A 77 SHEET 5 AA1 9 VAL A 3 ASN A 8 1 N ILE A 5 O GLU A 32 SHEET 6 AA1 9 PHE A 97 GLU A 100 1 O LEU A 99 N ASN A 8 SHEET 7 AA1 9 ARG A 121 ILE A 124 1 O LEU A 123 N VAL A 98 SHEET 8 AA1 9 ILE A 150 SER A 152 1 O VAL A 151 N ILE A 124 SHEET 9 AA1 9 LYS A 133 THR A 134 1 N LYS A 133 O SER A 152 SHEET 1 AA2 7 ILE A 212 HIS A 214 0 SHEET 2 AA2 7 LEU A 233 VAL A 240 -1 O ARG A 239 N ILE A 212 SHEET 3 AA2 7 ILE A 174 ALA A 184 1 N HIS A 183 O GLN A 238 SHEET 4 AA2 7 SER A 246 LEU A 254 -1 O GLU A 249 N THR A 180 SHEET 5 AA2 7 LYS A 309 TYR A 318 -1 O ALA A 316 N THR A 248 SHEET 6 AA2 7 SER A 294 PHE A 296 -1 N ILE A 295 O TRP A 317 SHEET 7 AA2 7 PHE A 275 TYR A 277 1 N GLU A 276 O PHE A 296 SHEET 1 AA3 6 ILE A 212 HIS A 214 0 SHEET 2 AA3 6 LEU A 233 VAL A 240 -1 O ARG A 239 N ILE A 212 SHEET 3 AA3 6 ILE A 174 ALA A 184 1 N HIS A 183 O GLN A 238 SHEET 4 AA3 6 SER A 246 LEU A 254 -1 O GLU A 249 N THR A 180 SHEET 5 AA3 6 LYS A 309 TYR A 318 -1 O ALA A 316 N THR A 248 SHEET 6 AA3 6 MET A 302 ALA A 306 -1 N MET A 302 O LYS A 313 SHEET 1 AA4 9 VAL B 62 SER B 64 0 SHEET 2 AA4 9 SER B 68 VAL B 71 -1 O VAL B 70 N SER B 63 SHEET 3 AA4 9 LYS B 74 TYR B 79 -1 O TYR B 76 N ILE B 69 SHEET 4 AA4 9 ILE B 31 ASN B 37 1 N ILE B 36 O ARG B 77 SHEET 5 AA4 9 VAL B 3 ASN B 8 1 N ILE B 5 O GLU B 32 SHEET 6 AA4 9 PHE B 97 GLU B 100 1 O LEU B 99 N ASN B 8 SHEET 7 AA4 9 ARG B 121 ILE B 124 1 O LEU B 123 N VAL B 98 SHEET 8 AA4 9 ILE B 150 SER B 152 1 O VAL B 151 N ILE B 124 SHEET 9 AA4 9 LYS B 133 THR B 134 1 N LYS B 133 O SER B 152 SHEET 1 AA5 7 ILE B 212 HIS B 214 0 SHEET 2 AA5 7 LEU B 233 VAL B 240 -1 O ARG B 239 N ILE B 212 SHEET 3 AA5 7 ILE B 174 ALA B 184 1 N HIS B 183 O GLN B 238 SHEET 4 AA5 7 SER B 246 LEU B 254 -1 O GLU B 249 N THR B 180 SHEET 5 AA5 7 LYS B 309 TYR B 318 -1 O ALA B 316 N THR B 248 SHEET 6 AA5 7 SER B 294 PHE B 296 -1 N ILE B 295 O TRP B 317 SHEET 7 AA5 7 PHE B 275 TYR B 277 1 N GLU B 276 O PHE B 296 SHEET 1 AA6 6 ILE B 212 HIS B 214 0 SHEET 2 AA6 6 LEU B 233 VAL B 240 -1 O ARG B 239 N ILE B 212 SHEET 3 AA6 6 ILE B 174 ALA B 184 1 N HIS B 183 O GLN B 238 SHEET 4 AA6 6 SER B 246 LEU B 254 -1 O GLU B 249 N THR B 180 SHEET 5 AA6 6 LYS B 309 TYR B 318 -1 O ALA B 316 N THR B 248 SHEET 6 AA6 6 MET B 302 ALA B 306 -1 N MET B 302 O LYS B 313 CRYST1 114.990 114.990 113.300 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008826 0.00000