data_5JDS # _entry.id 5JDS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JDS WWPDB D_1000220303 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JDS _pdbx_database_status.recvd_initial_deposition_date 2016-04-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhou, A.' 1 ? 'Wei, H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Discov' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2056-5968 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first 17004 _citation.page_last 17004 _citation.title 'Structural basis of a novel PD-L1 nanobody for immune checkpoint blockade.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/celldisc.2017.4 _citation.pdbx_database_id_PubMed 28280600 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, F.' 1 primary 'Wei, H.' 2 primary 'Wang, X.' 3 primary 'Bai, Y.' 4 primary 'Wang, P.' 5 primary 'Wu, J.' 6 primary 'Jiang, X.' 7 primary 'Wang, Y.' 8 primary 'Cai, H.' 9 primary 'Xu, T.' 10 primary 'Zhou, A.' 11 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5JDS _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.130 _cell.length_a_esd ? _cell.length_b 83.130 _cell.length_b_esd ? _cell.length_c 73.230 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nanobody 15774.528 1 ? ? ? ? 2 polymer man 'Programmed cell death 1 ligand 1' 14336.434 1 ? ? 'UNP RESIDUES 18-132' ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 159 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Programmed death ligand 1,B7 homolog 1,B7-H1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TGQVQLQESGGGLVQPGGSLRLSCAASGKMSSRRCMAWFRQAPGKERERVAKLLTTSGSTYLADSVKGRFTISQNNAKST VYLQMNSLKPEDTAMYYCAADSFEDPTCTLVTSSGAFQYWGQGTQVTVSSGSMDPGGSHHHHHHHH ; ;TGQVQLQESGGGLVQPGGSLRLSCAASGKMSSRRCMAWFRQAPGKERERVAKLLTTSGSTYLADSVKGRFTISQNNAKST VYLQMNSLKPEDTAMYYCAADSFEDPTCTLVTSSGAFQYWGQGTQVTVSSGSMDPGGSHHHHHHHH ; B ? 2 'polypeptide(L)' no no ;MAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN AALQITDVKLQDAGVYRCMISYGGADYKRITVKVNALEHHHHHH ; ;MAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN AALQITDVKLQDAGVYRCMISYGGADYKRITVKVNALEHHHHHH ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLY n 1 3 GLN n 1 4 VAL n 1 5 GLN n 1 6 LEU n 1 7 GLN n 1 8 GLU n 1 9 SER n 1 10 GLY n 1 11 GLY n 1 12 GLY n 1 13 LEU n 1 14 VAL n 1 15 GLN n 1 16 PRO n 1 17 GLY n 1 18 GLY n 1 19 SER n 1 20 LEU n 1 21 ARG n 1 22 LEU n 1 23 SER n 1 24 CYS n 1 25 ALA n 1 26 ALA n 1 27 SER n 1 28 GLY n 1 29 LYS n 1 30 MET n 1 31 SER n 1 32 SER n 1 33 ARG n 1 34 ARG n 1 35 CYS n 1 36 MET n 1 37 ALA n 1 38 TRP n 1 39 PHE n 1 40 ARG n 1 41 GLN n 1 42 ALA n 1 43 PRO n 1 44 GLY n 1 45 LYS n 1 46 GLU n 1 47 ARG n 1 48 GLU n 1 49 ARG n 1 50 VAL n 1 51 ALA n 1 52 LYS n 1 53 LEU n 1 54 LEU n 1 55 THR n 1 56 THR n 1 57 SER n 1 58 GLY n 1 59 SER n 1 60 THR n 1 61 TYR n 1 62 LEU n 1 63 ALA n 1 64 ASP n 1 65 SER n 1 66 VAL n 1 67 LYS n 1 68 GLY n 1 69 ARG n 1 70 PHE n 1 71 THR n 1 72 ILE n 1 73 SER n 1 74 GLN n 1 75 ASN n 1 76 ASN n 1 77 ALA n 1 78 LYS n 1 79 SER n 1 80 THR n 1 81 VAL n 1 82 TYR n 1 83 LEU n 1 84 GLN n 1 85 MET n 1 86 ASN n 1 87 SER n 1 88 LEU n 1 89 LYS n 1 90 PRO n 1 91 GLU n 1 92 ASP n 1 93 THR n 1 94 ALA n 1 95 MET n 1 96 TYR n 1 97 TYR n 1 98 CYS n 1 99 ALA n 1 100 ALA n 1 101 ASP n 1 102 SER n 1 103 PHE n 1 104 GLU n 1 105 ASP n 1 106 PRO n 1 107 THR n 1 108 CYS n 1 109 THR n 1 110 LEU n 1 111 VAL n 1 112 THR n 1 113 SER n 1 114 SER n 1 115 GLY n 1 116 ALA n 1 117 PHE n 1 118 GLN n 1 119 TYR n 1 120 TRP n 1 121 GLY n 1 122 GLN n 1 123 GLY n 1 124 THR n 1 125 GLN n 1 126 VAL n 1 127 THR n 1 128 VAL n 1 129 SER n 1 130 SER n 1 131 GLY n 1 132 SER n 1 133 MET n 1 134 ASP n 1 135 PRO n 1 136 GLY n 1 137 GLY n 1 138 SER n 1 139 HIS n 1 140 HIS n 1 141 HIS n 1 142 HIS n 1 143 HIS n 1 144 HIS n 1 145 HIS n 1 146 HIS n 2 1 MET n 2 2 ALA n 2 3 PHE n 2 4 THR n 2 5 VAL n 2 6 THR n 2 7 VAL n 2 8 PRO n 2 9 LYS n 2 10 ASP n 2 11 LEU n 2 12 TYR n 2 13 VAL n 2 14 VAL n 2 15 GLU n 2 16 TYR n 2 17 GLY n 2 18 SER n 2 19 ASN n 2 20 MET n 2 21 THR n 2 22 ILE n 2 23 GLU n 2 24 CYS n 2 25 LYS n 2 26 PHE n 2 27 PRO n 2 28 VAL n 2 29 GLU n 2 30 LYS n 2 31 GLN n 2 32 LEU n 2 33 ASP n 2 34 LEU n 2 35 ALA n 2 36 ALA n 2 37 LEU n 2 38 ILE n 2 39 VAL n 2 40 TYR n 2 41 TRP n 2 42 GLU n 2 43 MET n 2 44 GLU n 2 45 ASP n 2 46 LYS n 2 47 ASN n 2 48 ILE n 2 49 ILE n 2 50 GLN n 2 51 PHE n 2 52 VAL n 2 53 HIS n 2 54 GLY n 2 55 GLU n 2 56 GLU n 2 57 ASP n 2 58 LEU n 2 59 LYS n 2 60 VAL n 2 61 GLN n 2 62 HIS n 2 63 SER n 2 64 SER n 2 65 TYR n 2 66 ARG n 2 67 GLN n 2 68 ARG n 2 69 ALA n 2 70 ARG n 2 71 LEU n 2 72 LEU n 2 73 LYS n 2 74 ASP n 2 75 GLN n 2 76 LEU n 2 77 SER n 2 78 LEU n 2 79 GLY n 2 80 ASN n 2 81 ALA n 2 82 ALA n 2 83 LEU n 2 84 GLN n 2 85 ILE n 2 86 THR n 2 87 ASP n 2 88 VAL n 2 89 LYS n 2 90 LEU n 2 91 GLN n 2 92 ASP n 2 93 ALA n 2 94 GLY n 2 95 VAL n 2 96 TYR n 2 97 ARG n 2 98 CYS n 2 99 MET n 2 100 ILE n 2 101 SER n 2 102 TYR n 2 103 GLY n 2 104 GLY n 2 105 ALA n 2 106 ASP n 2 107 TYR n 2 108 LYS n 2 109 ARG n 2 110 ILE n 2 111 THR n 2 112 VAL n 2 113 LYS n 2 114 VAL n 2 115 ASN n 2 116 ALA n 2 117 LEU n 2 118 GLU n 2 119 HIS n 2 120 HIS n 2 121 HIS n 2 122 HIS n 2 123 HIS n 2 124 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 146 ? ? ? ? ? ? ? ? ? Camelidae 9835 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 124 Human ? 'CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5JDS 5JDS ? 1 ? 1 2 UNP PD1L1_HUMAN Q9NZQ7 ? 2 ;AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNA ALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA ; 18 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5JDS B 1 ? 146 ? 5JDS -1 ? 144 ? -1 144 2 2 5JDS A 2 ? 116 ? Q9NZQ7 18 ? 132 ? 18 132 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 5JDS MET A 1 ? UNP Q9NZQ7 ? ? 'expression tag' 17 1 2 5JDS LEU A 117 ? UNP Q9NZQ7 ? ? 'expression tag' 133 2 2 5JDS GLU A 118 ? UNP Q9NZQ7 ? ? 'expression tag' 134 3 2 5JDS HIS A 119 ? UNP Q9NZQ7 ? ? 'expression tag' 135 4 2 5JDS HIS A 120 ? UNP Q9NZQ7 ? ? 'expression tag' 136 5 2 5JDS HIS A 121 ? UNP Q9NZQ7 ? ? 'expression tag' 137 6 2 5JDS HIS A 122 ? UNP Q9NZQ7 ? ? 'expression tag' 138 7 2 5JDS HIS A 123 ? UNP Q9NZQ7 ? ? 'expression tag' 139 8 2 5JDS HIS A 124 ? UNP Q9NZQ7 ? ? 'expression tag' 140 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JDS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIQUID DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2M NaCl, 1.4M (NH4)2SO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type MARRESEARCH _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9777 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9777 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JDS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 51.34 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31640 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.05 _refine.aniso_B[1][2] 0.05 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.17 _refine.B_iso_max ? _refine.B_iso_mean 25.983 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5JDS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 41.60 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29996 _refine.ls_number_reflns_R_free 1611 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.83 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.17969 _refine.ls_R_factor_R_free 0.20439 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.17839 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.095 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.657 _refine.overall_SU_ML 0.061 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5JDS _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1879 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 2048 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 41.60 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 0.020 1930 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1836 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.455 1.958 2617 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.718 3.003 4218 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.740 5.000 246 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 33.408 24.286 84 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.237 15.000 342 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.879 15.000 12 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.084 0.200 293 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 2194 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 442 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.210 1.667 972 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.210 1.665 971 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.024 2.491 1213 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.023 2.492 1214 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.680 1.904 958 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.668 1.896 955 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.679 2.753 1392 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.439 13.938 2116 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.325 13.647 2075 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.number_reflns_R_work 2193 _refine_ls_shell.percent_reflns_obs 99.26 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.300 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5JDS _struct.title 'Crystal structure of PD-L1 complexed with a nanobody at 1.7 Angstron resolution' _struct.pdbx_descriptor 'Nanobody, Programmed cell death 1 ligand 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JDS _struct_keywords.text 'Nanobody, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 3 ? I N N 6 ? J N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 29 ? ARG A 33 ? LYS B 27 ARG B 31 5 ? 5 HELX_P HELX_P2 AA2 LYS A 89 ? THR A 93 ? LYS B 87 THR B 91 5 ? 5 HELX_P HELX_P3 AA3 PRO A 106 ? VAL A 111 ? PRO B 104 VAL B 109 1 ? 6 HELX_P HELX_P4 AA4 SER A 113 ? PHE A 117 ? SER B 111 PHE B 115 5 ? 5 HELX_P HELX_P5 AA5 LYS B 73 ? LEU B 78 ? LYS A 89 LEU A 94 5 ? 6 HELX_P HELX_P6 AA6 LYS B 89 ? ALA B 93 ? LYS A 105 ALA A 109 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 98 SG A ? B CYS 22 B CYS 96 1_555 ? ? ? ? ? ? ? 2.081 ? disulf2 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 98 SG B ? B CYS 22 B CYS 96 1_555 ? ? ? ? ? ? ? 1.993 ? disulf3 disulf ? ? A CYS 35 SG ? ? ? 1_555 A CYS 108 SG ? ? B CYS 33 B CYS 106 1_555 ? ? ? ? ? ? ? 2.032 ? disulf4 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 98 SG ? ? A CYS 40 A CYS 114 1_555 ? ? ? ? ? ? ? 2.011 ? metalc1 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 201 B HOH 367 1_555 ? ? ? ? ? ? ? 3.030 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 105 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 103 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 106 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 104 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.67 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 4 ? AA4 ? 6 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 5 ? SER A 9 ? GLN B 3 SER B 7 AA1 2 LEU A 20 ? SER A 27 ? LEU B 18 SER B 25 AA1 3 THR A 80 ? MET A 85 ? THR B 78 MET B 83 AA1 4 PHE A 70 ? GLN A 74 ? PHE B 68 GLN B 72 AA2 1 GLY A 12 ? VAL A 14 ? GLY B 10 VAL B 12 AA2 2 THR A 124 ? VAL A 128 ? THR B 122 VAL B 126 AA2 3 ALA A 94 ? ASP A 101 ? ALA B 92 ASP B 99 AA2 4 CYS A 35 ? GLN A 41 ? CYS B 33 GLN B 39 AA2 5 GLU A 48 ? LEU A 54 ? GLU B 46 LEU B 52 AA2 6 THR A 60 ? LEU A 62 ? THR B 58 LEU B 60 AA3 1 GLY A 12 ? VAL A 14 ? GLY B 10 VAL B 12 AA3 2 THR A 124 ? VAL A 128 ? THR B 122 VAL B 126 AA3 3 ALA A 94 ? ASP A 101 ? ALA B 92 ASP B 99 AA3 4 TYR A 119 ? TRP A 120 ? TYR B 117 TRP B 118 AA4 1 LEU B 11 ? GLU B 15 ? LEU A 27 GLU A 31 AA4 2 ALA B 105 ? ASN B 115 ? ALA A 121 ASN A 131 AA4 3 GLY B 94 ? SER B 101 ? GLY A 110 SER A 117 AA4 4 ILE B 38 ? MET B 43 ? ILE A 54 MET A 59 AA4 5 LYS B 46 ? VAL B 52 ? LYS A 62 VAL A 68 AA4 6 GLU B 55 ? GLU B 56 ? GLU A 71 GLU A 72 AA5 1 MET B 20 ? LYS B 25 ? MET A 36 LYS A 41 AA5 2 ASN B 80 ? ILE B 85 ? ASN A 96 ILE A 101 AA5 3 ALA B 69 ? LEU B 71 ? ALA A 85 LEU A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 7 ? N GLN B 5 O ALA A 25 ? O ALA B 23 AA1 2 3 N LEU A 20 ? N LEU B 18 O MET A 85 ? O MET B 83 AA1 3 4 O TYR A 82 ? O TYR B 80 N SER A 73 ? N SER B 71 AA2 1 2 N GLY A 12 ? N GLY B 10 O THR A 127 ? O THR B 125 AA2 2 3 O THR A 124 ? O THR B 122 N TYR A 96 ? N TYR B 94 AA2 3 4 O TYR A 97 ? O TYR B 95 N PHE A 39 ? N PHE B 37 AA2 4 5 N TRP A 38 ? N TRP B 36 O VAL A 50 ? O VAL B 48 AA2 5 6 N LYS A 52 ? N LYS B 50 O TYR A 61 ? O TYR B 59 AA3 1 2 N GLY A 12 ? N GLY B 10 O THR A 127 ? O THR B 125 AA3 2 3 O THR A 124 ? O THR B 122 N TYR A 96 ? N TYR B 94 AA3 3 4 N ALA A 100 ? N ALA B 98 O TYR A 119 ? O TYR B 117 AA4 1 2 N VAL B 14 ? N VAL A 30 O LYS B 113 ? O LYS A 129 AA4 2 3 O ILE B 110 ? O ILE A 126 N TYR B 96 ? N TYR A 112 AA4 3 4 O MET B 99 ? O MET A 115 N TYR B 40 ? N TYR A 56 AA4 4 5 N TRP B 41 ? N TRP A 57 O ILE B 48 ? O ILE A 64 AA4 5 6 N VAL B 52 ? N VAL A 68 O GLU B 55 ? O GLU A 71 AA5 1 2 N CYS B 24 ? N CYS A 40 O ALA B 81 ? O ALA A 97 AA5 2 3 O GLN B 84 ? O GLN A 100 N ARG B 70 ? N ARG A 86 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NA 201 ? 3 'binding site for residue NA B 201' AC2 Software B CL 202 ? 3 'binding site for residue CL B 202' AC3 Software B CL 203 ? 2 'binding site for residue CL B 203' AC4 Software B CL 204 ? 2 'binding site for residue CL B 204' AC5 Software A SO4 201 ? 3 'binding site for residue SO4 A 201' AC6 Software A NA 202 ? 1 'binding site for residue NA A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 76 ? ASN B 74 . ? 1_555 ? 2 AC1 3 CL F . ? CL B 204 . ? 1_555 ? 3 AC1 3 HOH I . ? HOH B 367 . ? 1_555 ? 4 AC2 3 LYS B 30 ? LYS A 46 . ? 6_445 ? 5 AC2 3 TYR A 61 ? TYR B 59 . ? 1_555 ? 6 AC2 3 ASP A 64 ? ASP B 62 . ? 1_555 ? 7 AC3 2 HOH J . ? HOH A 305 . ? 6_445 ? 8 AC3 2 ARG A 49 ? ARG B 47 . ? 1_555 ? 9 AC4 2 ASN A 76 ? ASN B 74 . ? 1_555 ? 10 AC4 2 NA C . ? NA B 201 . ? 1_555 ? 11 AC5 3 TYR B 107 ? TYR A 123 . ? 1_555 ? 12 AC5 3 ARG B 109 ? ARG A 125 . ? 1_555 ? 13 AC5 3 GLN A 118 ? GLN B 116 . ? 1_555 ? 14 AC6 1 LEU B 32 ? LEU A 48 . ? 1_555 ? # _atom_sites.entry_id 5JDS _atom_sites.fract_transf_matrix[1][1] 0.012029 _atom_sites.fract_transf_matrix[1][2] 0.006945 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013890 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013656 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 -1 ? ? ? B . n A 1 2 GLY 2 0 ? ? ? B . n A 1 3 GLN 3 1 1 GLN GLN B . n A 1 4 VAL 4 2 2 VAL VAL B . n A 1 5 GLN 5 3 3 GLN GLN B . n A 1 6 LEU 6 4 4 LEU LEU B . n A 1 7 GLN 7 5 5 GLN GLN B . n A 1 8 GLU 8 6 6 GLU GLU B . n A 1 9 SER 9 7 7 SER SER B . n A 1 10 GLY 10 8 8 GLY GLY B . n A 1 11 GLY 11 9 9 GLY GLY B . n A 1 12 GLY 12 10 10 GLY GLY B . n A 1 13 LEU 13 11 11 LEU LEU B . n A 1 14 VAL 14 12 12 VAL VAL B . n A 1 15 GLN 15 13 13 GLN GLN B . n A 1 16 PRO 16 14 14 PRO PRO B . n A 1 17 GLY 17 15 15 GLY GLY B . n A 1 18 GLY 18 16 16 GLY GLY B . n A 1 19 SER 19 17 17 SER SER B . n A 1 20 LEU 20 18 18 LEU LEU B . n A 1 21 ARG 21 19 19 ARG ARG B . n A 1 22 LEU 22 20 20 LEU LEU B . n A 1 23 SER 23 21 21 SER SER B . n A 1 24 CYS 24 22 22 CYS CYS B . n A 1 25 ALA 25 23 23 ALA ALA B . n A 1 26 ALA 26 24 24 ALA ALA B . n A 1 27 SER 27 25 25 SER SER B . n A 1 28 GLY 28 26 26 GLY GLY B . n A 1 29 LYS 29 27 27 LYS LYS B . n A 1 30 MET 30 28 28 MET MET B . n A 1 31 SER 31 29 29 SER SER B . n A 1 32 SER 32 30 30 SER SER B . n A 1 33 ARG 33 31 31 ARG ARG B . n A 1 34 ARG 34 32 32 ARG ARG B . n A 1 35 CYS 35 33 33 CYS CYS B . n A 1 36 MET 36 34 34 MET MET B . n A 1 37 ALA 37 35 35 ALA ALA B . n A 1 38 TRP 38 36 36 TRP TRP B . n A 1 39 PHE 39 37 37 PHE PHE B . n A 1 40 ARG 40 38 38 ARG ARG B . n A 1 41 GLN 41 39 39 GLN GLN B . n A 1 42 ALA 42 40 40 ALA ALA B . n A 1 43 PRO 43 41 41 PRO PRO B . n A 1 44 GLY 44 42 42 GLY GLY B . n A 1 45 LYS 45 43 43 LYS LYS B . n A 1 46 GLU 46 44 44 GLU GLU B . n A 1 47 ARG 47 45 45 ARG ARG B . n A 1 48 GLU 48 46 46 GLU GLU B . n A 1 49 ARG 49 47 47 ARG ARG B . n A 1 50 VAL 50 48 48 VAL VAL B . n A 1 51 ALA 51 49 49 ALA ALA B . n A 1 52 LYS 52 50 50 LYS LYS B . n A 1 53 LEU 53 51 51 LEU LEU B . n A 1 54 LEU 54 52 52 LEU LEU B . n A 1 55 THR 55 53 53 THR THR B . n A 1 56 THR 56 54 54 THR THR B . n A 1 57 SER 57 55 55 SER SER B . n A 1 58 GLY 58 56 56 GLY GLY B . n A 1 59 SER 59 57 57 SER SER B . n A 1 60 THR 60 58 58 THR THR B . n A 1 61 TYR 61 59 59 TYR TYR B . n A 1 62 LEU 62 60 60 LEU LEU B . n A 1 63 ALA 63 61 61 ALA ALA B . n A 1 64 ASP 64 62 62 ASP ASP B . n A 1 65 SER 65 63 63 SER SER B . n A 1 66 VAL 66 64 64 VAL VAL B . n A 1 67 LYS 67 65 65 LYS LYS B . n A 1 68 GLY 68 66 66 GLY GLY B . n A 1 69 ARG 69 67 67 ARG ARG B . n A 1 70 PHE 70 68 68 PHE PHE B . n A 1 71 THR 71 69 69 THR THR B . n A 1 72 ILE 72 70 70 ILE ILE B . n A 1 73 SER 73 71 71 SER SER B . n A 1 74 GLN 74 72 72 GLN GLN B . n A 1 75 ASN 75 73 73 ASN ASN B . n A 1 76 ASN 76 74 74 ASN ASN B . n A 1 77 ALA 77 75 75 ALA ALA B . n A 1 78 LYS 78 76 76 LYS LYS B . n A 1 79 SER 79 77 77 SER SER B . n A 1 80 THR 80 78 78 THR THR B . n A 1 81 VAL 81 79 79 VAL VAL B . n A 1 82 TYR 82 80 80 TYR TYR B . n A 1 83 LEU 83 81 81 LEU LEU B . n A 1 84 GLN 84 82 82 GLN GLN B . n A 1 85 MET 85 83 83 MET MET B . n A 1 86 ASN 86 84 84 ASN ASN B . n A 1 87 SER 87 85 85 SER SER B . n A 1 88 LEU 88 86 86 LEU LEU B . n A 1 89 LYS 89 87 87 LYS LYS B . n A 1 90 PRO 90 88 88 PRO PRO B . n A 1 91 GLU 91 89 89 GLU GLU B . n A 1 92 ASP 92 90 90 ASP ASP B . n A 1 93 THR 93 91 91 THR THR B . n A 1 94 ALA 94 92 92 ALA ALA B . n A 1 95 MET 95 93 93 MET MET B . n A 1 96 TYR 96 94 94 TYR TYR B . n A 1 97 TYR 97 95 95 TYR TYR B . n A 1 98 CYS 98 96 96 CYS CYS B . n A 1 99 ALA 99 97 97 ALA ALA B . n A 1 100 ALA 100 98 98 ALA ALA B . n A 1 101 ASP 101 99 99 ASP ASP B . n A 1 102 SER 102 100 100 SER SER B . n A 1 103 PHE 103 101 101 PHE PHE B . n A 1 104 GLU 104 102 102 GLU GLU B . n A 1 105 ASP 105 103 103 ASP ASP B . n A 1 106 PRO 106 104 104 PRO PRO B . n A 1 107 THR 107 105 105 THR THR B . n A 1 108 CYS 108 106 106 CYS CYS B . n A 1 109 THR 109 107 107 THR THR B . n A 1 110 LEU 110 108 108 LEU LEU B . n A 1 111 VAL 111 109 109 VAL VAL B . n A 1 112 THR 112 110 110 THR THR B . n A 1 113 SER 113 111 111 SER SER B . n A 1 114 SER 114 112 112 SER SER B . n A 1 115 GLY 115 113 113 GLY GLY B . n A 1 116 ALA 116 114 114 ALA ALA B . n A 1 117 PHE 117 115 115 PHE PHE B . n A 1 118 GLN 118 116 116 GLN GLN B . n A 1 119 TYR 119 117 117 TYR TYR B . n A 1 120 TRP 120 118 118 TRP TRP B . n A 1 121 GLY 121 119 119 GLY GLY B . n A 1 122 GLN 122 120 120 GLN GLN B . n A 1 123 GLY 123 121 121 GLY GLY B . n A 1 124 THR 124 122 122 THR THR B . n A 1 125 GLN 125 123 123 GLN GLN B . n A 1 126 VAL 126 124 124 VAL VAL B . n A 1 127 THR 127 125 125 THR THR B . n A 1 128 VAL 128 126 126 VAL VAL B . n A 1 129 SER 129 127 127 SER SER B . n A 1 130 SER 130 128 ? ? ? B . n A 1 131 GLY 131 129 ? ? ? B . n A 1 132 SER 132 130 ? ? ? B . n A 1 133 MET 133 131 ? ? ? B . n A 1 134 ASP 134 132 ? ? ? B . n A 1 135 PRO 135 133 ? ? ? B . n A 1 136 GLY 136 134 ? ? ? B . n A 1 137 GLY 137 135 ? ? ? B . n A 1 138 SER 138 136 ? ? ? B . n A 1 139 HIS 139 137 ? ? ? B . n A 1 140 HIS 140 138 ? ? ? B . n A 1 141 HIS 141 139 ? ? ? B . n A 1 142 HIS 142 140 ? ? ? B . n A 1 143 HIS 143 141 ? ? ? B . n A 1 144 HIS 144 142 ? ? ? B . n A 1 145 HIS 145 143 ? ? ? B . n A 1 146 HIS 146 144 ? ? ? B . n B 2 1 MET 1 17 ? ? ? A . n B 2 2 ALA 2 18 18 ALA ALA A . n B 2 3 PHE 3 19 19 PHE PHE A . n B 2 4 THR 4 20 20 THR THR A . n B 2 5 VAL 5 21 21 VAL VAL A . n B 2 6 THR 6 22 22 THR THR A . n B 2 7 VAL 7 23 23 VAL VAL A . n B 2 8 PRO 8 24 24 PRO PRO A . n B 2 9 LYS 9 25 25 LYS LYS A . n B 2 10 ASP 10 26 26 ASP ASP A . n B 2 11 LEU 11 27 27 LEU LEU A . n B 2 12 TYR 12 28 28 TYR TYR A . n B 2 13 VAL 13 29 29 VAL VAL A . n B 2 14 VAL 14 30 30 VAL VAL A . n B 2 15 GLU 15 31 31 GLU GLU A . n B 2 16 TYR 16 32 32 TYR TYR A . n B 2 17 GLY 17 33 33 GLY GLY A . n B 2 18 SER 18 34 34 SER SER A . n B 2 19 ASN 19 35 35 ASN ASN A . n B 2 20 MET 20 36 36 MET MET A . n B 2 21 THR 21 37 37 THR THR A . n B 2 22 ILE 22 38 38 ILE ILE A . n B 2 23 GLU 23 39 39 GLU GLU A . n B 2 24 CYS 24 40 40 CYS CYS A . n B 2 25 LYS 25 41 41 LYS LYS A . n B 2 26 PHE 26 42 42 PHE PHE A . n B 2 27 PRO 27 43 43 PRO PRO A . n B 2 28 VAL 28 44 44 VAL VAL A . n B 2 29 GLU 29 45 45 GLU GLU A . n B 2 30 LYS 30 46 46 LYS LYS A . n B 2 31 GLN 31 47 47 GLN GLN A . n B 2 32 LEU 32 48 48 LEU LEU A . n B 2 33 ASP 33 49 49 ASP ASP A . n B 2 34 LEU 34 50 50 LEU LEU A . n B 2 35 ALA 35 51 51 ALA ALA A . n B 2 36 ALA 36 52 52 ALA ALA A . n B 2 37 LEU 37 53 53 LEU LEU A . n B 2 38 ILE 38 54 54 ILE ILE A . n B 2 39 VAL 39 55 55 VAL VAL A . n B 2 40 TYR 40 56 56 TYR TYR A . n B 2 41 TRP 41 57 57 TRP TRP A . n B 2 42 GLU 42 58 58 GLU GLU A . n B 2 43 MET 43 59 59 MET MET A . n B 2 44 GLU 44 60 60 GLU GLU A . n B 2 45 ASP 45 61 61 ASP ASP A . n B 2 46 LYS 46 62 62 LYS LYS A . n B 2 47 ASN 47 63 63 ASN ASN A . n B 2 48 ILE 48 64 64 ILE ILE A . n B 2 49 ILE 49 65 65 ILE ILE A . n B 2 50 GLN 50 66 66 GLN GLN A . n B 2 51 PHE 51 67 67 PHE PHE A . n B 2 52 VAL 52 68 68 VAL VAL A . n B 2 53 HIS 53 69 69 HIS HIS A . n B 2 54 GLY 54 70 70 GLY GLY A . n B 2 55 GLU 55 71 71 GLU GLU A . n B 2 56 GLU 56 72 72 GLU GLU A . n B 2 57 ASP 57 73 73 ASP ASP A . n B 2 58 LEU 58 74 74 LEU LEU A . n B 2 59 LYS 59 75 75 LYS LYS A . n B 2 60 VAL 60 76 76 VAL VAL A . n B 2 61 GLN 61 77 77 GLN GLN A . n B 2 62 HIS 62 78 78 HIS HIS A . n B 2 63 SER 63 79 79 SER SER A . n B 2 64 SER 64 80 80 SER SER A . n B 2 65 TYR 65 81 81 TYR TYR A . n B 2 66 ARG 66 82 82 ARG ARG A . n B 2 67 GLN 67 83 83 GLN GLN A . n B 2 68 ARG 68 84 84 ARG ARG A . n B 2 69 ALA 69 85 85 ALA ALA A . n B 2 70 ARG 70 86 86 ARG ARG A . n B 2 71 LEU 71 87 87 LEU LEU A . n B 2 72 LEU 72 88 88 LEU LEU A . n B 2 73 LYS 73 89 89 LYS LYS A . n B 2 74 ASP 74 90 90 ASP ASP A . n B 2 75 GLN 75 91 91 GLN GLN A . n B 2 76 LEU 76 92 92 LEU LEU A . n B 2 77 SER 77 93 93 SER SER A . n B 2 78 LEU 78 94 94 LEU LEU A . n B 2 79 GLY 79 95 95 GLY GLY A . n B 2 80 ASN 80 96 96 ASN ASN A . n B 2 81 ALA 81 97 97 ALA ALA A . n B 2 82 ALA 82 98 98 ALA ALA A . n B 2 83 LEU 83 99 99 LEU LEU A . n B 2 84 GLN 84 100 100 GLN GLN A . n B 2 85 ILE 85 101 101 ILE ILE A . n B 2 86 THR 86 102 102 THR THR A . n B 2 87 ASP 87 103 103 ASP ASP A . n B 2 88 VAL 88 104 104 VAL VAL A . n B 2 89 LYS 89 105 105 LYS LYS A . n B 2 90 LEU 90 106 106 LEU LEU A . n B 2 91 GLN 91 107 107 GLN GLN A . n B 2 92 ASP 92 108 108 ASP ASP A . n B 2 93 ALA 93 109 109 ALA ALA A . n B 2 94 GLY 94 110 110 GLY GLY A . n B 2 95 VAL 95 111 111 VAL VAL A . n B 2 96 TYR 96 112 112 TYR TYR A . n B 2 97 ARG 97 113 113 ARG ARG A . n B 2 98 CYS 98 114 114 CYS CYS A . n B 2 99 MET 99 115 115 MET MET A . n B 2 100 ILE 100 116 116 ILE ILE A . n B 2 101 SER 101 117 117 SER SER A . n B 2 102 TYR 102 118 118 TYR TYR A . n B 2 103 GLY 103 119 119 GLY GLY A . n B 2 104 GLY 104 120 120 GLY GLY A . n B 2 105 ALA 105 121 121 ALA ALA A . n B 2 106 ASP 106 122 122 ASP ASP A . n B 2 107 TYR 107 123 123 TYR TYR A . n B 2 108 LYS 108 124 124 LYS LYS A . n B 2 109 ARG 109 125 125 ARG ARG A . n B 2 110 ILE 110 126 126 ILE ILE A . n B 2 111 THR 111 127 127 THR THR A . n B 2 112 VAL 112 128 128 VAL VAL A . n B 2 113 LYS 113 129 129 LYS LYS A . n B 2 114 VAL 114 130 130 VAL VAL A . n B 2 115 ASN 115 131 131 ASN ASN A . n B 2 116 ALA 116 132 132 ALA ALA A . n B 2 117 LEU 117 133 ? ? ? A . n B 2 118 GLU 118 134 ? ? ? A . n B 2 119 HIS 119 135 ? ? ? A . n B 2 120 HIS 120 136 ? ? ? A . n B 2 121 HIS 121 137 ? ? ? A . n B 2 122 HIS 122 138 ? ? ? A . n B 2 123 HIS 123 139 ? ? ? A . n B 2 124 HIS 124 140 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 201 1 NA NA B . D 4 CL 1 202 1 CL CL B . E 4 CL 1 203 1 CL CL B . F 4 CL 1 204 1 CL CL B . G 5 SO4 1 201 1 SO4 SO4 A . H 3 NA 1 202 1 NA NA A . I 6 HOH 1 301 181 HOH HOH B . I 6 HOH 2 302 174 HOH HOH B . I 6 HOH 3 303 107 HOH HOH B . I 6 HOH 4 304 148 HOH HOH B . I 6 HOH 5 305 19 HOH HOH B . I 6 HOH 6 306 154 HOH HOH B . I 6 HOH 7 307 8 HOH HOH B . I 6 HOH 8 308 130 HOH HOH B . I 6 HOH 9 309 81 HOH HOH B . I 6 HOH 10 310 72 HOH HOH B . I 6 HOH 11 311 14 HOH HOH B . I 6 HOH 12 312 143 HOH HOH B . I 6 HOH 13 313 21 HOH HOH B . I 6 HOH 14 314 127 HOH HOH B . I 6 HOH 15 315 71 HOH HOH B . I 6 HOH 16 316 65 HOH HOH B . I 6 HOH 17 317 133 HOH HOH B . I 6 HOH 18 318 183 HOH HOH B . I 6 HOH 19 319 77 HOH HOH B . I 6 HOH 20 320 125 HOH HOH B . I 6 HOH 21 321 28 HOH HOH B . I 6 HOH 22 322 87 HOH HOH B . I 6 HOH 23 323 66 HOH HOH B . I 6 HOH 24 324 114 HOH HOH B . I 6 HOH 25 325 67 HOH HOH B . I 6 HOH 26 326 168 HOH HOH B . I 6 HOH 27 327 46 HOH HOH B . I 6 HOH 28 328 109 HOH HOH B . I 6 HOH 29 329 15 HOH HOH B . I 6 HOH 30 330 22 HOH HOH B . I 6 HOH 31 331 57 HOH HOH B . I 6 HOH 32 332 4 HOH HOH B . I 6 HOH 33 333 16 HOH HOH B . I 6 HOH 34 334 141 HOH HOH B . I 6 HOH 35 335 108 HOH HOH B . I 6 HOH 36 336 38 HOH HOH B . I 6 HOH 37 337 140 HOH HOH B . I 6 HOH 38 338 92 HOH HOH B . I 6 HOH 39 339 123 HOH HOH B . I 6 HOH 40 340 158 HOH HOH B . I 6 HOH 41 341 43 HOH HOH B . I 6 HOH 42 342 34 HOH HOH B . I 6 HOH 43 343 106 HOH HOH B . I 6 HOH 44 344 104 HOH HOH B . I 6 HOH 45 345 166 HOH HOH B . I 6 HOH 46 346 101 HOH HOH B . I 6 HOH 47 347 157 HOH HOH B . I 6 HOH 48 348 110 HOH HOH B . I 6 HOH 49 349 121 HOH HOH B . I 6 HOH 50 350 10 HOH HOH B . I 6 HOH 51 351 144 HOH HOH B . I 6 HOH 52 352 74 HOH HOH B . I 6 HOH 53 353 137 HOH HOH B . I 6 HOH 54 354 116 HOH HOH B . I 6 HOH 55 355 94 HOH HOH B . I 6 HOH 56 356 180 HOH HOH B . I 6 HOH 57 357 147 HOH HOH B . I 6 HOH 58 358 32 HOH HOH B . I 6 HOH 59 359 142 HOH HOH B . I 6 HOH 60 360 13 HOH HOH B . I 6 HOH 61 361 170 HOH HOH B . I 6 HOH 62 362 113 HOH HOH B . I 6 HOH 63 363 60 HOH HOH B . I 6 HOH 64 364 47 HOH HOH B . I 6 HOH 65 365 45 HOH HOH B . I 6 HOH 66 366 91 HOH HOH B . I 6 HOH 67 367 11 HOH HOH B . I 6 HOH 68 368 69 HOH HOH B . I 6 HOH 69 369 175 HOH HOH B . I 6 HOH 70 370 105 HOH HOH B . I 6 HOH 71 371 93 HOH HOH B . I 6 HOH 72 372 73 HOH HOH B . I 6 HOH 73 373 51 HOH HOH B . I 6 HOH 74 374 39 HOH HOH B . I 6 HOH 75 375 90 HOH HOH B . I 6 HOH 76 376 97 HOH HOH B . I 6 HOH 77 377 176 HOH HOH B . I 6 HOH 78 378 78 HOH HOH B . I 6 HOH 79 379 136 HOH HOH B . I 6 HOH 80 380 135 HOH HOH B . I 6 HOH 81 381 99 HOH HOH B . I 6 HOH 82 382 149 HOH HOH B . I 6 HOH 83 383 96 HOH HOH B . J 6 HOH 1 301 131 HOH HOH A . J 6 HOH 2 302 59 HOH HOH A . J 6 HOH 3 303 1 HOH HOH A . J 6 HOH 4 304 120 HOH HOH A . J 6 HOH 5 305 182 HOH HOH A . J 6 HOH 6 306 159 HOH HOH A . J 6 HOH 7 307 31 HOH HOH A . J 6 HOH 8 308 49 HOH HOH A . J 6 HOH 9 309 152 HOH HOH A . J 6 HOH 10 310 50 HOH HOH A . J 6 HOH 11 311 115 HOH HOH A . J 6 HOH 12 312 68 HOH HOH A . J 6 HOH 13 313 23 HOH HOH A . J 6 HOH 14 314 58 HOH HOH A . J 6 HOH 15 315 53 HOH HOH A . J 6 HOH 16 316 138 HOH HOH A . J 6 HOH 17 317 95 HOH HOH A . J 6 HOH 18 318 76 HOH HOH A . J 6 HOH 19 319 146 HOH HOH A . J 6 HOH 20 320 30 HOH HOH A . J 6 HOH 21 321 89 HOH HOH A . J 6 HOH 22 322 126 HOH HOH A . J 6 HOH 23 323 145 HOH HOH A . J 6 HOH 24 324 171 HOH HOH A . J 6 HOH 25 325 54 HOH HOH A . J 6 HOH 26 326 112 HOH HOH A . J 6 HOH 27 327 2 HOH HOH A . J 6 HOH 28 328 24 HOH HOH A . J 6 HOH 29 329 153 HOH HOH A . J 6 HOH 30 330 48 HOH HOH A . J 6 HOH 31 331 26 HOH HOH A . J 6 HOH 32 332 12 HOH HOH A . J 6 HOH 33 333 100 HOH HOH A . J 6 HOH 34 334 156 HOH HOH A . J 6 HOH 35 335 7 HOH HOH A . J 6 HOH 36 336 5 HOH HOH A . J 6 HOH 37 337 70 HOH HOH A . J 6 HOH 38 338 3 HOH HOH A . J 6 HOH 39 339 42 HOH HOH A . J 6 HOH 40 340 119 HOH HOH A . J 6 HOH 41 341 151 HOH HOH A . J 6 HOH 42 342 55 HOH HOH A . J 6 HOH 43 343 83 HOH HOH A . J 6 HOH 44 344 117 HOH HOH A . J 6 HOH 45 345 102 HOH HOH A . J 6 HOH 46 346 111 HOH HOH A . J 6 HOH 47 347 44 HOH HOH A . J 6 HOH 48 348 173 HOH HOH A . J 6 HOH 49 349 52 HOH HOH A . J 6 HOH 50 350 6 HOH HOH A . J 6 HOH 51 351 139 HOH HOH A . J 6 HOH 52 352 56 HOH HOH A . J 6 HOH 53 353 124 HOH HOH A . J 6 HOH 54 354 61 HOH HOH A . J 6 HOH 55 355 64 HOH HOH A . J 6 HOH 56 356 98 HOH HOH A . J 6 HOH 57 357 122 HOH HOH A . J 6 HOH 58 358 41 HOH HOH A . J 6 HOH 59 359 118 HOH HOH A . J 6 HOH 60 360 40 HOH HOH A . J 6 HOH 61 361 82 HOH HOH A . J 6 HOH 62 362 35 HOH HOH A . J 6 HOH 63 363 132 HOH HOH A . J 6 HOH 64 364 27 HOH HOH A . J 6 HOH 65 365 62 HOH HOH A . J 6 HOH 66 366 37 HOH HOH A . J 6 HOH 67 367 63 HOH HOH A . J 6 HOH 68 368 177 HOH HOH A . J 6 HOH 69 369 172 HOH HOH A . J 6 HOH 70 370 103 HOH HOH A . J 6 HOH 71 371 17 HOH HOH A . J 6 HOH 72 372 129 HOH HOH A . J 6 HOH 73 373 155 HOH HOH A . J 6 HOH 74 374 79 HOH HOH A . J 6 HOH 75 375 86 HOH HOH A . J 6 HOH 76 376 128 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2080 ? 1 MORE -61 ? 1 'SSA (A^2)' 11660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-04-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 13.1969 -47.0791 -12.5326 0.0526 0.0451 0.0288 0.0000 0.0001 -0.0124 0.8752 1.6173 1.8728 -0.3223 -0.4066 1.4231 -0.0554 -0.1457 0.0822 0.1195 0.0468 0.0171 0.0853 -0.0291 0.0087 'X-RAY DIFFRACTION' 2 ? refined 23.6916 -52.5211 -37.5199 0.0440 0.0566 0.0462 -0.0267 -0.0072 0.0220 1.2046 1.4572 0.8358 -0.0872 -0.3271 -0.2923 -0.0316 0.1741 -0.0646 -0.1522 -0.0260 -0.0371 0.0541 -0.0288 0.0577 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 B 1 ? ? B 127 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 18 ? ? A 132 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 111 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CL _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 CL _pdbx_validate_symm_contact.auth_seq_id_1 203 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 305 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_445 _pdbx_validate_symm_contact.dist 2.04 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 113 ? ? CZ A ARG 113 ? ? NH1 A ARG 113 ? ? 125.01 120.30 4.71 0.50 N 2 1 NE A ARG 113 ? ? CZ A ARG 113 ? ? NH2 A ARG 113 ? ? 114.85 120.30 -5.45 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA B 92 ? ? 179.87 165.63 2 1 GLU A 60 ? ? 52.53 -112.35 3 1 TYR A 118 ? ? -163.49 69.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B THR -1 ? A THR 1 2 1 Y 1 B GLY 0 ? A GLY 2 3 1 Y 1 B SER 128 ? A SER 130 4 1 Y 1 B GLY 129 ? A GLY 131 5 1 Y 1 B SER 130 ? A SER 132 6 1 Y 1 B MET 131 ? A MET 133 7 1 Y 1 B ASP 132 ? A ASP 134 8 1 Y 1 B PRO 133 ? A PRO 135 9 1 Y 1 B GLY 134 ? A GLY 136 10 1 Y 1 B GLY 135 ? A GLY 137 11 1 Y 1 B SER 136 ? A SER 138 12 1 Y 1 B HIS 137 ? A HIS 139 13 1 Y 1 B HIS 138 ? A HIS 140 14 1 Y 1 B HIS 139 ? A HIS 141 15 1 Y 1 B HIS 140 ? A HIS 142 16 1 Y 1 B HIS 141 ? A HIS 143 17 1 Y 1 B HIS 142 ? A HIS 144 18 1 Y 1 B HIS 143 ? A HIS 145 19 1 Y 1 B HIS 144 ? A HIS 146 20 1 Y 1 A MET 17 ? B MET 1 21 1 Y 1 A LEU 133 ? B LEU 117 22 1 Y 1 A GLU 134 ? B GLU 118 23 1 Y 1 A HIS 135 ? B HIS 119 24 1 Y 1 A HIS 136 ? B HIS 120 25 1 Y 1 A HIS 137 ? B HIS 121 26 1 Y 1 A HIS 138 ? B HIS 122 27 1 Y 1 A HIS 139 ? B HIS 123 28 1 Y 1 A HIS 140 ? B HIS 124 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 'SULFATE ION' SO4 6 water HOH #