HEADER TRANSCRIPTION 12-APR-16 5JA5 TITLE CRYSTAL STRUCTURE OF THE RICE TOPLESS RELATED PROTEIN 2 (TPR2) N- TITLE 2 TERMINAL TOPLESS DOMAIN (1-209) L111A AND L130A MUTANT IN COMPLEX TITLE 3 WITH RICE D53 REPRESSOR EAR PEPTIDE MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TPR1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TOPLESS DOMAIN (UNP RESIDUES 1-209); COMPND 5 SYNONYM: ABERRANT SPIKELET AND PANICLE1-RELATED 2,PROTEIN ASP1- COMPND 6 RELATED 2,OSASPR2,TOPLESS-RELATED PROTEIN 1,TOPLESS-RELATED PROTEIN COMPND 7 2,OSTPR2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THE RICE D53 PEPTIDE (A.A. 794-808); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: TPR1, ASPR2, TPR2, OS01G0254100, LOC_OS01G15020, OSJ_01134, SOURCE 6 OSNPB_010254100, P0705D01.10-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 12 ORGANISM_COMMON: RICE; SOURCE 13 ORGANISM_TAXID: 4530 KEYWDS TRANSCRIPTION REPRESSION, TRANSCRIPTIONAL COREPRESSOR TOPLESS, ALPHA- KEYWDS 2 HELICAL STRUCTURE, TETRAMER, TRANSCRIPTIONAL REPRESSOR D53, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.KE,H.MA,X.GU,J.S.BRUNZELLE,H.E.XU,K.MELCHER REVDAT 4 27-SEP-23 5JA5 1 REMARK REVDAT 3 25-DEC-19 5JA5 1 REMARK REVDAT 2 27-SEP-17 5JA5 1 REMARK REVDAT 1 05-JUL-17 5JA5 0 JRNL AUTH H.MA,J.DUAN,J.KE,Y.HE,X.GU,T.H.XU,H.YU,Y.WANG,J.S.BRUNZELLE, JRNL AUTH 2 Y.JIANG,S.B.ROTHBART,H.E.XU,J.LI,K.MELCHER JRNL TITL A D53 REPRESSION MOTIF INDUCES OLIGOMERIZATION OF TOPLESS JRNL TITL 2 COREPRESSORS AND PROMOTES ASSEMBLY OF A JRNL TITL 3 COREPRESSOR-NUCLEOSOME COMPLEX. JRNL REF SCI ADV V. 3 01217 2017 JRNL REFN ESSN 2375-2548 JRNL PMID 28630893 JRNL DOI 10.1126/SCIADV.1601217 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.KE,H.MA,X.GU,A.THELEN,J.S.BRUNZELLE,J.LI,H.E.XU,K.MELCHER REMARK 1 TITL STRUCTURAL BASIS FOR RECOGNITION OF DIVERSE TRANSCRIPTIONAL REMARK 1 TITL 2 REPRESSORS BY THE TOPLESS FAMILY OF COREPRESSORS. REMARK 1 REF SCI ADV V. 1 00107 2015 REMARK 1 REFN ESSN 2375-2548 REMARK 1 PMID 26601214 REMARK 1 DOI 10.1126/SCIADV.1500107 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6154 - 4.6971 1.00 2708 158 0.1987 0.2002 REMARK 3 2 4.6971 - 3.7305 1.00 2740 145 0.1673 0.2021 REMARK 3 3 3.7305 - 3.2597 1.00 2728 137 0.2074 0.1906 REMARK 3 4 3.2597 - 2.9619 1.00 2748 122 0.2082 0.2299 REMARK 3 5 2.9619 - 2.7498 1.00 2719 143 0.2061 0.2626 REMARK 3 6 2.7498 - 2.5878 1.00 2698 166 0.2091 0.2490 REMARK 3 7 2.5878 - 2.4582 1.00 2713 144 0.2032 0.2125 REMARK 3 8 2.4582 - 2.3513 1.00 2761 155 0.2021 0.2906 REMARK 3 9 2.3513 - 2.2608 1.00 2692 155 0.2073 0.2105 REMARK 3 10 2.2608 - 2.1828 1.00 2747 111 0.2670 0.3400 REMARK 3 11 2.1828 - 2.1146 1.00 2734 124 0.2216 0.2521 REMARK 3 12 2.1146 - 2.0541 1.00 2720 153 0.2413 0.3493 REMARK 3 13 2.0541 - 2.0001 1.00 2712 156 0.2682 0.3228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1764 REMARK 3 ANGLE : 0.847 2368 REMARK 3 CHIRALITY : 0.035 262 REMARK 3 PLANARITY : 0.003 299 REMARK 3 DIHEDRAL : 14.856 664 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.078 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.60 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZHE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V POLYETHYLENE GLYCOL 3350, 0.2 REMARK 280 M POTASSIUM PHOSPHATE MONOBASIC, PH 4.8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.65850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.65850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.74150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.65850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.65850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.74150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.65850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.65850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.74150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.65850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.65850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.74150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.31700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -57.31700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 57.31700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -57.31700 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 191 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 ASP A 194 REMARK 465 PRO A 206 REMARK 465 PRO A 207 REMARK 465 ASN A 208 REMARK 465 GLY A 209 REMARK 465 LEU B 801 REMARK 465 ASN B 802 REMARK 465 LEU B 803 REMARK 465 GLN B 804 REMARK 465 ASP B 805 REMARK 465 TRP B 806 REMARK 465 ASP B 807 REMARK 465 ASP B 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ASN A 188 CG OD1 ND2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LEU B 796 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 582 O HOH A 624 6444 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 75.56 -112.65 REMARK 500 ASN A 108 93.74 -165.09 REMARK 500 ASN B 795 103.99 -59.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 654 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 ND1 REMARK 620 2 CYS A 186 SG 150.5 REMARK 620 3 HIS A 202 NE2 91.9 99.1 REMARK 620 4 CYS A 204 SG 102.9 106.1 77.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J9K RELATED DB: PDB REMARK 900 RELATED ID: 5JGC RELATED DB: PDB REMARK 900 RELATED ID: 5JHP RELATED DB: PDB DBREF 5JA5 A 1 209 UNP Q5NBT9 TPR1_ORYSJ 1 209 DBREF 5JA5 B 794 808 PDB 5JA5 5JA5 794 808 SEQADV 5JA5 ALA A 111 UNP Q5NBT9 LEU 111 ENGINEERED MUTATION SEQADV 5JA5 ALA A 130 UNP Q5NBT9 LEU 130 ENGINEERED MUTATION SEQRES 1 A 209 MET SER SER LEU SER ARG GLU LEU VAL PHE LEU ILE LEU SEQRES 2 A 209 GLN PHE LEU ASP GLU GLU LYS PHE LYS GLU THR VAL HIS SEQRES 3 A 209 LYS LEU GLU GLN GLU SER GLY PHE PHE PHE ASN MET LYS SEQRES 4 A 209 TYR PHE GLU GLU LYS VAL HIS ALA GLY GLU TRP ASP GLU SEQRES 5 A 209 VAL GLU LYS TYR LEU SER GLY PHE THR LYS VAL ASP ASP SEQRES 6 A 209 ASN ARG TYR SER MET LYS ILE PHE PHE GLU ILE ARG LYS SEQRES 7 A 209 GLN LYS TYR LEU GLU ALA LEU ASP ARG HIS ASP ARG ALA SEQRES 8 A 209 LYS ALA VAL ASP ILE LEU VAL LYS ASP LEU LYS VAL PHE SEQRES 9 A 209 SER THR PHE ASN GLU GLU ALA TYR LYS GLU ILE THR GLN SEQRES 10 A 209 LEU LEU THR LEU GLU ASN PHE ARG GLU ASN GLU GLN ALA SEQRES 11 A 209 SER LYS TYR GLY ASP THR LYS SER ALA ARG SER ILE MET SEQRES 12 A 209 LEU ILE GLU LEU LYS LYS LEU ILE GLU ALA ASN PRO LEU SEQRES 13 A 209 PHE ARG GLU LYS LEU VAL PHE PRO THR LEU LYS ALA SER SEQRES 14 A 209 ARG LEU ARG THR LEU ILE ASN GLN SER LEU ASN TRP GLN SEQRES 15 A 209 HIS GLN LEU CYS LYS ASN PRO ARG PRO ASN PRO ASP ILE SEQRES 16 A 209 LYS THR LEU PHE THR ASP HIS THR CYS THR PRO PRO ASN SEQRES 17 A 209 GLY SEQRES 1 B 15 ASP ASN LEU ILE TYR LEU ASP LEU ASN LEU GLN ASP TRP SEQRES 2 B 15 ASP ASP HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *156(H2 O) HELIX 1 AA1 SER A 2 GLU A 19 1 18 HELIX 2 AA2 PHE A 21 GLY A 33 1 13 HELIX 3 AA3 ASN A 37 ALA A 47 1 11 HELIX 4 AA4 GLU A 49 SER A 58 1 10 HELIX 5 AA5 ASN A 66 ARG A 87 1 22 HELIX 6 AA6 ASP A 89 ASP A 100 1 12 HELIX 7 AA7 LEU A 101 SER A 105 5 5 HELIX 8 AA8 ASN A 108 LEU A 118 1 11 HELIX 9 AA9 LEU A 119 LEU A 121 5 3 HELIX 10 AB1 ASN A 123 ASN A 127 5 5 HELIX 11 AB2 ASP A 135 ASN A 154 1 20 HELIX 12 AB3 PRO A 155 ARG A 158 5 4 HELIX 13 AB4 SER A 169 LEU A 185 1 17 LINK ND1 HIS A 183 ZN ZN A 401 1555 1555 2.54 LINK SG CYS A 186 ZN ZN A 401 1555 1555 2.52 LINK NE2 HIS A 202 ZN ZN A 401 1555 1555 2.39 LINK SG CYS A 204 ZN ZN A 401 1555 1555 2.74 CISPEP 1 LYS A 187 ASN A 188 0 -1.00 SITE 1 AC1 4 HIS A 183 CYS A 186 HIS A 202 CYS A 204 CRYST1 57.317 57.317 173.483 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005764 0.00000