HEADER MEMBRANE PROTEIN 12-APR-16 5JAE TITLE LEUT IN THE OUTWARD-ORIENTED, NA+-FREE RETURN STATE, P21 FORM AT PH TITLE 2 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTER; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS (STRAIN VF5); SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: SNF, AQ_2077; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS MEMBRANE PROTEIN, NEUROTRANSMITTER:SODIUM SYMPORTER FAMILY, AMINO KEYWDS 2 ACID TRANSPORTER EXPDTA X-RAY DIFFRACTION AUTHOR L.MALINAUSKAITE,C.SAHIN,S.SAID,J.GROULEFF,A.SHAHSAVAR,H.BJERREGAARD, AUTHOR 2 P.NOER,K.SEVERINSEN,T.BOESEN,B.SCHIOTT,S.SINNING,P.NISSEN REVDAT 4 10-JAN-24 5JAE 1 HETSYN LINK REVDAT 3 29-JUL-20 5JAE 1 COMPND REMARK HETNAM SITE REVDAT 2 28-SEP-16 5JAE 1 REVDAT 1 01-JUN-16 5JAE 0 JRNL AUTH L.MALINAUSKAITE,S.SAID,C.SAHIN,J.GROULEFF,A.SHAHSAVAR, JRNL AUTH 2 H.BJERREGAARD,P.NOER,K.SEVERINSEN,T.BOESEN,B.SCHITT, JRNL AUTH 3 S.SINNING,P.NISSEN JRNL TITL A CONSERVED LEUCINE OCCUPIES THE EMPTY SUBSTRATE SITE OF JRNL TITL 2 LEUT IN THE NA(+)-FREE RETURN STATE. JRNL REF NAT COMMUN V. 7 11673 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27221344 JRNL DOI 10.1038/NCOMMS11673 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2283: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 46789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0542 - 4.7809 1.00 6691 147 0.1993 0.2040 REMARK 3 2 4.7809 - 3.7953 1.00 6616 145 0.1999 0.2347 REMARK 3 3 3.7953 - 3.3157 0.99 6544 143 0.2154 0.2516 REMARK 3 4 3.3157 - 3.0126 0.99 6541 145 0.2491 0.3104 REMARK 3 5 3.0126 - 2.7967 0.99 6466 141 0.2716 0.2959 REMARK 3 6 2.7967 - 2.6319 0.99 6497 141 0.3158 0.3353 REMARK 3 7 2.6319 - 2.5001 0.98 6434 138 0.3750 0.3700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8433 REMARK 3 ANGLE : 0.621 11470 REMARK 3 CHIRALITY : 0.040 1319 REMARK 3 PLANARITY : 0.005 1369 REMARK 3 DIHEDRAL : 15.060 4701 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 4:93 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3183 -0.1343 0.8614 REMARK 3 T TENSOR REMARK 3 T11: 0.6697 T22: 0.7446 REMARK 3 T33: 0.7609 T12: -0.0803 REMARK 3 T13: -0.0809 T23: -0.0798 REMARK 3 L TENSOR REMARK 3 L11: 3.2691 L22: 1.0728 REMARK 3 L33: 1.4402 L12: 0.8880 REMARK 3 L13: -0.2070 L23: -0.4227 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: 0.5891 S13: -0.1194 REMARK 3 S21: 0.0350 S22: 0.1648 S23: 0.3369 REMARK 3 S31: 0.2333 S32: 0.0498 S33: -0.1658 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 94:231 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6406 17.5196 14.1383 REMARK 3 T TENSOR REMARK 3 T11: 0.5496 T22: 0.6727 REMARK 3 T33: 0.6868 T12: 0.0076 REMARK 3 T13: 0.0349 T23: 0.1176 REMARK 3 L TENSOR REMARK 3 L11: 4.7946 L22: 1.8980 REMARK 3 L33: 1.1988 L12: -0.7222 REMARK 3 L13: 1.0143 L23: 1.1180 REMARK 3 S TENSOR REMARK 3 S11: -0.1268 S12: 0.2574 S13: 0.8537 REMARK 3 S21: -0.1656 S22: -0.0988 S23: 0.3031 REMARK 3 S31: -0.2696 S32: -0.3202 S33: 0.2702 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 232:461 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9671 7.1878 3.4771 REMARK 3 T TENSOR REMARK 3 T11: 0.5852 T22: 0.7527 REMARK 3 T33: 0.7250 T12: -0.0948 REMARK 3 T13: -0.0355 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 2.2772 L22: 0.9897 REMARK 3 L33: 1.3128 L12: 0.1865 REMARK 3 L13: 0.3513 L23: 0.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.5100 S13: -0.0146 REMARK 3 S21: -0.2716 S22: 0.1928 S23: 0.3475 REMARK 3 S31: 0.0286 S32: -0.1229 S33: -0.0637 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 462:512 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3897 9.3837 10.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.4554 T22: 0.6542 REMARK 3 T33: 0.4223 T12: -0.0503 REMARK 3 T13: 0.0749 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.6418 L22: 1.0687 REMARK 3 L33: 3.9002 L12: 0.5002 REMARK 3 L13: -0.0878 L23: 1.9252 REMARK 3 S TENSOR REMARK 3 S11: -0.1866 S12: 0.3653 S13: 0.1715 REMARK 3 S21: -0.2079 S22: 0.3906 S23: -0.3606 REMARK 3 S31: -0.4026 S32: -0.1251 S33: -0.1344 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESID 4:62 REMARK 3 ORIGIN FOR THE GROUP (A): 62.2873 7.9135 45.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.8160 T22: 0.7459 REMARK 3 T33: 0.8671 T12: 0.1562 REMARK 3 T13: -0.1863 T23: -0.1223 REMARK 3 L TENSOR REMARK 3 L11: 3.0713 L22: 1.3389 REMARK 3 L33: 2.6847 L12: -0.9253 REMARK 3 L13: -1.4878 L23: 0.8882 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: -0.8754 S13: 0.5374 REMARK 3 S21: 0.0154 S22: 0.3213 S23: -0.6200 REMARK 3 S31: 0.1948 S32: 0.1862 S33: -0.4452 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 63:197 REMARK 3 ORIGIN FOR THE GROUP (A): 57.8036 12.0169 29.0962 REMARK 3 T TENSOR REMARK 3 T11: 0.5657 T22: 0.5456 REMARK 3 T33: 0.5277 T12: 0.0865 REMARK 3 T13: -0.0322 T23: -0.1118 REMARK 3 L TENSOR REMARK 3 L11: 3.2275 L22: 2.6138 REMARK 3 L33: 1.7959 L12: 0.5023 REMARK 3 L13: 0.0321 L23: -0.7071 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.0163 S13: 0.1391 REMARK 3 S21: 0.2317 S22: 0.1329 S23: -0.2993 REMARK 3 S31: 0.0191 S32: 0.0333 S33: -0.1023 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 198:383 REMARK 3 ORIGIN FOR THE GROUP (A): 65.7601 14.1417 39.1039 REMARK 3 T TENSOR REMARK 3 T11: 0.6298 T22: 0.6405 REMARK 3 T33: 0.7584 T12: 0.1268 REMARK 3 T13: -0.0546 T23: -0.1345 REMARK 3 L TENSOR REMARK 3 L11: 2.8724 L22: 1.1587 REMARK 3 L33: 2.1056 L12: 1.0582 REMARK 3 L13: 0.4864 L23: -0.6057 REMARK 3 S TENSOR REMARK 3 S11: 0.1555 S12: -0.4194 S13: 0.1690 REMARK 3 S21: 0.5201 S22: -0.0129 S23: -0.2507 REMARK 3 S31: -0.0974 S32: 0.2685 S33: -0.0864 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 384:510 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2269 6.6426 41.4884 REMARK 3 T TENSOR REMARK 3 T11: 0.6915 T22: 0.7466 REMARK 3 T33: 0.5338 T12: 0.0619 REMARK 3 T13: 0.0176 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 1.9214 L22: 1.3407 REMARK 3 L33: 2.2356 L12: 0.0167 REMARK 3 L13: 0.4665 L23: 0.8021 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.5403 S13: -0.0154 REMARK 3 S21: 0.5410 S22: 0.1411 S23: -0.0129 REMARK 3 S31: 0.2133 S32: 0.0135 S33: -0.1970 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3F3A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL + 1UL DROP WITH 500 UL RESERVOIR REMARK 280 SOLUTION: 100 MM TRIS-MES PH 6.5, 75 MM K-CITRATE, 24-28% W/W REMARK 280 PEG550 MME AND 10% (V/V) GLYCEROL; PROTEIN BUFFER: 10 MM TRIS- REMARK 280 MES PH 6.0, 100 MM KCL, 10% (V/V) GLYCEROL, 40 MM N-OCTYL-BETA-D- REMARK 280 GLUCOSIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.04000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 132 REMARK 465 ASN A 133 REMARK 465 ALA A 513 REMARK 465 GLY A 514 REMARK 465 THR A 515 REMARK 465 LEU A 516 REMARK 465 VAL A 517 REMARK 465 PRO A 518 REMARK 465 ARG A 519 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 VAL B 3 REMARK 465 MET B 476 REMARK 465 GLU B 477 REMARK 465 GLU B 478 REMARK 465 THR B 479 REMARK 465 GLU B 511 REMARK 465 SER B 512 REMARK 465 ALA B 513 REMARK 465 GLY B 514 REMARK 465 THR B 515 REMARK 465 LEU B 516 REMARK 465 VAL B 517 REMARK 465 PRO B 518 REMARK 465 ARG B 519 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 ARG A 508 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 509 CG OD1 ND2 REMARK 470 GLU A 511 CG CD OE1 OE2 REMARK 470 ASN B 133 CG OD1 ND2 REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 ILE B 472 CG1 CG2 CD1 REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 ILE B 475 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 477 O4 BOG A 602 2.16 REMARK 500 OG SER B 113 O HOH B 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 54 -55.84 -132.75 REMARK 500 LYS A 163 79.48 -116.61 REMARK 500 ASP A 234 76.25 -108.40 REMARK 500 ASN A 397 -72.91 -58.77 REMARK 500 THR A 409 -75.40 -112.72 REMARK 500 TYR A 454 -49.29 -133.77 REMARK 500 ALA A 468 -71.87 -64.62 REMARK 500 GLU A 511 28.48 -79.57 REMARK 500 VAL B 54 -55.00 -120.54 REMARK 500 ASN B 133 -125.01 61.68 REMARK 500 THR B 135 32.93 39.94 REMARK 500 ILE B 297 -70.05 -110.62 REMARK 500 THR B 409 -72.14 -123.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BOG B 605 DBREF 5JAE A 1 513 UNP O67854 O67854_AQUAE 1 513 DBREF 5JAE B 1 513 UNP O67854 O67854_AQUAE 1 513 SEQADV 5JAE GLY A 514 UNP O67854 EXPRESSION TAG SEQADV 5JAE THR A 515 UNP O67854 EXPRESSION TAG SEQADV 5JAE LEU A 516 UNP O67854 EXPRESSION TAG SEQADV 5JAE VAL A 517 UNP O67854 EXPRESSION TAG SEQADV 5JAE PRO A 518 UNP O67854 EXPRESSION TAG SEQADV 5JAE ARG A 519 UNP O67854 EXPRESSION TAG SEQADV 5JAE GLY B 514 UNP O67854 EXPRESSION TAG SEQADV 5JAE THR B 515 UNP O67854 EXPRESSION TAG SEQADV 5JAE LEU B 516 UNP O67854 EXPRESSION TAG SEQADV 5JAE VAL B 517 UNP O67854 EXPRESSION TAG SEQADV 5JAE PRO B 518 UNP O67854 EXPRESSION TAG SEQADV 5JAE ARG B 519 UNP O67854 EXPRESSION TAG SEQRES 1 A 519 MET GLU VAL LYS ARG GLU HIS TRP ALA THR ARG LEU GLY SEQRES 2 A 519 LEU ILE LEU ALA MET ALA GLY ASN ALA VAL GLY LEU GLY SEQRES 3 A 519 ASN PHE LEU ARG PHE PRO VAL GLN ALA ALA GLU ASN GLY SEQRES 4 A 519 GLY GLY ALA PHE MET ILE PRO TYR ILE ILE ALA PHE LEU SEQRES 5 A 519 LEU VAL GLY ILE PRO LEU MET TRP ILE GLU TRP ALA MET SEQRES 6 A 519 GLY ARG TYR GLY GLY ALA GLN GLY HIS GLY THR THR PRO SEQRES 7 A 519 ALA ILE PHE TYR LEU LEU TRP ARG ASN ARG PHE ALA LYS SEQRES 8 A 519 ILE LEU GLY VAL PHE GLY LEU TRP ILE PRO LEU VAL VAL SEQRES 9 A 519 ALA ILE TYR TYR VAL TYR ILE GLU SER TRP THR LEU GLY SEQRES 10 A 519 PHE ALA ILE LYS PHE LEU VAL GLY LEU VAL PRO GLU PRO SEQRES 11 A 519 PRO PRO ASN ALA THR ASP PRO ASP SER ILE LEU ARG PRO SEQRES 12 A 519 PHE LYS GLU PHE LEU TYR SER TYR ILE GLY VAL PRO LYS SEQRES 13 A 519 GLY ASP GLU PRO ILE LEU LYS PRO SER LEU PHE ALA TYR SEQRES 14 A 519 ILE VAL PHE LEU ILE THR MET PHE ILE ASN VAL SER ILE SEQRES 15 A 519 LEU ILE ARG GLY ILE SER LYS GLY ILE GLU ARG PHE ALA SEQRES 16 A 519 LYS ILE ALA MET PRO THR LEU PHE ILE LEU ALA VAL PHE SEQRES 17 A 519 LEU VAL ILE ARG VAL PHE LEU LEU GLU THR PRO ASN GLY SEQRES 18 A 519 THR ALA ALA ASP GLY LEU ASN PHE LEU TRP THR PRO ASP SEQRES 19 A 519 PHE GLU LYS LEU LYS ASP PRO GLY VAL TRP ILE ALA ALA SEQRES 20 A 519 VAL GLY GLN ILE PHE PHE THR LEU SER LEU GLY PHE GLY SEQRES 21 A 519 ALA ILE ILE THR TYR ALA SER TYR VAL ARG LYS ASP GLN SEQRES 22 A 519 ASP ILE VAL LEU SER GLY LEU THR ALA ALA THR LEU ASN SEQRES 23 A 519 GLU LYS ALA GLU VAL ILE LEU GLY GLY SER ILE SER ILE SEQRES 24 A 519 PRO ALA ALA VAL ALA PHE PHE GLY VAL ALA ASN ALA VAL SEQRES 25 A 519 ALA ILE ALA LYS ALA GLY ALA PHE ASN LEU GLY PHE ILE SEQRES 26 A 519 THR LEU PRO ALA ILE PHE SER GLN THR ALA GLY GLY THR SEQRES 27 A 519 PHE LEU GLY PHE LEU TRP PHE PHE LEU LEU PHE PHE ALA SEQRES 28 A 519 GLY LEU THR SER SER ILE ALA ILE MET GLN PRO MET ILE SEQRES 29 A 519 ALA PHE LEU GLU ASP GLU LEU LYS LEU SER ARG LYS HIS SEQRES 30 A 519 ALA VAL LEU TRP THR ALA ALA ILE VAL PHE PHE SER ALA SEQRES 31 A 519 HIS LEU VAL MET PHE LEU ASN LYS SER LEU ASP GLU MET SEQRES 32 A 519 ASP PHE TRP ALA GLY THR ILE GLY VAL VAL PHE PHE GLY SEQRES 33 A 519 LEU THR GLU LEU ILE ILE PHE PHE TRP ILE PHE GLY ALA SEQRES 34 A 519 ASP LYS ALA TRP GLU GLU ILE ASN ARG GLY GLY ILE ILE SEQRES 35 A 519 LYS VAL PRO ARG ILE TYR TYR TYR VAL MET ARG TYR ILE SEQRES 36 A 519 THR PRO ALA PHE LEU ALA VAL LEU LEU VAL VAL TRP ALA SEQRES 37 A 519 ARG GLU TYR ILE PRO LYS ILE MET GLU GLU THR HIS TRP SEQRES 38 A 519 THR VAL TRP ILE THR ARG PHE TYR ILE ILE GLY LEU PHE SEQRES 39 A 519 LEU PHE LEU THR PHE LEU VAL PHE LEU ALA GLU ARG ARG SEQRES 40 A 519 ARG ASN HIS GLU SER ALA GLY THR LEU VAL PRO ARG SEQRES 1 B 519 MET GLU VAL LYS ARG GLU HIS TRP ALA THR ARG LEU GLY SEQRES 2 B 519 LEU ILE LEU ALA MET ALA GLY ASN ALA VAL GLY LEU GLY SEQRES 3 B 519 ASN PHE LEU ARG PHE PRO VAL GLN ALA ALA GLU ASN GLY SEQRES 4 B 519 GLY GLY ALA PHE MET ILE PRO TYR ILE ILE ALA PHE LEU SEQRES 5 B 519 LEU VAL GLY ILE PRO LEU MET TRP ILE GLU TRP ALA MET SEQRES 6 B 519 GLY ARG TYR GLY GLY ALA GLN GLY HIS GLY THR THR PRO SEQRES 7 B 519 ALA ILE PHE TYR LEU LEU TRP ARG ASN ARG PHE ALA LYS SEQRES 8 B 519 ILE LEU GLY VAL PHE GLY LEU TRP ILE PRO LEU VAL VAL SEQRES 9 B 519 ALA ILE TYR TYR VAL TYR ILE GLU SER TRP THR LEU GLY SEQRES 10 B 519 PHE ALA ILE LYS PHE LEU VAL GLY LEU VAL PRO GLU PRO SEQRES 11 B 519 PRO PRO ASN ALA THR ASP PRO ASP SER ILE LEU ARG PRO SEQRES 12 B 519 PHE LYS GLU PHE LEU TYR SER TYR ILE GLY VAL PRO LYS SEQRES 13 B 519 GLY ASP GLU PRO ILE LEU LYS PRO SER LEU PHE ALA TYR SEQRES 14 B 519 ILE VAL PHE LEU ILE THR MET PHE ILE ASN VAL SER ILE SEQRES 15 B 519 LEU ILE ARG GLY ILE SER LYS GLY ILE GLU ARG PHE ALA SEQRES 16 B 519 LYS ILE ALA MET PRO THR LEU PHE ILE LEU ALA VAL PHE SEQRES 17 B 519 LEU VAL ILE ARG VAL PHE LEU LEU GLU THR PRO ASN GLY SEQRES 18 B 519 THR ALA ALA ASP GLY LEU ASN PHE LEU TRP THR PRO ASP SEQRES 19 B 519 PHE GLU LYS LEU LYS ASP PRO GLY VAL TRP ILE ALA ALA SEQRES 20 B 519 VAL GLY GLN ILE PHE PHE THR LEU SER LEU GLY PHE GLY SEQRES 21 B 519 ALA ILE ILE THR TYR ALA SER TYR VAL ARG LYS ASP GLN SEQRES 22 B 519 ASP ILE VAL LEU SER GLY LEU THR ALA ALA THR LEU ASN SEQRES 23 B 519 GLU LYS ALA GLU VAL ILE LEU GLY GLY SER ILE SER ILE SEQRES 24 B 519 PRO ALA ALA VAL ALA PHE PHE GLY VAL ALA ASN ALA VAL SEQRES 25 B 519 ALA ILE ALA LYS ALA GLY ALA PHE ASN LEU GLY PHE ILE SEQRES 26 B 519 THR LEU PRO ALA ILE PHE SER GLN THR ALA GLY GLY THR SEQRES 27 B 519 PHE LEU GLY PHE LEU TRP PHE PHE LEU LEU PHE PHE ALA SEQRES 28 B 519 GLY LEU THR SER SER ILE ALA ILE MET GLN PRO MET ILE SEQRES 29 B 519 ALA PHE LEU GLU ASP GLU LEU LYS LEU SER ARG LYS HIS SEQRES 30 B 519 ALA VAL LEU TRP THR ALA ALA ILE VAL PHE PHE SER ALA SEQRES 31 B 519 HIS LEU VAL MET PHE LEU ASN LYS SER LEU ASP GLU MET SEQRES 32 B 519 ASP PHE TRP ALA GLY THR ILE GLY VAL VAL PHE PHE GLY SEQRES 33 B 519 LEU THR GLU LEU ILE ILE PHE PHE TRP ILE PHE GLY ALA SEQRES 34 B 519 ASP LYS ALA TRP GLU GLU ILE ASN ARG GLY GLY ILE ILE SEQRES 35 B 519 LYS VAL PRO ARG ILE TYR TYR TYR VAL MET ARG TYR ILE SEQRES 36 B 519 THR PRO ALA PHE LEU ALA VAL LEU LEU VAL VAL TRP ALA SEQRES 37 B 519 ARG GLU TYR ILE PRO LYS ILE MET GLU GLU THR HIS TRP SEQRES 38 B 519 THR VAL TRP ILE THR ARG PHE TYR ILE ILE GLY LEU PHE SEQRES 39 B 519 LEU PHE LEU THR PHE LEU VAL PHE LEU ALA GLU ARG ARG SEQRES 40 B 519 ARG ASN HIS GLU SER ALA GLY THR LEU VAL PRO ARG HET BOG A 601 20 HET BOG A 602 20 HET BOG A 603 20 HET BOG A 604 20 HET BOG B 601 20 HET BOG B 602 20 HET BOG B 603 20 HET BOG B 604 20 HET BOG B 605 9 HET BOG B 606 20 HET BOG B 607 20 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 BOG 11(C14 H28 O6) FORMUL 14 HOH *44(H2 O) HELIX 1 AA1 THR A 10 LEU A 25 1 16 HELIX 2 AA2 LEU A 29 GLY A 39 1 11 HELIX 3 AA3 GLY A 39 VAL A 54 1 16 HELIX 4 AA4 VAL A 54 GLN A 72 1 19 HELIX 5 AA5 THR A 76 TRP A 85 1 10 HELIX 6 AA6 ASN A 87 GLY A 125 1 39 HELIX 7 AA7 ASP A 136 GLY A 153 1 18 HELIX 8 AA8 SER A 165 GLY A 186 1 22 HELIX 9 AA9 GLY A 190 LEU A 215 1 26 HELIX 10 AB1 ALA A 223 PHE A 229 1 7 HELIX 11 AB2 GLU A 236 LYS A 239 5 4 HELIX 12 AB3 ASP A 240 SER A 256 1 17 HELIX 13 AB4 GLY A 260 TYR A 268 1 9 HELIX 14 AB5 ILE A 275 ILE A 292 1 18 HELIX 15 AB6 LEU A 293 SER A 296 5 4 HELIX 16 AB7 ILE A 297 LYS A 316 1 20 HELIX 17 AB8 GLY A 318 ILE A 325 1 8 HELIX 18 AB9 ILE A 325 SER A 332 1 8 HELIX 19 AC1 GLY A 336 GLU A 370 1 35 HELIX 20 AC2 SER A 374 LEU A 396 1 23 HELIX 21 AC3 LYS A 398 ALA A 407 1 10 HELIX 22 AC4 THR A 409 TRP A 425 1 17 HELIX 23 AC5 GLY A 428 ARG A 438 1 11 HELIX 24 AC6 ARG A 446 TYR A 454 1 9 HELIX 25 AC7 TYR A 454 ILE A 472 1 19 HELIX 26 AC8 THR A 482 GLU A 511 1 30 HELIX 27 AC9 THR B 10 GLY B 24 1 15 HELIX 28 AD1 LEU B 29 GLU B 37 1 9 HELIX 29 AD2 GLY B 39 ALA B 42 5 4 HELIX 30 AD3 PHE B 43 VAL B 54 1 12 HELIX 31 AD4 VAL B 54 GLN B 72 1 19 HELIX 32 AD5 THR B 76 TRP B 85 1 10 HELIX 33 AD6 ASN B 87 GLY B 125 1 39 HELIX 34 AD7 ASP B 136 GLY B 153 1 18 HELIX 35 AD8 SER B 165 GLY B 190 1 26 HELIX 36 AD9 GLY B 190 LEU B 216 1 27 HELIX 37 AE1 ALA B 223 THR B 232 1 10 HELIX 38 AE2 ASP B 234 LYS B 239 1 6 HELIX 39 AE3 ASP B 240 LEU B 255 1 16 HELIX 40 AE4 GLY B 260 TYR B 268 1 9 HELIX 41 AE5 ILE B 275 ILE B 292 1 18 HELIX 42 AE6 ILE B 297 LYS B 316 1 20 HELIX 43 AE7 GLY B 318 PHE B 324 1 7 HELIX 44 AE8 ILE B 325 GLN B 333 1 9 HELIX 45 AE9 GLY B 336 GLU B 370 1 35 HELIX 46 AF1 SER B 374 LEU B 396 1 23 HELIX 47 AF2 LYS B 398 ALA B 407 1 10 HELIX 48 AF3 THR B 409 PHE B 424 1 16 HELIX 49 AF4 GLY B 428 ARG B 438 1 11 HELIX 50 AF5 ARG B 446 TYR B 454 1 9 HELIX 51 AF6 TYR B 454 TYR B 471 1 18 HELIX 52 AF7 TRP B 481 HIS B 510 1 30 SHEET 1 AA1 2 GLU A 217 THR A 218 0 SHEET 2 AA1 2 GLY A 221 THR A 222 -1 O GLY A 221 N THR A 218 SHEET 1 AA2 2 GLU B 217 THR B 218 0 SHEET 2 AA2 2 GLY B 221 THR B 222 -1 O GLY B 221 N THR B 218 LINK NH2 ARG B 30 O4 BOG B 604 1555 1555 1.30 CISPEP 1 ALA A 134 THR A 135 0 -1.33 CRYST1 81.570 92.080 92.470 90.00 95.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012259 0.000000 0.001111 0.00000 SCALE2 0.000000 0.010860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010859 0.00000