HEADER TRANSFERASE 17-APR-16 5JE0 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) AND 1,6-DIDEMETHYLTOXOFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), SUBSTRATE, COMPLEX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JE0 1 REMARK REVDAT 5 06-MAR-24 5JE0 1 REMARK REVDAT 4 04-DEC-19 5JE0 1 REMARK REVDAT 3 20-SEP-17 5JE0 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JE0 1 JRNL REVDAT 1 04-MAY-16 5JE0 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 75116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.7225 - 4.5724 0.94 2878 158 0.1631 0.1907 REMARK 3 2 4.5724 - 3.6396 0.73 1968 78 0.1362 0.1898 REMARK 3 3 3.6396 - 3.1825 0.96 2768 155 0.1581 0.2162 REMARK 3 4 3.1825 - 2.8929 1.00 2873 160 0.1659 0.1967 REMARK 3 5 2.8929 - 2.6863 1.00 2871 146 0.1686 0.2178 REMARK 3 6 2.6863 - 2.5284 1.00 2864 143 0.1752 0.1952 REMARK 3 7 2.5284 - 2.4021 1.00 2861 132 0.1782 0.2136 REMARK 3 8 2.4021 - 2.2978 0.96 2743 148 0.2306 0.2709 REMARK 3 9 2.2978 - 2.2095 0.97 2780 136 0.3056 0.3425 REMARK 3 10 2.2095 - 2.1334 0.94 2618 149 0.2316 0.3011 REMARK 3 11 2.1334 - 2.0668 1.00 2850 168 0.1864 0.2111 REMARK 3 12 2.0668 - 2.0078 1.00 2812 144 0.1881 0.2229 REMARK 3 13 2.0078 - 1.9550 0.96 2721 123 0.2476 0.3157 REMARK 3 14 1.9550 - 1.9074 0.99 2805 142 0.3797 0.4234 REMARK 3 15 1.9074 - 1.8640 0.89 2524 113 0.3739 0.3427 REMARK 3 16 1.8640 - 1.8244 0.95 2685 118 0.3246 0.3503 REMARK 3 17 1.8244 - 1.7880 1.00 2798 158 0.2346 0.2587 REMARK 3 18 1.7880 - 1.7542 1.00 2834 141 0.2064 0.2741 REMARK 3 19 1.7542 - 1.7229 1.00 2783 148 0.2001 0.2647 REMARK 3 20 1.7229 - 1.6938 1.00 2798 162 0.2099 0.2562 REMARK 3 21 1.6938 - 1.6665 1.00 2822 129 0.2100 0.2392 REMARK 3 22 1.6665 - 1.6408 1.00 2832 133 0.2155 0.2907 REMARK 3 23 1.6408 - 1.6167 1.00 2791 145 0.2172 0.2729 REMARK 3 24 1.6167 - 1.5940 1.00 2821 146 0.2203 0.2665 REMARK 3 25 1.5940 - 1.5724 1.00 2809 150 0.2328 0.2843 REMARK 3 26 1.5724 - 1.5520 0.92 2538 144 0.2516 0.3248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4094 REMARK 3 ANGLE : 0.976 5562 REMARK 3 CHIRALITY : 0.060 564 REMARK 3 PLANARITY : 0.006 734 REMARK 3 DIHEDRAL : 13.313 2376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5585 48.5159 78.5176 REMARK 3 T TENSOR REMARK 3 T11: 0.2677 T22: 0.6737 REMARK 3 T33: 0.3990 T12: 0.0843 REMARK 3 T13: -0.1122 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7123 L22: 3.0740 REMARK 3 L33: 5.9061 L12: 1.2664 REMARK 3 L13: 1.6967 L23: 1.8125 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.6812 S13: 0.4472 REMARK 3 S21: -0.3024 S22: -0.4651 S23: 0.5068 REMARK 3 S31: -0.2989 S32: -0.4920 S33: 0.4089 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0025 32.5604 78.9257 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.4326 REMARK 3 T33: 0.1922 T12: -0.0612 REMARK 3 T13: 0.0302 T23: -0.1201 REMARK 3 L TENSOR REMARK 3 L11: 1.7484 L22: 0.9178 REMARK 3 L33: 0.9494 L12: -0.0682 REMARK 3 L13: 0.9992 L23: 0.3506 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.4971 S13: -0.0539 REMARK 3 S21: -0.0036 S22: -0.2385 S23: 0.1349 REMARK 3 S31: 0.2194 S32: -0.3852 S33: 0.1701 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4657 45.1005 82.6271 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.4887 REMARK 3 T33: 0.2382 T12: 0.0393 REMARK 3 T13: -0.0105 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 7.4283 L22: 4.5761 REMARK 3 L33: 7.3552 L12: 3.1283 REMARK 3 L13: 6.5771 L23: 1.1863 REMARK 3 S TENSOR REMARK 3 S11: -0.6535 S12: 0.5034 S13: 0.5035 REMARK 3 S21: -0.1914 S22: 0.1249 S23: -0.0360 REMARK 3 S31: -0.4935 S32: -0.2130 S33: 0.4523 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3686 34.2475 91.9936 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.3938 REMARK 3 T33: 0.2036 T12: -0.0693 REMARK 3 T13: 0.0517 T23: -0.1075 REMARK 3 L TENSOR REMARK 3 L11: 1.0535 L22: 1.0132 REMARK 3 L33: 1.1426 L12: -0.2290 REMARK 3 L13: 0.9532 L23: -0.2319 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.0186 S13: -0.0466 REMARK 3 S21: 0.0717 S22: -0.0359 S23: 0.0939 REMARK 3 S31: 0.2213 S32: -0.4708 S33: 0.0578 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6485 38.4481 86.0219 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.2285 REMARK 3 T33: 0.1126 T12: -0.0035 REMARK 3 T13: -0.0034 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.4416 L22: 1.6449 REMARK 3 L33: 2.6366 L12: 0.5831 REMARK 3 L13: 0.1865 L23: 0.7105 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: 0.3190 S13: 0.1556 REMARK 3 S21: 0.0324 S22: -0.0295 S23: 0.0906 REMARK 3 S31: 0.0796 S32: 0.0948 S33: 0.0541 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9868 31.6665 73.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.5318 REMARK 3 T33: 0.1432 T12: -0.0051 REMARK 3 T13: 0.0102 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 0.8073 L22: 0.7959 REMARK 3 L33: 2.2048 L12: -0.0680 REMARK 3 L13: 0.0785 L23: 1.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.6899 S13: -0.2057 REMARK 3 S21: -0.0786 S22: 0.0109 S23: 0.0787 REMARK 3 S31: 0.1681 S32: 0.2688 S33: 0.0699 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5448 41.6052 50.5256 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0973 REMARK 3 T33: 0.1279 T12: 0.0118 REMARK 3 T13: -0.0390 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.7492 L22: 3.4549 REMARK 3 L33: 2.9612 L12: 0.4938 REMARK 3 L13: -0.6775 L23: -1.1465 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: -0.1752 S13: 0.2030 REMARK 3 S21: 0.1860 S22: -0.1473 S23: -0.0781 REMARK 3 S31: -0.2709 S32: 0.0371 S33: 0.0759 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3366 32.5444 44.8146 REMARK 3 T TENSOR REMARK 3 T11: 0.1032 T22: 0.0922 REMARK 3 T33: 0.1418 T12: 0.0384 REMARK 3 T13: 0.0175 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.8349 L22: 3.2416 REMARK 3 L33: 1.4638 L12: -0.3579 REMARK 3 L13: 0.6142 L23: -0.1833 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: -0.0631 S13: -0.0986 REMARK 3 S21: 0.0302 S22: -0.0297 S23: -0.0879 REMARK 3 S31: 0.2118 S32: 0.3184 S33: 0.0382 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4723 45.0937 43.9139 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1610 REMARK 3 T33: 0.1818 T12: -0.0406 REMARK 3 T13: 0.0303 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 4.5485 L22: 5.2437 REMARK 3 L33: 5.0136 L12: -3.5479 REMARK 3 L13: 4.5004 L23: -2.4340 REMARK 3 S TENSOR REMARK 3 S11: -0.3047 S12: 0.1199 S13: 0.3306 REMARK 3 S21: 0.1081 S22: 0.0345 S23: -0.1213 REMARK 3 S31: -0.4188 S32: 0.3733 S33: 0.2264 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4923 34.5102 34.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1584 REMARK 3 T33: 0.1284 T12: 0.0305 REMARK 3 T13: 0.0381 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.6189 L22: 1.4916 REMARK 3 L33: 2.5620 L12: 1.0036 REMARK 3 L13: 1.0620 L23: 0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.1524 S12: 0.3550 S13: -0.1121 REMARK 3 S21: -0.0684 S22: 0.1432 S23: -0.0819 REMARK 3 S31: 0.0715 S32: 0.2941 S33: 0.0224 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1053 39.1139 40.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.0923 T22: 0.0641 REMARK 3 T33: 0.0933 T12: -0.0026 REMARK 3 T13: -0.0123 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.7328 L22: 1.3716 REMARK 3 L33: 1.4892 L12: -0.3915 REMARK 3 L13: 0.0316 L23: 0.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0141 S13: 0.0928 REMARK 3 S21: -0.0989 S22: 0.0075 S23: 0.0367 REMARK 3 S31: -0.0109 S32: -0.1269 S33: -0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4446 27.6896 50.7318 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.1343 REMARK 3 T33: 0.1393 T12: -0.0015 REMARK 3 T13: -0.0010 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.9414 L22: 3.2403 REMARK 3 L33: 2.8055 L12: 0.1368 REMARK 3 L13: 0.1686 L23: 3.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.2560 S13: -0.1806 REMARK 3 S21: 0.4053 S22: -0.1242 S23: 0.1112 REMARK 3 S31: 0.9043 S32: -0.1464 S33: 0.1179 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1963 35.4059 54.3689 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1859 REMARK 3 T33: 0.1128 T12: 0.0264 REMARK 3 T13: 0.0001 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.9911 L22: 2.4025 REMARK 3 L33: 3.9832 L12: -0.1085 REMARK 3 L13: 0.0021 L23: 1.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.4961 S13: -0.0433 REMARK 3 S21: 0.2820 S22: 0.1379 S23: 0.0466 REMARK 3 S31: 0.1027 S32: -0.4215 S33: -0.0383 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97590 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76116 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 17.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000 , 100 MM TRIS, PH 6.1 - 6.8, 6 MM SAH, AND REMARK 280 10 MM 1,6-DIDEMETHYLTOXOFLAVIN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.42850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.15750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.15750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.42850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.27900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 519 O HOH B 716 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 235 47.93 -148.48 REMARK 500 TRP B 112 44.03 71.40 REMARK 500 ASN B 235 51.32 -153.46 REMARK 500 ASN B 235 51.32 -149.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 745 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 746 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 747 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 748 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 809 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZ8 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZ8 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JE0 A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JE0 B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JE0 GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE0 HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE0 GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE0 HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET AZ8 A 302 12 HET SAH B 301 26 HET AZ8 B 302 12 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM AZ8 PYRIMIDO[5,4-E][1,2,4]TRIAZINE-5,7(6H,8H)-DIONE HETSYN AZ8 1,6-DIDEMETHYLTOXOFLAVIN FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 AZ8 2(C5 H3 N5 O2) FORMUL 7 HOH *757(H2 O) HELIX 1 AA1 ALA A 5 GLY A 11 5 7 HELIX 2 AA2 GLY A 12 ALA A 21 1 10 HELIX 3 AA3 ALA A 21 GLY A 36 1 16 HELIX 4 AA4 GLY A 51 ARG A 60 1 10 HELIX 5 AA5 SER A 71 GLY A 86 1 16 HELIX 6 AA6 ASP A 95 MET A 99 5 5 HELIX 7 AA7 LEU A 113 ALA A 117 5 5 HELIX 8 AA8 SER A 119 SER A 133 1 15 HELIX 9 AA9 SER A 150 GLY A 154 5 5 HELIX 10 AB1 PHE A 156 TYR A 159 5 4 HELIX 11 AB2 SER A 193 ALA A 204 1 12 HELIX 12 AB3 GLU A 217 THR A 223 1 7 HELIX 13 AB4 TRP A 229 ASN A 235 1 7 HELIX 14 AB5 ALA B 5 GLY B 11 5 7 HELIX 15 AB6 GLY B 12 GLN B 19 1 8 HELIX 16 AB7 ALA B 21 GLY B 36 1 16 HELIX 17 AB8 GLY B 51 ARG B 60 1 10 HELIX 18 AB9 SER B 71 GLY B 86 1 16 HELIX 19 AC1 ASP B 95 MET B 99 5 5 HELIX 20 AC2 LEU B 113 ALA B 117 5 5 HELIX 21 AC3 SER B 119 SER B 133 1 15 HELIX 22 AC4 SER B 150 GLY B 154 5 5 HELIX 23 AC5 PHE B 156 TYR B 159 5 4 HELIX 24 AC6 SER B 193 ALA B 204 1 12 HELIX 25 AC7 GLU B 217 THR B 223 1 7 HELIX 26 AC8 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 46 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O PHE A 187 N ALA A 177 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 46 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O VAL B 141 N VAL B 108 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O LEU B 241 N ALA B 142 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N GLN B 212 O GLY B 240 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N ARG B 167 O ARG B 174 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 SER B 185 ARG B 191 -1 O PHE B 187 N ALA B 177 CISPEP 1 ASP A 182 PRO A 183 0 -2.92 CISPEP 2 ASP B 182 PRO B 183 0 -1.04 SITE 1 AC1 23 TYR A 7 PHE A 14 ARG A 24 ALA A 47 SITE 2 AC1 23 CYS A 48 GLY A 49 PHE A 53 ASP A 69 SITE 3 AC1 23 ILE A 70 SER A 71 ARG A 94 ASP A 95 SITE 4 AC1 23 VAL A 96 ALA A 111 TRP A 112 TYR A 116 SITE 5 AC1 23 AZ8 A 302 HOH A 458 HOH A 463 HOH A 469 SITE 6 AC1 23 HOH A 514 HOH A 523 HOH A 526 SITE 1 AC2 10 PHE A 14 GLN A 23 TRP A 112 ASN A 115 SITE 2 AC2 10 TYR A 116 VAL A 161 LEU A 237 SAH A 301 SITE 3 AC2 10 HOH A 468 HOH A 479 SITE 1 AC3 23 TYR B 7 PHE B 14 ARG B 24 ALA B 47 SITE 2 AC3 23 CYS B 48 GLY B 49 PHE B 53 ASP B 69 SITE 3 AC3 23 ILE B 70 SER B 71 ARG B 94 ASP B 95 SITE 4 AC3 23 VAL B 96 ALA B 111 TRP B 112 TYR B 116 SITE 5 AC3 23 MET B 126 AZ8 B 302 HOH B 495 HOH B 500 SITE 6 AC3 23 HOH B 522 HOH B 559 HOH B 564 SITE 1 AC4 11 PHE B 14 PHE B 17 GLN B 23 TRP B 112 SITE 2 AC4 11 ASN B 115 TYR B 116 VAL B 161 LEU B 237 SITE 3 AC4 11 SAH B 301 HOH B 434 HOH B 466 CRYST1 46.857 78.558 144.315 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006929 0.00000