HEADER TRANSFERASE 17-APR-16 5JDZ TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), PRODUCT, COMPLEX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JDZ 1 REMARK REVDAT 5 06-MAR-24 5JDZ 1 REMARK REVDAT 4 04-DEC-19 5JDZ 1 REMARK REVDAT 3 20-SEP-17 5JDZ 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JDZ 1 JRNL REVDAT 1 04-MAY-16 5JDZ 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 56499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3330 - 4.3390 0.96 2962 139 0.1593 0.1727 REMARK 3 2 4.3390 - 3.4446 0.99 2908 145 0.1437 0.1771 REMARK 3 3 3.4446 - 3.0094 1.00 2878 150 0.1679 0.1802 REMARK 3 4 3.0094 - 2.7343 0.99 2848 155 0.1789 0.2215 REMARK 3 5 2.7343 - 2.5384 0.99 2832 159 0.1865 0.2171 REMARK 3 6 2.5384 - 2.3887 1.00 2867 129 0.1894 0.2259 REMARK 3 7 2.3887 - 2.2691 0.99 2812 153 0.1834 0.2587 REMARK 3 8 2.2691 - 2.1704 0.98 2803 132 0.1850 0.2516 REMARK 3 9 2.1704 - 2.0868 0.98 2784 147 0.1872 0.2385 REMARK 3 10 2.0868 - 2.0148 0.97 2705 149 0.1939 0.2741 REMARK 3 11 2.0148 - 1.9518 0.96 2693 156 0.1899 0.2070 REMARK 3 12 1.9518 - 1.8960 0.95 2700 144 0.1913 0.2344 REMARK 3 13 1.8960 - 1.8461 0.93 2636 129 0.1909 0.2308 REMARK 3 14 1.8461 - 1.8011 0.92 2585 128 0.1920 0.2197 REMARK 3 15 1.8011 - 1.7601 0.91 2582 121 0.2017 0.2420 REMARK 3 16 1.7601 - 1.7227 0.90 2505 130 0.2144 0.2526 REMARK 3 17 1.7227 - 1.6882 0.90 2514 122 0.2156 0.2728 REMARK 3 18 1.6882 - 1.6563 0.88 2463 146 0.2087 0.2555 REMARK 3 19 1.6563 - 1.6268 0.88 2499 115 0.2157 0.2243 REMARK 3 20 1.6268 - 1.5992 0.77 2159 115 0.2247 0.2802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3824 REMARK 3 ANGLE : 0.808 5183 REMARK 3 CHIRALITY : 0.053 533 REMARK 3 PLANARITY : 0.005 677 REMARK 3 DIHEDRAL : 11.572 2224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5137 43.9333 80.5099 REMARK 3 T TENSOR REMARK 3 T11: 0.7702 T22: 0.8201 REMARK 3 T33: 1.0031 T12: 0.1803 REMARK 3 T13: -0.0252 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 7.0148 L22: 4.5318 REMARK 3 L33: 3.2841 L12: -2.4304 REMARK 3 L13: 4.0785 L23: -3.2057 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.0228 S13: 1.0293 REMARK 3 S21: -0.0118 S22: 0.2147 S23: 0.8868 REMARK 3 S31: -1.6331 S32: -2.0825 S33: -0.1255 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2194 31.2191 83.7998 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.1241 REMARK 3 T33: 0.1160 T12: 0.0056 REMARK 3 T13: -0.0083 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.8363 L22: 1.7401 REMARK 3 L33: 1.9650 L12: 0.4338 REMARK 3 L13: 0.0477 L23: -0.4866 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0775 S13: 0.1431 REMARK 3 S21: 0.0301 S22: 0.1413 S23: 0.1408 REMARK 3 S31: -0.0222 S32: -0.2408 S33: -0.0684 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7426 28.2529 50.3457 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1483 REMARK 3 T33: 0.1579 T12: 0.0296 REMARK 3 T13: 0.0363 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 2.5668 L22: 0.4652 REMARK 3 L33: 2.0373 L12: -0.0766 REMARK 3 L13: 0.1565 L23: -0.4719 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.4885 S13: -0.3246 REMARK 3 S21: 0.0410 S22: -0.0675 S23: 0.0319 REMARK 3 S31: 0.2488 S32: 0.2511 S33: 0.0378 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4723 30.0122 46.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1435 REMARK 3 T33: 0.1083 T12: 0.0276 REMARK 3 T13: 0.0144 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 3.8762 L22: 6.4867 REMARK 3 L33: 4.3691 L12: -1.5732 REMARK 3 L13: 1.0581 L23: -2.2882 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.3412 S13: 0.0227 REMARK 3 S21: 0.2101 S22: -0.0146 S23: -0.3400 REMARK 3 S31: 0.1305 S32: 0.3368 S33: 0.0212 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3851 40.4824 42.7236 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.2334 REMARK 3 T33: 0.3416 T12: -0.0775 REMARK 3 T13: 0.0288 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.9042 L22: 7.9292 REMARK 3 L33: 6.9716 L12: -1.8772 REMARK 3 L13: 3.3893 L23: -1.6410 REMARK 3 S TENSOR REMARK 3 S11: -0.1969 S12: -0.0779 S13: 0.8138 REMARK 3 S21: 0.3564 S22: 0.0480 S23: -0.8241 REMARK 3 S31: -1.0601 S32: 0.7345 S33: 0.1716 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3590 28.6521 35.6758 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.1898 REMARK 3 T33: 0.1674 T12: 0.0311 REMARK 3 T13: 0.0939 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 3.1105 L22: 4.0083 REMARK 3 L33: 2.0845 L12: 0.0620 REMARK 3 L13: -0.1920 L23: -1.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.2509 S12: 0.4511 S13: -0.3335 REMARK 3 S21: -0.4943 S22: 0.1769 S23: -0.3132 REMARK 3 S31: 0.2766 S32: 0.0840 S33: 0.0426 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7729 29.0882 36.1366 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1659 REMARK 3 T33: 0.1133 T12: -0.0175 REMARK 3 T13: 0.0131 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.6784 L22: 5.1070 REMARK 3 L33: 4.8089 L12: -1.1501 REMARK 3 L13: 2.1212 L23: -0.1876 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: 0.4337 S13: -0.2635 REMARK 3 S21: -0.3457 S22: -0.0942 S23: 0.3647 REMARK 3 S31: -0.0580 S32: -0.3186 S33: 0.1578 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2171 30.3799 46.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.0832 REMARK 3 T33: 0.2050 T12: -0.0222 REMARK 3 T13: 0.0599 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.7266 L22: 4.2249 REMARK 3 L33: 2.4836 L12: -0.5735 REMARK 3 L13: 0.5925 L23: 0.6511 REMARK 3 S TENSOR REMARK 3 S11: -0.1822 S12: -0.0952 S13: -0.3830 REMARK 3 S21: 0.0046 S22: -0.0118 S23: 0.4125 REMARK 3 S31: 0.1479 S32: -0.2765 S33: 0.1470 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0201 44.0351 45.6812 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.2359 REMARK 3 T33: 0.2223 T12: 0.0830 REMARK 3 T13: 0.0129 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.7982 L22: 4.2287 REMARK 3 L33: 5.1537 L12: 1.3939 REMARK 3 L13: 3.6216 L23: 2.2361 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.4375 S13: 0.2203 REMARK 3 S21: -0.1801 S22: 0.0413 S23: 0.3904 REMARK 3 S31: -0.7514 S32: -0.1560 S33: 0.1713 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9322 36.8038 41.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1996 REMARK 3 T33: 0.0865 T12: 0.0561 REMARK 3 T13: 0.0017 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.8650 L22: 6.4153 REMARK 3 L33: 3.5145 L12: -0.6919 REMARK 3 L13: -1.0232 L23: 0.7509 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: 0.3278 S13: 0.0330 REMARK 3 S21: -0.2485 S22: -0.0653 S23: 0.0857 REMARK 3 S31: -0.2795 S32: -0.3959 S33: 0.0107 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6121 25.4985 54.4974 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.1541 REMARK 3 T33: 0.2533 T12: -0.0424 REMARK 3 T13: 0.0869 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.6564 L22: 6.4963 REMARK 3 L33: 3.6271 L12: 0.4705 REMARK 3 L13: 0.9961 L23: 4.7525 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: -0.4526 S13: -0.5289 REMARK 3 S21: 0.4747 S22: -0.1455 S23: -0.0887 REMARK 3 S31: 0.7973 S32: -0.3038 S33: 0.2903 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3650 33.0686 56.6089 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2081 REMARK 3 T33: 0.1756 T12: 0.0355 REMARK 3 T13: 0.0481 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.6308 L22: 2.9272 REMARK 3 L33: 4.9629 L12: -0.0887 REMARK 3 L13: 0.4094 L23: 1.5693 REMARK 3 S TENSOR REMARK 3 S11: -0.1967 S12: -0.5250 S13: -0.1584 REMARK 3 S21: 0.5740 S22: 0.1738 S23: -0.0472 REMARK 3 S31: 0.2350 S32: -0.3441 S33: 0.0415 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS RESIDUAL ACTIVE SITE ELECTRON REMARK 3 DENSITY WHICH WE WERE UNABLE TO RELIABLY MODEL. REMARK 4 REMARK 4 5JDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA Y7A MUTANT WITH BOUND SAH REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, AND 6 MM SAH, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.41950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.36550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.81350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.36550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.41950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.81350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.25850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 65.62700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -72.36550 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 TYR B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 ILE B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 PHE B 17 REMARK 465 THR B 18 REMARK 465 GLN B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 THR B 181 REMARK 465 ASP B 182 REMARK 465 PRO B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 8 CG OD1 OD2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 470 HIS B 208 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 402 O HOH B 549 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 10 -70.81 -90.11 REMARK 500 TRP A 112 44.57 72.06 REMARK 500 ASN A 235 52.70 -145.35 REMARK 500 PRO B 88 31.07 -95.37 REMARK 500 TRP B 112 42.87 73.29 REMARK 500 ASN B 235 53.24 -150.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JDZ A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JDZ B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JDZ GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDZ HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDZ GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JDZ HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *552(H2 O) HELIX 1 AA1 GLY A 12 GLN A 19 1 8 HELIX 2 AA2 ALA A 21 GLY A 36 1 16 HELIX 3 AA3 GLY A 51 ARG A 60 1 10 HELIX 4 AA4 SER A 71 GLY A 86 1 16 HELIX 5 AA5 ASP A 95 MET A 99 5 5 HELIX 6 AA6 LEU A 113 ALA A 117 5 5 HELIX 7 AA7 SER A 119 SER A 133 1 15 HELIX 8 AA8 SER A 150 GLY A 154 5 5 HELIX 9 AA9 PHE A 156 TYR A 159 5 4 HELIX 10 AB1 SER A 193 ALA A 204 1 12 HELIX 11 AB2 GLU A 217 THR A 223 1 7 HELIX 12 AB3 TRP A 229 ASN A 235 1 7 HELIX 13 AB4 ARG B 24 GLY B 36 1 13 HELIX 14 AB5 GLY B 51 ARG B 60 1 10 HELIX 15 AB6 SER B 71 GLY B 86 1 16 HELIX 16 AB7 ASP B 95 MET B 99 5 5 HELIX 17 AB8 LEU B 113 ALA B 117 5 5 HELIX 18 AB9 SER B 119 SER B 133 1 15 HELIX 19 AC1 SER B 150 GLY B 154 5 5 HELIX 20 AC2 PHE B 156 TYR B 159 5 4 HELIX 21 AC3 SER B 193 GLY B 205 1 13 HELIX 22 AC4 GLU B 217 THR B 223 1 7 HELIX 23 AC5 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 46 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O ARG A 191 N TYR A 173 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 46 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O VAL B 141 N VAL B 108 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O LEU B 241 N ALA B 142 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N GLN B 212 O GLY B 240 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N ARG B 167 O ARG B 174 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 SER B 185 ARG B 191 -1 O PHE B 187 N ALA B 177 CISPEP 1 ASP A 182 PRO A 183 0 -6.51 SITE 1 AC1 23 TYR A 7 PHE A 14 ARG A 24 ALA A 47 SITE 2 AC1 23 CYS A 48 GLY A 49 PHE A 53 ASP A 69 SITE 3 AC1 23 ILE A 70 SER A 71 MET A 74 ARG A 94 SITE 4 AC1 23 ASP A 95 VAL A 96 ALA A 111 TRP A 112 SITE 5 AC1 23 TYR A 116 MET A 126 HOH A 431 HOH A 484 SITE 6 AC1 23 HOH A 533 HOH A 539 HOH A 546 SITE 1 AC2 18 ARG B 24 ALA B 47 CYS B 48 GLY B 49 SITE 2 AC2 18 PHE B 53 ASP B 69 ILE B 70 ARG B 94 SITE 3 AC2 18 ASP B 95 VAL B 96 ALA B 111 TRP B 112 SITE 4 AC2 18 TYR B 116 HOH B 413 HOH B 475 HOH B 494 SITE 5 AC2 18 HOH B 514 HOH B 553 CRYST1 46.839 65.627 144.731 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006909 0.00000