HEADER TRANSCRIPTION 10-APR-16 5J9K TITLE CRYSTAL STRUCTURE OF THE RICE TOPLESS RELATED PROTEIN 2 (TPR2) N- TITLE 2 TERMINAL TOPLESS DOMAIN (1-209) IN COMPLEX WITH RICE D53 REPRESSOR TITLE 3 EAR PEPTIDE MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TPR1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL TOPLESS DOMAIN (UNP RESIDUES 1-209); COMPND 5 SYNONYM: ABERRANT SPIKELET AND PANICLE1-RELATED 2,PROTEIN ASP1- COMPND 6 RELATED 2,OSASPR2,TOPLESS-RELATED PROTEIN 1,TOPLESS-RELATED PROTEIN COMPND 7 2,OSTPR2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RICE D53 PEPTIDE 794-808; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNLIYLDLNLQ SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: TPR1, ASPR2, TPR2, OS01G0254100, LOC_OS01G15020, OSJ_01134, SOURCE 6 OSNPB_010254100, P0705D01.10-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 11 ORGANISM_COMMON: RICE; SOURCE 12 ORGANISM_TAXID: 4530; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REPRESSION, TRANSCRIPTIONAL COREPRESSOR TOPLESS, ALPHA- KEYWDS 2 HELICAL STRUCTURE, TETRAMER, TRANSCRIPTIONAL REPRESSOR D53, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.KE,H.MA,X.GU,J.S.BRUNZELLE,H.E.XU,K.MELCHER REVDAT 4 06-MAR-24 5J9K 1 REMARK REVDAT 3 25-DEC-19 5J9K 1 REMARK REVDAT 2 27-SEP-17 5J9K 1 REMARK REVDAT 1 05-JUL-17 5J9K 0 JRNL AUTH H.MA,J.DUAN,J.KE,Y.HE,X.GU,T.H.XU,H.YU,Y.WANG,J.S.BRUNZELLE, JRNL AUTH 2 Y.JIANG,S.B.ROTHBART,H.E.XU,J.LI,K.MELCHER JRNL TITL A D53 REPRESSION MOTIF INDUCES OLIGOMERIZATION OF TOPLESS JRNL TITL 2 COREPRESSORS AND PROMOTES ASSEMBLY OF A JRNL TITL 3 COREPRESSOR-NUCLEOSOME COMPLEX. JRNL REF SCI ADV V. 3 01217 2017 JRNL REFN ESSN 2375-2548 JRNL PMID 28630893 JRNL DOI 10.1126/SCIADV.1601217 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.KE,H.MA,X.GU,A.THELEN,J.S.BRUNZELLE,J.LI,H.E.XU,K.MELCHER REMARK 1 TITL STRUCTURAL BASIS FOR RECOGNITION OF DIVERSE TRANSCRIPTIONAL REMARK 1 TITL 2 REPRESSORS BY THE TOPLESS FAMILY OF COREPRESSORS. REMARK 1 REF SCI ADV V. 1 00107 2015 REMARK 1 REFN ESSN 2375-2548 REMARK 1 PMID 26601214 REMARK 1 DOI 10.1126/SCIADV.1500107 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3801 - 6.1351 0.99 2513 125 0.1723 0.2158 REMARK 3 2 6.1351 - 4.8740 0.99 2495 125 0.2056 0.2344 REMARK 3 3 4.8740 - 4.2592 1.00 2514 129 0.1758 0.2164 REMARK 3 4 4.2592 - 3.8704 0.99 2527 137 0.1756 0.2000 REMARK 3 5 3.8704 - 3.5933 1.00 2501 136 0.2104 0.2072 REMARK 3 6 3.5933 - 3.3816 0.99 2513 149 0.2289 0.3045 REMARK 3 7 3.3816 - 3.2124 0.99 2488 130 0.2379 0.3036 REMARK 3 8 3.2124 - 3.0726 0.99 2488 147 0.2499 0.3118 REMARK 3 9 3.0726 - 2.9544 0.99 2518 140 0.2693 0.2905 REMARK 3 10 2.9544 - 2.8525 1.00 2516 127 0.2854 0.3325 REMARK 3 11 2.8525 - 2.7634 0.99 2497 116 0.2977 0.3198 REMARK 3 12 2.7634 - 2.6844 0.99 2480 157 0.3084 0.3556 REMARK 3 13 2.6844 - 2.6138 1.00 2475 158 0.3262 0.3624 REMARK 3 14 2.6138 - 2.5500 0.98 2521 114 0.3519 0.3849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3617 REMARK 3 ANGLE : 0.980 4855 REMARK 3 CHIRALITY : 0.033 540 REMARK 3 PLANARITY : 0.003 612 REMARK 3 DIHEDRAL : 15.891 1380 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19882 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.94900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V POLYETHYLENE GLYCOL 3350, 0.2 REMARK 280 M AMMONIUM SULFATE, 0.1 M BIS-TRIS, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.85900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.81900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.85900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.81900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 206 REMARK 465 PRO A 207 REMARK 465 ASN A 208 REMARK 465 GLY A 209 REMARK 465 PRO B 191 REMARK 465 ASN B 192 REMARK 465 PRO B 206 REMARK 465 PRO B 207 REMARK 465 ASN B 208 REMARK 465 GLY B 209 REMARK 465 ASP C 794 REMARK 465 GLN C 804 REMARK 465 ASP C 805 REMARK 465 TRP C 806 REMARK 465 ASP C 807 REMARK 465 ASP C 808 REMARK 465 ASP D 794 REMARK 465 LEU D 803 REMARK 465 GLN D 804 REMARK 465 ASP D 805 REMARK 465 TRP D 806 REMARK 465 ASP D 807 REMARK 465 ASP D 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 188 CG OD1 ND2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 192 CG OD1 ND2 REMARK 470 THR A 205 OG1 CG2 REMARK 470 TYR B 133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 THR B 205 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 137 O ASN A 192 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 189 C - N - CA ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 108 89.09 -152.20 REMARK 500 GLN B 117 2.51 -68.97 REMARK 500 SER B 131 1.24 -69.83 REMARK 500 GLU B 159 33.90 -99.78 REMARK 500 ASP B 194 59.34 -108.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 ND1 REMARK 620 2 CYS A 186 SG 126.7 REMARK 620 3 HIS A 202 NE2 97.6 91.5 REMARK 620 4 CYS A 204 SG 114.5 116.9 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 183 ND1 REMARK 620 2 CYS B 186 SG 95.4 REMARK 620 3 HIS B 202 NE2 87.7 75.8 REMARK 620 4 CYS B 204 SG 139.5 123.7 110.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JA5 RELATED DB: PDB REMARK 900 RELATED ID: 5JGC RELATED DB: PDB REMARK 900 RELATED ID: 5JHP RELATED DB: PDB DBREF 5J9K A 1 209 UNP Q5NBT9 TPR1_ORYSJ 1 209 DBREF 5J9K B 1 209 UNP Q5NBT9 TPR1_ORYSJ 1 209 DBREF 5J9K C 794 808 PDB 5J9K 5J9K 794 808 DBREF 5J9K D 794 808 PDB 5J9K 5J9K 794 808 SEQRES 1 A 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 A 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 A 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 A 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 A 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 A 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 A 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 A 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 A 209 SER THR PHE ASN GLU GLU LEU TYR LYS GLU ILE THR GLN SEQRES 10 A 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN LEU SEQRES 11 A 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 A 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 A 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 A 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 A 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 A 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 A 209 GLY SEQRES 1 B 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 B 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 B 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 B 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 B 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 B 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 B 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 B 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 B 209 SER THR PHE ASN GLU GLU LEU TYR LYS GLU ILE THR GLN SEQRES 10 B 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN LEU SEQRES 11 B 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 B 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 B 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 B 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 B 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 B 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 B 209 GLY SEQRES 1 C 15 ASP ASN LEU ILE TYR LEU ASP LEU ASN LEU GLN ASP TRP SEQRES 2 C 15 ASP ASP SEQRES 1 D 15 ASP ASN LEU ILE TYR LEU ASP LEU ASN LEU GLN ASP TRP SEQRES 2 D 15 ASP ASP HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *87(H2 O) HELIX 1 AA1 SER A 2 GLU A 19 1 18 HELIX 2 AA2 PHE A 21 GLY A 33 1 13 HELIX 3 AA3 ASN A 37 ALA A 47 1 11 HELIX 4 AA4 GLU A 49 SER A 58 1 10 HELIX 5 AA5 ASN A 66 ARG A 87 1 22 HELIX 6 AA6 ASP A 89 ASP A 100 1 12 HELIX 7 AA7 LEU A 101 SER A 105 5 5 HELIX 8 AA8 ASN A 108 GLN A 117 1 10 HELIX 9 AA9 LEU A 118 LEU A 121 5 4 HELIX 10 AB1 ASN A 123 ASN A 127 5 5 HELIX 11 AB2 ASP A 135 ASN A 154 1 20 HELIX 12 AB3 SER A 169 LEU A 185 1 17 HELIX 13 AB4 SER B 2 GLU B 19 1 18 HELIX 14 AB5 PHE B 21 GLY B 33 1 13 HELIX 15 AB6 ASN B 37 ALA B 47 1 11 HELIX 16 AB7 GLU B 49 SER B 58 1 10 HELIX 17 AB8 ASN B 66 ARG B 87 1 22 HELIX 18 AB9 ASP B 89 ASP B 100 1 12 HELIX 19 AC1 LEU B 101 SER B 105 5 5 HELIX 20 AC2 ASN B 108 GLN B 117 1 10 HELIX 21 AC3 ASN B 123 ASN B 127 5 5 HELIX 22 AC4 ASP B 135 ASN B 154 1 20 HELIX 23 AC5 PRO B 155 LEU B 161 5 7 HELIX 24 AC6 SER B 169 GLN B 184 1 16 LINK ND1 HIS A 183 ZN ZN A 401 1555 1555 2.11 LINK SG CYS A 186 ZN ZN A 401 1555 1555 2.47 LINK NE2 HIS A 202 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 204 ZN ZN A 401 1555 1555 2.80 LINK ND1 HIS B 183 ZN ZN B 401 1555 1555 2.13 LINK SG CYS B 186 ZN ZN B 401 1555 1555 2.25 LINK NE2 HIS B 202 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 204 ZN ZN B 401 1555 1555 2.34 CISPEP 1 PRO A 189 ARG A 190 0 2.89 CISPEP 2 GLY B 134 ASP B 135 0 -5.61 CISPEP 3 LYS B 187 ASN B 188 0 22.27 CISPEP 4 PRO B 189 ARG B 190 0 -22.55 CISPEP 5 LEU D 801 ASN D 802 0 0.14 SITE 1 AC1 4 HIS A 183 CYS A 186 HIS A 202 CYS A 204 SITE 1 AC2 4 HIS B 183 CYS B 186 HIS B 202 CYS B 204 CRYST1 57.718 59.638 171.183 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005842 0.00000