HEADER TRANSFERASE 17-APR-16 5JDY TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA Y7F MUTANT WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) AND TOXOFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), MUTANT, PRODUCT KEYWDS 2 COMPLEX, TOXIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JDY 1 REMARK REVDAT 5 06-MAR-24 5JDY 1 REMARK REVDAT 4 04-DEC-19 5JDY 1 REMARK REVDAT 3 20-SEP-17 5JDY 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JDY 1 JRNL REVDAT 1 04-MAY-16 5JDY 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 46170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7656 - 4.5251 0.94 2569 126 0.1247 0.1493 REMARK 3 2 4.5251 - 3.5988 0.95 2578 133 0.1148 0.1660 REMARK 3 3 3.5988 - 3.1459 0.97 2604 132 0.1299 0.1732 REMARK 3 4 3.1459 - 2.8592 0.97 2585 126 0.1379 0.1770 REMARK 3 5 2.8592 - 2.6548 0.97 2587 146 0.1372 0.1968 REMARK 3 6 2.6548 - 2.4986 0.98 2589 148 0.1393 0.1758 REMARK 3 7 2.4986 - 2.3737 0.98 2638 137 0.1358 0.1707 REMARK 3 8 2.3737 - 2.2705 0.97 2607 122 0.1571 0.2120 REMARK 3 9 2.2705 - 2.1832 0.98 2605 147 0.1950 0.2298 REMARK 3 10 2.1832 - 2.1080 0.99 2600 151 0.1347 0.1682 REMARK 3 11 2.1080 - 2.0421 0.99 2630 132 0.1343 0.1756 REMARK 3 12 2.0421 - 1.9838 0.99 2622 139 0.1461 0.1860 REMARK 3 13 1.9838 - 1.9316 0.99 2679 117 0.1745 0.2124 REMARK 3 14 1.9316 - 1.8845 0.99 2580 135 0.2594 0.3335 REMARK 3 15 1.8845 - 1.8417 0.98 2634 162 0.1771 0.2624 REMARK 3 16 1.8417 - 1.8026 0.97 2548 137 0.1729 0.2457 REMARK 3 17 1.8026 - 1.7665 0.82 2204 121 0.1564 0.2125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4303 REMARK 3 ANGLE : 0.923 5863 REMARK 3 CHIRALITY : 0.057 584 REMARK 3 PLANARITY : 0.006 786 REMARK 3 DIHEDRAL : 15.126 2521 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8989 19.9900 8.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0559 REMARK 3 T33: 0.0624 T12: 0.0054 REMARK 3 T13: -0.0031 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2640 L22: 2.9262 REMARK 3 L33: 2.7669 L12: -0.2872 REMARK 3 L13: 0.2354 L23: 1.8120 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.0465 S13: -0.0282 REMARK 3 S21: -0.1275 S22: 0.0010 S23: -0.0936 REMARK 3 S31: -0.0646 S32: 0.0183 S33: -0.0589 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3732 11.2095 17.1841 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: 0.0416 REMARK 3 T33: 0.0517 T12: -0.0026 REMARK 3 T13: -0.0100 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.5074 L22: 0.6551 REMARK 3 L33: 1.0397 L12: -0.2087 REMARK 3 L13: 0.1948 L23: 0.3662 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.0575 S13: -0.0963 REMARK 3 S21: 0.0193 S22: 0.0133 S23: -0.0479 REMARK 3 S31: 0.0365 S32: 0.0579 S33: -0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8610 18.2278 13.8978 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.0393 REMARK 3 T33: 0.0529 T12: 0.0013 REMARK 3 T13: 0.0032 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.7279 L22: 0.5828 REMARK 3 L33: 1.1809 L12: -0.1199 REMARK 3 L13: 0.0457 L23: -0.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.0341 S13: -0.0911 REMARK 3 S21: -0.0091 S22: 0.0090 S23: 0.0462 REMARK 3 S31: -0.0053 S32: -0.0942 S33: 0.0126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7557 30.7932 15.0359 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0461 REMARK 3 T33: 0.0430 T12: 0.0053 REMARK 3 T13: -0.0042 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.7091 L22: 2.1946 REMARK 3 L33: 2.6546 L12: 0.1022 REMARK 3 L13: -0.1511 L23: -2.0157 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: -0.0620 S13: 0.0482 REMARK 3 S21: 0.1516 S22: -0.0366 S23: 0.0188 REMARK 3 S31: -0.2392 S32: 0.1216 S33: 0.0126 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5277 55.7763 20.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0595 REMARK 3 T33: 0.0741 T12: 0.0103 REMARK 3 T13: 0.0138 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.6662 L22: 0.6478 REMARK 3 L33: 3.3513 L12: 0.1083 REMARK 3 L13: 0.6770 L23: 0.4105 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: 0.0953 S13: 0.0841 REMARK 3 S21: -0.1193 S22: 0.0541 S23: -0.0145 REMARK 3 S31: -0.2070 S32: 0.1720 S33: -0.1043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8140 45.2244 25.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0529 REMARK 3 T33: 0.0622 T12: 0.0016 REMARK 3 T13: -0.0062 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.2980 L22: 0.5127 REMARK 3 L33: 2.0666 L12: -0.3144 REMARK 3 L13: 0.9920 L23: -0.3315 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.0512 S13: -0.0268 REMARK 3 S21: 0.0126 S22: 0.0308 S23: -0.1074 REMARK 3 S31: -0.0407 S32: 0.1219 S33: -0.0380 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5049 47.1317 11.1766 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0560 REMARK 3 T33: 0.0416 T12: 0.0095 REMARK 3 T13: 0.0017 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 7.5977 L22: 1.6233 REMARK 3 L33: 3.2358 L12: -0.7538 REMARK 3 L13: 2.3609 L23: -0.9019 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: 0.3625 S13: 0.0794 REMARK 3 S21: -0.2656 S22: 0.0577 S23: -0.0631 REMARK 3 S31: 0.0019 S32: 0.0888 S33: 0.0615 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3593 39.1998 22.9932 REMARK 3 T TENSOR REMARK 3 T11: 0.0515 T22: 0.0415 REMARK 3 T33: 0.0423 T12: -0.0033 REMARK 3 T13: -0.0166 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.3105 L22: 0.5276 REMARK 3 L33: 0.5556 L12: -0.0612 REMARK 3 L13: -0.4979 L23: -0.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: 0.0722 S13: -0.1415 REMARK 3 S21: -0.0096 S22: -0.0109 S23: 0.0369 REMARK 3 S31: 0.0655 S32: -0.0522 S33: 0.0395 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3041 55.6703 22.9313 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.0392 REMARK 3 T33: 0.0455 T12: -0.0048 REMARK 3 T13: -0.0179 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.8796 L22: 1.2551 REMARK 3 L33: 0.9253 L12: -0.1082 REMARK 3 L13: 0.1301 L23: -0.1889 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0481 S13: 0.1126 REMARK 3 S21: -0.1158 S22: -0.0135 S23: 0.1111 REMARK 3 S31: -0.0791 S32: -0.0557 S33: 0.0230 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2563 48.6612 25.1685 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.0335 REMARK 3 T33: 0.0647 T12: -0.0122 REMARK 3 T13: -0.0356 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.0650 L22: 0.9829 REMARK 3 L33: 2.0446 L12: -0.2597 REMARK 3 L13: -0.0418 L23: -0.8155 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.0570 S13: 0.0050 REMARK 3 S21: -0.1450 S22: 0.0243 S23: 0.1701 REMARK 3 S31: 0.0085 S32: -0.1081 S33: -0.0277 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0110 53.8322 37.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.0399 REMARK 3 T33: 0.0856 T12: 0.0068 REMARK 3 T13: -0.0110 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.9487 L22: 2.2603 REMARK 3 L33: 0.7471 L12: 2.0534 REMARK 3 L13: -0.2217 L23: -0.3268 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.0705 S13: 0.0057 REMARK 3 S21: 0.3503 S22: -0.1082 S23: -0.2352 REMARK 3 S31: -0.0143 S32: 0.0496 S33: 0.0096 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0800 61.3587 31.9752 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0361 REMARK 3 T33: 0.0519 T12: -0.0006 REMARK 3 T13: -0.0143 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.7869 L22: 3.2604 REMARK 3 L33: 0.6362 L12: 0.6727 REMARK 3 L13: -0.3836 L23: 0.2725 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.0147 S13: 0.0787 REMARK 3 S21: -0.0395 S22: -0.0808 S23: -0.0864 REMARK 3 S31: -0.0628 S32: -0.0131 S33: 0.0282 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97670 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA Y7F MUTANT WITH BOUND SAH REMARK 200 REMARK 200 REMARK: ROD/NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, 6 MM SAH, AND REMARK 280 1 MM TOXOFLAVIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.58500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 124 OG SER B 199 2.15 REMARK 500 NH1 ARG B 174 OD1 ASP B 176 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 586 O HOH B 661 2546 2.16 REMARK 500 O HOH B 750 O HOH B 790 2546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 112 48.00 71.12 REMARK 500 ASN A 235 48.63 -149.02 REMARK 500 TRP B 112 50.98 71.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 855 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 856 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 858 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 859 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B 855 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 856 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 857 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 858 DISTANCE = 6.32 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOF A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOF B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JDY A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JDY B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JDY GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDY HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDY PHE A 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQADV 5JDY GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDY HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDY PHE B 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG PHE ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG PHE ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET TOF A 302 14 HET SAH B 301 26 HET TRS B 302 8 HET TOF B 303 14 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM TOF 1,6-DIMETHYLPYRIMIDO[5,4-E][1,2,4]TRIAZINE-5,7(1H,6H)- HETNAM 2 TOF DIONE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TOF TOXOFLAVIN HETSYN TRS TRIS BUFFER FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 TOF 2(C7 H7 N5 O2) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 8 HOH *917(H2 O) HELIX 1 AA1 ALA A 5 GLY A 11 5 7 HELIX 2 AA2 GLY A 12 ALA A 21 1 10 HELIX 3 AA3 ALA A 22 GLY A 36 1 15 HELIX 4 AA4 GLY A 51 ARG A 60 1 10 HELIX 5 AA5 SER A 71 TYR A 85 1 15 HELIX 6 AA6 ASP A 95 MET A 99 5 5 HELIX 7 AA7 LEU A 113 ALA A 117 5 5 HELIX 8 AA8 SER A 119 SER A 133 1 15 HELIX 9 AA9 SER A 150 GLY A 154 5 5 HELIX 10 AB1 PHE A 156 TYR A 159 5 4 HELIX 11 AB2 SER A 193 ALA A 204 1 12 HELIX 12 AB3 GLU A 217 THR A 223 1 7 HELIX 13 AB4 TRP A 229 ASN A 235 1 7 HELIX 14 AB5 ALA B 5 GLY B 11 5 7 HELIX 15 AB6 GLY B 12 ALA B 21 1 10 HELIX 16 AB7 ALA B 22 GLY B 36 1 15 HELIX 17 AB8 GLY B 51 ARG B 60 1 10 HELIX 18 AB9 SER B 71 GLY B 86 1 16 HELIX 19 AC1 LEU B 113 ALA B 117 5 5 HELIX 20 AC2 SER B 119 ALA B 132 1 14 HELIX 21 AC3 SER B 150 GLY B 154 5 5 HELIX 22 AC4 PHE B 156 TYR B 159 5 4 HELIX 23 AC5 SER B 193 ALA B 204 1 12 HELIX 24 AC6 GLU B 217 THR B 223 1 7 HELIX 25 AC7 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 46 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O ARG A 191 N TYR A 173 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 46 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O VAL B 141 N VAL B 108 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O CYS B 243 N LEU B 140 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N GLN B 212 O GLY B 240 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N ARG B 167 O ARG B 174 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 SER B 185 ARG B 191 -1 O ARG B 191 N TYR B 173 CISPEP 1 ASP A 182 PRO A 183 0 -5.43 CISPEP 2 ASP B 182 PRO B 183 0 -0.96 SITE 1 AC1 23 PHE A 7 PHE A 14 ARG A 24 ALA A 47 SITE 2 AC1 23 CYS A 48 GLY A 49 PHE A 53 ASP A 69 SITE 3 AC1 23 ILE A 70 SER A 71 MET A 74 ARG A 94 SITE 4 AC1 23 ASP A 95 VAL A 96 ALA A 111 TYR A 116 SITE 5 AC1 23 MET A 126 TOF A 302 HOH A 489 HOH A 528 SITE 6 AC1 23 HOH A 529 HOH A 531 HOH A 578 SITE 1 AC2 14 PHE A 14 PHE A 17 GLN A 23 GLU A 27 SITE 2 AC2 14 TRP A 112 ASN A 115 TYR A 116 VAL A 145 SITE 3 AC2 14 VAL A 161 PHE A 187 PHE A 189 LEU A 237 SITE 4 AC2 14 SAH A 301 HOH A 591 SITE 1 AC3 22 PHE B 7 PHE B 14 ARG B 24 ALA B 47 SITE 2 AC3 22 CYS B 48 GLY B 49 PHE B 53 ASP B 69 SITE 3 AC3 22 ILE B 70 ARG B 94 ASP B 95 VAL B 96 SITE 4 AC3 22 ALA B 111 TRP B 112 TYR B 116 MET B 126 SITE 5 AC3 22 TOF B 303 HOH B 484 HOH B 497 HOH B 513 SITE 6 AC3 22 HOH B 568 HOH B 597 SITE 1 AC4 12 GLN B 233 ASN B 234 ASN B 235 CYS B 236 SITE 2 AC4 12 HOH B 412 HOH B 440 HOH B 463 HOH B 482 SITE 3 AC4 12 HOH B 553 HOH B 570 HOH B 572 HOH B 665 SITE 1 AC5 11 PHE B 17 GLN B 23 TRP B 112 ASN B 115 SITE 2 AC5 11 TYR B 116 VAL B 161 PHE B 187 PHE B 189 SITE 3 AC5 11 LEU B 237 SAH B 301 HOH B 469 CRYST1 45.185 71.170 78.151 90.00 100.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022131 0.000000 0.004202 0.00000 SCALE2 0.000000 0.014051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013024 0.00000