HEADER TRANSPORT PROTEIN 13-APR-16 5JBS TITLE CONFORMATIONAL CHANGES DURING MONOMER-TO-DIMER TRANSITION OF BRUCELLA TITLE 2 SUIS VIRB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV SECRETION SYSTEM PROTEIN VIRB8; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA SUIS BIOVAR 1 (STRAIN 1330); SOURCE 3 ORGANISM_TAXID: 204722; SOURCE 4 STRAIN: 1330; SOURCE 5 GENE: VIRB8, BRA0062, BS1330_II0062; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS M012R-VIRB8, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ARYA,M.SHARIFAHMADIAN,J.SYGUSCH,B.BARON REVDAT 4 06-MAR-24 5JBS 1 REMARK REVDAT 3 08-JAN-20 5JBS 1 REMARK REVDAT 2 20-SEP-17 5JBS 1 REMARK REVDAT 1 01-MAR-17 5JBS 0 JRNL AUTH T.ARYA,M.SHARIFAHMADIAN,J.SYGUSCH,B.BARON JRNL TITL NMR ANALYSES, X-RAY CRYSTALLOGRAPHY AND SMALL-MOLECULE JRNL TITL 2 PROBING REVEAL CONFORMATIONAL SHIFTS DURING MONOMER-TO-DIMER JRNL TITL 3 TRANSITION OF BRUCELLA SUIS VIRB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 46338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2497 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -3.63000 REMARK 3 B33 (A**2) : 3.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4343 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3970 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5882 ; 1.900 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9138 ; 1.069 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 7.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;31.030 ;23.604 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;15.789 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.057 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 649 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4816 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1016 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 3.941 ; 4.382 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2083 ; 3.935 ; 4.381 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2591 ; 5.412 ; 6.522 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2592 ; 5.411 ; 6.524 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2259 ; 4.727 ; 5.010 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2259 ; 4.717 ; 5.010 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3292 ; 7.031 ; 7.299 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5248 ; 9.535 ;36.965 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5178 ; 9.527 ;36.780 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS/HCL PH 6.8, 18% PEG-MME REMARK 280 2000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.36150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 188 REMARK 465 GLU A 189 REMARK 465 THR A 190 REMARK 465 GLN B 146 REMARK 465 GLY B 147 REMARK 465 ASP B 148 REMARK 465 LYS B 149 REMARK 465 ALA B 150 REMARK 465 LEU B 151 REMARK 465 ASP B 152 REMARK 465 LYS B 153 REMARK 465 GLN B 154 REMARK 465 TYR B 155 REMARK 465 GLY B 156 REMARK 465 SER B 157 REMARK 465 MET B 235 REMARK 465 GLY B 236 REMARK 465 VAL B 237 REMARK 465 VAL B 238 REMARK 465 GLY C 147 REMARK 465 ASP C 148 REMARK 465 LYS C 149 REMARK 465 ALA C 150 REMARK 465 LEU C 151 REMARK 465 ASP C 152 REMARK 465 LYS C 153 REMARK 465 GLN C 154 REMARK 465 TYR C 155 REMARK 465 GLY C 156 REMARK 465 SER C 157 REMARK 465 ASN C 158 REMARK 465 ARG C 186 REMARK 465 THR C 187 REMARK 465 ASN C 188 REMARK 465 GLU C 189 REMARK 465 THR C 190 REMARK 465 MET C 235 REMARK 465 GLY C 236 REMARK 465 VAL C 237 REMARK 465 VAL C 238 REMARK 465 GLY D 147 REMARK 465 ASP D 148 REMARK 465 LYS D 149 REMARK 465 ALA D 150 REMARK 465 VAL D 237 REMARK 465 VAL D 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN D 146 O HOH D 401 2.12 REMARK 500 N SER C 97 O HOH C 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 103 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 103 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP C 103 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 103 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 150 119.58 -34.72 REMARK 500 ASN B 188 44.86 96.12 REMARK 500 MET D 235 -122.64 -128.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN D 188 GLU D 189 -147.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 485 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 486 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH D 484 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 301 DBREF 5JBS A 97 238 UNP Q7CEG3 VIRB8_BRUSU 97 238 DBREF 5JBS B 97 238 UNP Q7CEG3 VIRB8_BRUSU 97 238 DBREF 5JBS C 97 238 UNP Q7CEG3 VIRB8_BRUSU 97 238 DBREF 5JBS D 97 238 UNP Q7CEG3 VIRB8_BRUSU 97 238 SEQADV 5JBS ARG A 102 UNP Q7CEG3 MET 102 ENGINEERED MUTATION SEQADV 5JBS ARG B 102 UNP Q7CEG3 MET 102 ENGINEERED MUTATION SEQADV 5JBS ARG C 102 UNP Q7CEG3 MET 102 ENGINEERED MUTATION SEQADV 5JBS ARG D 102 UNP Q7CEG3 MET 102 ENGINEERED MUTATION SEQRES 1 A 142 SER TYR ASP THR VAL ARG ASP LYS TYR TRP LEU SER GLN SEQRES 2 A 142 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 A 142 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 A 142 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 A 142 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 A 142 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 A 142 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 A 142 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 A 142 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 A 142 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 A 142 THR SER TYR ARG VAL ASP PRO GLU MET GLY VAL VAL SEQRES 1 B 142 SER TYR ASP THR VAL ARG ASP LYS TYR TRP LEU SER GLN SEQRES 2 B 142 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 B 142 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 B 142 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 B 142 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 B 142 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 B 142 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 B 142 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 B 142 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 B 142 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 B 142 THR SER TYR ARG VAL ASP PRO GLU MET GLY VAL VAL SEQRES 1 C 142 SER TYR ASP THR VAL ARG ASP LYS TYR TRP LEU SER GLN SEQRES 2 C 142 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 C 142 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 C 142 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 C 142 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 C 142 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 C 142 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 C 142 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 C 142 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 C 142 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 C 142 THR SER TYR ARG VAL ASP PRO GLU MET GLY VAL VAL SEQRES 1 D 142 SER TYR ASP THR VAL ARG ASP LYS TYR TRP LEU SER GLN SEQRES 2 D 142 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 D 142 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 D 142 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 D 142 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 D 142 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 D 142 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 D 142 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 D 142 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 D 142 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 D 142 THR SER TYR ARG VAL ASP PRO GLU MET GLY VAL VAL HET CL A 301 1 HET GOL A 302 6 HET PEG A 303 14 HET EPE B 301 15 HET CL B 302 1 HET PEG B 303 7 HET EPE C 301 15 HET PEG C 302 7 HET PEG C 303 7 HET EPE C 304 15 HET PEG D 301 7 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 5 CL 2(CL 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 PEG 5(C4 H10 O3) FORMUL 8 EPE 3(C8 H18 N2 O4 S) FORMUL 16 HOH *321(H2 O) HELIX 1 AA1 SER A 97 THR A 116 1 20 HELIX 2 AA2 THR A 121 SER A 133 1 13 HELIX 3 AA3 SER A 134 SER A 143 1 10 HELIX 4 AA4 GLN A 144 GLN A 146 5 3 HELIX 5 AA5 ALA A 150 GLY A 156 1 7 HELIX 6 AA6 ASN A 208 MET A 212 5 5 HELIX 7 AA7 SER A 213 ASN A 220 1 8 HELIX 8 AA8 TYR B 98 THR B 116 1 19 HELIX 9 AA9 THR B 121 LEU B 132 1 12 HELIX 10 AB1 SER B 134 GLN B 144 1 11 HELIX 11 AB2 ASN B 208 MET B 212 5 5 HELIX 12 AB3 SER B 213 ASN B 220 1 8 HELIX 13 AB4 TYR C 98 THR C 116 1 19 HELIX 14 AB5 THR C 121 LEU C 132 1 12 HELIX 15 AB6 SER C 134 PHE C 145 1 12 HELIX 16 AB7 ASN C 208 MET C 212 5 5 HELIX 17 AB8 SER C 213 ASN C 220 1 8 HELIX 18 AB9 TYR D 98 THR D 116 1 19 HELIX 19 AC1 THR D 121 SER D 133 1 13 HELIX 20 AC2 SER D 134 SER D 143 1 10 HELIX 21 AC3 GLN D 144 GLN D 146 5 3 HELIX 22 AC4 ASP D 152 GLY D 156 1 5 HELIX 23 AC5 ASN D 208 MET D 212 5 5 HELIX 24 AC6 SER D 213 ASN D 220 1 8 SHEET 1 AA1 4 VAL A 159 PRO A 170 0 SHEET 2 AA1 4 ILE A 175 ARG A 186 -1 O ALA A 181 N THR A 164 SHEET 3 AA1 4 GLU A 194 TYR A 206 -1 O ALA A 200 N VAL A 178 SHEET 4 AA1 4 PHE A 224 PRO A 233 -1 O SER A 228 N GLY A 203 SHEET 1 AA2 4 VAL B 159 PRO B 170 0 SHEET 2 AA2 4 ILE B 175 ARG B 186 -1 O THR B 183 N SER B 162 SHEET 3 AA2 4 GLU B 194 TYR B 206 -1 O ALA B 200 N VAL B 178 SHEET 4 AA2 4 PHE B 224 PRO B 233 -1 O ARG B 230 N THR B 201 SHEET 1 AA3 4 ARG C 160 PRO C 170 0 SHEET 2 AA3 4 ILE C 175 LYS C 185 -1 O ARG C 179 N SER C 167 SHEET 3 AA3 4 GLU C 194 TYR C 206 -1 O ILE C 202 N GLY C 176 SHEET 4 AA3 4 PHE C 224 PRO C 233 -1 O ARG C 230 N THR C 201 SHEET 1 AA4 4 VAL D 159 PRO D 170 0 SHEET 2 AA4 4 ILE D 175 ARG D 186 -1 O ARG D 179 N VAL D 166 SHEET 3 AA4 4 GLU D 194 TYR D 206 -1 O ILE D 202 N GLY D 176 SHEET 4 AA4 4 PHE D 224 PRO D 233 -1 O ASP D 232 N ILE D 199 SITE 1 AC1 5 TRP A 106 ASN A 220 PRO A 221 LEU A 222 SITE 2 AC1 5 PEG A 303 SITE 1 AC2 4 ARG A 230 ASP A 232 PRO A 233 HOH A 403 SITE 1 AC3 13 TYR A 105 TRP A 106 LEU A 218 THR A 219 SITE 2 AC3 13 PRO A 221 CL A 301 HOH A 402 HOH A 423 SITE 3 AC3 13 HOH A 424 TYR B 105 TRP B 106 THR B 219 SITE 4 AC3 13 PRO B 221 SITE 1 AC4 9 ILE B 112 THR B 116 ASP B 118 THR B 121 SITE 2 AC4 9 ASP B 125 VAL B 163 HOH B 401 HOH B 405 SITE 3 AC4 9 HOH B 414 SITE 1 AC5 4 TRP B 106 ASN B 220 PRO B 221 LEU B 222 SITE 1 AC6 8 SER B 134 SER B 136 GLU B 137 THR B 227 SITE 2 AC6 8 HOH B 450 ASN C 171 LYS C 173 ILE C 175 SITE 1 AC7 8 GLN C 139 ALA C 142 PEG C 302 HOH C 456 SITE 2 AC7 8 GLU D 115 LYS D 182 TRP D 198 VAL D 231 SITE 1 AC8 8 TYR C 126 GLU C 127 GLY C 130 MET C 131 SITE 2 AC8 8 EPE C 301 HOH C 413 PRO D 233 HOH D 405 SITE 1 AC9 10 ASP C 99 ARG C 102 ASP C 103 GLY C 172 SITE 2 AC9 10 GLY C 174 TYR C 204 GLN C 205 HOH C 409 SITE 3 AC9 10 HOH C 428 HOH C 436 SITE 1 AD1 9 ILE C 112 ALA C 113 THR C 116 THR C 121 SITE 2 AD1 9 ASP C 125 ARG C 160 VAL C 163 HOH C 408 SITE 3 AD1 9 HOH C 425 SITE 1 AD2 6 TYR D 105 TRP D 106 THR D 219 PRO D 221 SITE 2 AD2 6 HOH D 411 HOH D 437 CRYST1 67.503 78.723 70.840 90.00 111.56 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014814 0.000000 0.005853 0.00000 SCALE2 0.000000 0.012703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015178 0.00000