HEADER HYDROLASE INHIBITOR 13-APR-16 5JB4 TITLE A SIMPLIFIED BPTI VARIANT CONTAINING 21 ALANINES OUT 58 OF RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANCREATIC TRYPSIN INHIBITOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: APROTININ,BASIC PROTEASE INHIBITOR,BPTI; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BOVINE PANCREATIC TRYPSIN INHIBITOR VARIANT, SEQUENCE SIMPLIFICATION, KEYWDS 2 21 ALANINES, PROTEIN DESIGN, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR M.M.ISLAM REVDAT 3 08-NOV-23 5JB4 1 REMARK REVDAT 2 19-FEB-20 5JB4 1 REMARK REVDAT 1 19-APR-17 5JB4 0 JRNL AUTH M.M.ISLAM,M.YOHDA,S.KIDOKORO,Y.KURODA JRNL TITL CRYSTAL STRUCTURES OF HIGHLY SIMPLIFIED BPTIS PROVIDE JRNL TITL 2 INSIGHTS INTO HYDRATION-DRIVEN INCREASE OF UNFOLDING JRNL TITL 3 ENTHALPY JRNL REF SCI REP V. 7 41205 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28266637 JRNL DOI 10.1038/SREP41205 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 12300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1269 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1154 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1736 ; 1.719 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2612 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 6.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;17.512 ;21.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 128 ;13.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.685 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 180 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1538 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 327 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 693 ; 1.068 ; 1.389 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 692 ; 1.058 ; 1.387 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 861 ; 1.668 ; 2.062 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 862 ; 1.670 ; 2.064 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 576 ; 1.298 ; 1.515 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 564 ; 1.208 ; 1.477 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 857 ; 1.865 ; 2.189 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1679 ; 4.851 ;12.841 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1497 ; 4.042 ;11.938 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 3.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DENZO REMARK 200 STARTING MODEL: 3AUB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, LITHIUM SULFATE, TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.92750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.92750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.52100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.66750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.52100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.66750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.92750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.52100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.66750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.92750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.52100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.66750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1243 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1249 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1277 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1039 CD NE CZ NH1 NH2 REMARK 470 ARG B1039 CD NE CZ NH1 NH2 REMARK 470 GLU C1007 CD OE1 OE2 REMARK 470 ARG C1039 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1001 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A1001 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B1056 61.96 -105.33 REMARK 500 ASN C1044 108.71 -161.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1292 DISTANCE = 6.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JB5 RELATED DB: PDB REMARK 900 RELATED ID: 5JB6 RELATED DB: PDB REMARK 900 RELATED ID: 5JB7 RELATED DB: PDB DBREF 5JB4 A 1001 1058 UNP P00974 BPT1_BOVIN 36 93 DBREF 5JB4 B 1001 1058 UNP P00974 BPT1_BOVIN 36 93 DBREF 5JB4 C 1001 1058 UNP P00974 BPT1_BOVIN 36 93 SEQADV 5JB4 ALA A 1003 UNP P00974 ASP 38 VARIANT SEQADV 5JB4 ALA A 1011 UNP P00974 THR 46 VARIANT SEQADV 5JB4 GLY A 1014 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5JB4 ALA A 1015 UNP P00974 LYS 50 VARIANT SEQADV 5JB4 ALA A 1017 UNP P00974 ARG 52 VARIANT SEQADV 5JB4 ALA A 1026 UNP P00974 LYS 61 VARIANT SEQADV 5JB4 ALA A 1029 UNP P00974 LEU 64 VARIANT SEQADV 5JB4 ALA A 1030 UNP P00974 CYS 65 VARIANT SEQADV 5JB4 ALA A 1032 UNP P00974 THR 67 VARIANT SEQADV 5JB4 VAL A 1038 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5JB4 ALA A 1046 UNP P00974 LYS 81 VARIANT SEQADV 5JB4 ALA A 1049 UNP P00974 GLU 84 VARIANT SEQADV 5JB4 ALA A 1051 UNP P00974 CYS 86 VARIANT SEQADV 5JB4 LEU A 1052 UNP P00974 MET 87 ENGINEERED MUTATION SEQADV 5JB4 ALA A 1053 UNP P00974 ARG 88 VARIANT SEQADV 5JB4 ALA A 1054 UNP P00974 THR 89 VARIANT SEQADV 5JB4 ALA A 1056 UNP P00974 GLY 91 VARIANT SEQADV 5JB4 ALA A 1057 UNP P00974 GLY 92 VARIANT SEQADV 5JB4 ALA B 1003 UNP P00974 ASP 38 VARIANT SEQADV 5JB4 ALA B 1011 UNP P00974 THR 46 VARIANT SEQADV 5JB4 GLY B 1014 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5JB4 ALA B 1015 UNP P00974 LYS 50 VARIANT SEQADV 5JB4 ALA B 1017 UNP P00974 ARG 52 VARIANT SEQADV 5JB4 ALA B 1026 UNP P00974 LYS 61 VARIANT SEQADV 5JB4 ALA B 1029 UNP P00974 LEU 64 VARIANT SEQADV 5JB4 ALA B 1030 UNP P00974 CYS 65 VARIANT SEQADV 5JB4 ALA B 1032 UNP P00974 THR 67 VARIANT SEQADV 5JB4 VAL B 1038 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5JB4 ALA B 1046 UNP P00974 LYS 81 VARIANT SEQADV 5JB4 ALA B 1049 UNP P00974 GLU 84 VARIANT SEQADV 5JB4 ALA B 1051 UNP P00974 CYS 86 VARIANT SEQADV 5JB4 LEU B 1052 UNP P00974 MET 87 ENGINEERED MUTATION SEQADV 5JB4 ALA B 1053 UNP P00974 ARG 88 VARIANT SEQADV 5JB4 ALA B 1054 UNP P00974 THR 89 VARIANT SEQADV 5JB4 ALA B 1056 UNP P00974 GLY 91 VARIANT SEQADV 5JB4 ALA B 1057 UNP P00974 GLY 92 VARIANT SEQADV 5JB4 ALA C 1003 UNP P00974 ASP 38 VARIANT SEQADV 5JB4 ALA C 1011 UNP P00974 THR 46 VARIANT SEQADV 5JB4 GLY C 1014 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5JB4 ALA C 1015 UNP P00974 LYS 50 VARIANT SEQADV 5JB4 ALA C 1017 UNP P00974 ARG 52 VARIANT SEQADV 5JB4 ALA C 1026 UNP P00974 LYS 61 VARIANT SEQADV 5JB4 ALA C 1029 UNP P00974 LEU 64 VARIANT SEQADV 5JB4 ALA C 1030 UNP P00974 CYS 65 VARIANT SEQADV 5JB4 ALA C 1032 UNP P00974 THR 67 VARIANT SEQADV 5JB4 VAL C 1038 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5JB4 ALA C 1046 UNP P00974 LYS 81 VARIANT SEQADV 5JB4 ALA C 1049 UNP P00974 GLU 84 VARIANT SEQADV 5JB4 ALA C 1051 UNP P00974 CYS 86 VARIANT SEQADV 5JB4 LEU C 1052 UNP P00974 MET 87 ENGINEERED MUTATION SEQADV 5JB4 ALA C 1053 UNP P00974 ARG 88 VARIANT SEQADV 5JB4 ALA C 1054 UNP P00974 THR 89 VARIANT SEQADV 5JB4 ALA C 1056 UNP P00974 GLY 91 VARIANT SEQADV 5JB4 ALA C 1057 UNP P00974 GLY 92 VARIANT SEQRES 1 A 58 ARG PRO ALA PHE CYS LEU GLU PRO PRO TYR ALA GLY PRO SEQRES 2 A 58 GLY ALA ALA ALA ILE ILE ARG TYR PHE TYR ASN ALA ALA SEQRES 3 A 58 ALA GLY ALA ALA GLN ALA PHE VAL TYR GLY GLY VAL ARG SEQRES 4 A 58 ALA LYS ARG ASN ASN PHE ALA SER ALA ALA ASP ALA LEU SEQRES 5 A 58 ALA ALA CYS ALA ALA ALA SEQRES 1 B 58 ARG PRO ALA PHE CYS LEU GLU PRO PRO TYR ALA GLY PRO SEQRES 2 B 58 GLY ALA ALA ALA ILE ILE ARG TYR PHE TYR ASN ALA ALA SEQRES 3 B 58 ALA GLY ALA ALA GLN ALA PHE VAL TYR GLY GLY VAL ARG SEQRES 4 B 58 ALA LYS ARG ASN ASN PHE ALA SER ALA ALA ASP ALA LEU SEQRES 5 B 58 ALA ALA CYS ALA ALA ALA SEQRES 1 C 58 ARG PRO ALA PHE CYS LEU GLU PRO PRO TYR ALA GLY PRO SEQRES 2 C 58 GLY ALA ALA ALA ILE ILE ARG TYR PHE TYR ASN ALA ALA SEQRES 3 C 58 ALA GLY ALA ALA GLN ALA PHE VAL TYR GLY GLY VAL ARG SEQRES 4 C 58 ALA LYS ARG ASN ASN PHE ALA SER ALA ALA ASP ALA LEU SEQRES 5 C 58 ALA ALA CYS ALA ALA ALA HET SO4 A1101 5 HET SO4 B1101 5 HET SO4 C1101 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *271(H2 O) HELIX 1 AA1 PRO A 1002 GLU A 1007 5 6 HELIX 2 AA2 SER A 1047 ALA A 1056 1 10 HELIX 3 AA3 PRO B 1002 GLU B 1007 5 6 HELIX 4 AA4 SER B 1047 ALA B 1056 1 10 HELIX 5 AA5 PRO C 1002 GLU C 1007 5 6 HELIX 6 AA6 SER C 1047 ALA C 1056 1 10 SHEET 1 AA1 2 ILE A1018 ASN A1024 0 SHEET 2 AA1 2 ALA A1029 TYR A1035 -1 O TYR A1035 N ILE A1018 SHEET 1 AA2 2 ILE B1018 ASN B1024 0 SHEET 2 AA2 2 ALA B1029 TYR B1035 -1 O TYR B1035 N ILE B1018 SHEET 1 AA3 2 ILE C1018 ASN C1024 0 SHEET 2 AA3 2 ALA C1029 TYR C1035 -1 O TYR C1035 N ILE C1018 SSBOND 1 CYS A 1005 CYS A 1055 1555 1555 2.02 SSBOND 2 CYS B 1005 CYS B 1055 1555 1555 2.02 SSBOND 3 CYS C 1005 CYS C 1055 1555 1555 2.05 SITE 1 AC1 7 ARG A1020 TYR A1035 GLY A1037 HOH A1210 SITE 2 AC1 7 HOH A1229 HOH A1242 ARG B1020 SITE 1 AC2 7 GLU B1007 LYS B1041 ARG B1042 HOH B1205 SITE 2 AC2 7 HOH B1207 HOH B1210 HOH B1213 SITE 1 AC3 4 ARG C1020 ALA C1046 HOH C1216 HOH C1225 CRYST1 61.042 99.335 61.855 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016167 0.00000