HEADER TRANSFERASE 17-APR-16 5JE1 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) AND TOXOFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), PRODUCT COMPLEX, KEYWDS 2 TOXIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JE1 1 REMARK REVDAT 5 06-MAR-24 5JE1 1 REMARK REVDAT 4 04-DEC-19 5JE1 1 REMARK REVDAT 3 20-SEP-17 5JE1 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JE1 1 JRNL REVDAT 1 04-MAY-16 5JE1 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 32310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8068 - 4.4591 0.93 2583 140 0.1283 0.1560 REMARK 3 2 4.4591 - 3.5401 0.95 2543 152 0.1060 0.1651 REMARK 3 3 3.5401 - 3.0928 0.96 2586 149 0.1282 0.1872 REMARK 3 4 3.0928 - 2.8101 0.97 2584 145 0.1415 0.2182 REMARK 3 5 2.8101 - 2.6087 0.98 2650 110 0.1505 0.2123 REMARK 3 6 2.6087 - 2.4550 0.98 2650 122 0.1560 0.2563 REMARK 3 7 2.4550 - 2.3320 0.99 2639 117 0.1533 0.2315 REMARK 3 8 2.3320 - 2.2305 0.99 2624 144 0.1664 0.2033 REMARK 3 9 2.2305 - 2.1447 0.99 2620 143 0.1672 0.2365 REMARK 3 10 2.1447 - 2.0707 0.99 2638 127 0.1769 0.2466 REMARK 3 11 2.0707 - 2.0059 0.93 2481 145 0.1942 0.2485 REMARK 3 12 2.0059 - 1.9486 0.79 2093 125 0.2178 0.3071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4084 REMARK 3 ANGLE : 0.858 5544 REMARK 3 CHIRALITY : 0.053 565 REMARK 3 PLANARITY : 0.005 726 REMARK 3 DIHEDRAL : 13.215 2360 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4653 20.5106 35.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.1116 REMARK 3 T33: 0.0935 T12: -0.0054 REMARK 3 T13: 0.0493 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.4567 L22: 4.0301 REMARK 3 L33: 7.7476 L12: 1.3054 REMARK 3 L13: 5.4803 L23: 1.5564 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.2876 S13: 0.0269 REMARK 3 S21: -0.4066 S22: 0.0886 S23: -0.0410 REMARK 3 S31: 0.3059 S32: 0.1755 S33: -0.0787 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3097 14.0240 51.0779 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.0673 REMARK 3 T33: 0.0909 T12: 0.0034 REMARK 3 T13: 0.0091 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.5602 L22: 1.5691 REMARK 3 L33: 1.5622 L12: 0.2273 REMARK 3 L13: 0.8302 L23: 1.3916 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: -0.1734 S13: -0.1430 REMARK 3 S21: 0.0245 S22: 0.0250 S23: -0.0273 REMARK 3 S31: 0.1016 S32: 0.0170 S33: -0.0114 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3003 8.0063 45.1737 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0552 REMARK 3 T33: 0.1056 T12: 0.0004 REMARK 3 T13: 0.0045 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.3018 L22: 2.6110 REMARK 3 L33: 5.2894 L12: -0.1901 REMARK 3 L13: 1.2573 L23: -1.5839 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: -0.0434 S13: -0.2030 REMARK 3 S21: 0.0540 S22: 0.1692 S23: 0.0977 REMARK 3 S31: 0.1846 S32: 0.0194 S33: -0.2189 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4121 7.7714 34.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.1173 REMARK 3 T33: 0.1123 T12: 0.0218 REMARK 3 T13: 0.0579 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 5.1319 L22: 7.0805 REMARK 3 L33: 6.1093 L12: -2.3087 REMARK 3 L13: 0.9155 L23: -3.7594 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.3804 S13: -0.2138 REMARK 3 S21: -0.4854 S22: -0.3251 S23: -0.5226 REMARK 3 S31: 0.3910 S32: 0.5075 S33: 0.2338 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1684 9.9322 39.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.0925 REMARK 3 T33: 0.1625 T12: -0.0310 REMARK 3 T13: -0.0501 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.6481 L22: 1.4674 REMARK 3 L33: 2.8415 L12: 0.0610 REMARK 3 L13: 0.3073 L23: -0.7273 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.1191 S13: -0.1207 REMARK 3 S21: -0.0910 S22: 0.0001 S23: 0.3412 REMARK 3 S31: 0.1033 S32: -0.2584 S33: -0.0263 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6965 28.1598 44.9092 REMARK 3 T TENSOR REMARK 3 T11: 0.0875 T22: 0.0789 REMARK 3 T33: 0.0554 T12: 0.0234 REMARK 3 T13: -0.0225 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.3757 L22: 2.1019 REMARK 3 L33: 1.3515 L12: 0.5757 REMARK 3 L13: -0.2470 L23: -0.1621 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.0626 S13: 0.1360 REMARK 3 S21: -0.0711 S22: -0.0047 S23: 0.1206 REMARK 3 S31: -0.1549 S32: -0.1234 S33: 0.0129 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2269 25.9934 57.1458 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.0889 REMARK 3 T33: 0.0739 T12: 0.0516 REMARK 3 T13: -0.0078 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 5.3831 L22: 1.6489 REMARK 3 L33: 1.8325 L12: 0.2529 REMARK 3 L13: 1.6560 L23: 0.2107 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: -0.3076 S13: -0.0139 REMARK 3 S21: 0.1826 S22: 0.0219 S23: 0.0177 REMARK 3 S31: -0.0353 S32: -0.0801 S33: 0.0720 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.0291 19.0932 56.2782 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.2454 REMARK 3 T33: 0.1519 T12: 0.0081 REMARK 3 T13: 0.0379 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 3.2972 L22: 6.2229 REMARK 3 L33: 8.5932 L12: 1.4027 REMARK 3 L13: 4.9381 L23: 0.9336 REMARK 3 S TENSOR REMARK 3 S11: -0.1709 S12: 0.6168 S13: 0.6759 REMARK 3 S21: -0.4143 S22: -0.0005 S23: -0.3037 REMARK 3 S31: -0.5408 S32: 0.5927 S33: 0.1949 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.1612 14.0040 64.8047 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.1202 REMARK 3 T33: 0.1408 T12: 0.0136 REMARK 3 T13: -0.0323 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.3113 L22: 3.7717 REMARK 3 L33: 5.7407 L12: 1.4162 REMARK 3 L13: 1.4817 L23: -0.9344 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: 0.1027 S13: -0.1060 REMARK 3 S21: -0.2724 S22: 0.1598 S23: -0.0688 REMARK 3 S31: 0.2321 S32: 0.0107 S33: -0.0731 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.6207 24.0905 71.6634 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0875 REMARK 3 T33: 0.1473 T12: 0.0142 REMARK 3 T13: -0.0311 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 3.0997 L22: 2.5622 REMARK 3 L33: 2.8658 L12: -1.4529 REMARK 3 L13: -1.2259 L23: 0.3455 REMARK 3 S TENSOR REMARK 3 S11: -0.1808 S12: -0.0984 S13: 0.2999 REMARK 3 S21: -0.0070 S22: 0.0979 S23: 0.1721 REMARK 3 S31: -0.0804 S32: -0.1872 S33: 0.0518 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.1703 30.3590 62.7139 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.1455 REMARK 3 T33: 0.2769 T12: 0.0182 REMARK 3 T13: 0.0014 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 6.0501 L22: 8.3436 REMARK 3 L33: 4.5008 L12: -6.7168 REMARK 3 L13: -0.2857 L23: 0.6301 REMARK 3 S TENSOR REMARK 3 S11: 0.3863 S12: 0.7832 S13: 0.5575 REMARK 3 S21: -0.9283 S22: -0.1962 S23: 0.0082 REMARK 3 S31: -0.4891 S32: -0.2915 S33: -0.0815 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.5075 9.5276 68.2551 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0953 REMARK 3 T33: 0.0754 T12: 0.0070 REMARK 3 T13: -0.0087 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.7132 L22: 1.5062 REMARK 3 L33: 1.3077 L12: -0.4024 REMARK 3 L13: 0.4107 L23: 0.1387 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: 0.1307 S13: -0.0524 REMARK 3 S21: -0.0591 S22: -0.0266 S23: -0.0860 REMARK 3 S31: -0.0639 S32: 0.0719 S33: -0.0534 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.1345 5.5954 64.5472 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.1201 REMARK 3 T33: 0.1581 T12: 0.0000 REMARK 3 T13: -0.0245 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.1982 L22: 1.1023 REMARK 3 L33: 4.3114 L12: -0.0065 REMARK 3 L13: 2.4819 L23: 0.0774 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: -0.0603 S13: -0.1515 REMARK 3 S21: -0.0802 S22: -0.0310 S23: 0.2647 REMARK 3 S31: -0.0892 S32: -0.2592 S33: -0.0614 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA WITH BOUND SAH AND 1,6 REMARK 200 -DIDEMETHYLTOXOFLAVIN REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, 6 MM SAH, AND REMARK 280 1 MM TOXOFLAVIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.78350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 4 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 83 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 63 -77.94 -83.90 REMARK 500 ASN A 235 53.59 -149.93 REMARK 500 ASN B 235 53.74 -147.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 684 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 686 DISTANCE = 7.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOF A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOF B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JE1 A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JE1 B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JE1 GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE1 HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE1 GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE1 HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET TOF A 302 14 HET SAH B 301 26 HET TOF B 302 14 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM TOF 1,6-DIMETHYLPYRIMIDO[5,4-E][1,2,4]TRIAZINE-5,7(1H,6H)- HETNAM 2 TOF DIONE HETSYN TOF TOXOFLAVIN FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 TOF 2(C7 H7 N5 O2) FORMUL 7 HOH *645(H2 O) HELIX 1 AA1 ALA A 5 ILE A 10 5 6 HELIX 2 AA2 GLY A 11 ALA A 21 1 11 HELIX 3 AA3 ALA A 22 GLY A 36 1 15 HELIX 4 AA4 GLY A 51 ARG A 60 1 10 HELIX 5 AA5 SER A 71 GLY A 86 1 16 HELIX 6 AA6 LEU A 113 ALA A 117 5 5 HELIX 7 AA7 SER A 119 ALA A 132 1 14 HELIX 8 AA8 SER A 150 GLY A 154 5 5 HELIX 9 AA9 PHE A 156 TYR A 159 5 4 HELIX 10 AB1 SER A 193 ALA A 204 1 12 HELIX 11 AB2 GLU A 217 THR A 223 1 7 HELIX 12 AB3 TRP A 229 ASN A 235 1 7 HELIX 13 AB4 ALA B 5 SER B 9 5 5 HELIX 14 AB5 ILE B 10 GLY B 11 5 2 HELIX 15 AB6 GLY B 12 ALA B 21 1 10 HELIX 16 AB7 ALA B 22 GLY B 36 1 15 HELIX 17 AB8 GLY B 51 ARG B 60 1 10 HELIX 18 AB9 SER B 71 GLY B 86 1 16 HELIX 19 AC1 ASP B 95 MET B 99 5 5 HELIX 20 AC2 LEU B 113 ALA B 117 5 5 HELIX 21 AC3 SER B 119 ALA B 132 1 14 HELIX 22 AC4 SER B 150 GLY B 154 5 5 HELIX 23 AC5 PHE B 156 TYR B 159 5 4 HELIX 24 AC6 SER B 193 ALA B 204 1 12 HELIX 25 AC7 GLU B 217 THR B 223 1 7 HELIX 26 AC8 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 VAL A 65 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 VAL A 43 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 46 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O ARG A 191 N TYR A 173 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 46 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O LYS B 135 N PHE B 105 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O LEU B 241 N ALA B 142 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N HIS B 208 O LYS B 244 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N ARG B 167 O ARG B 174 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 SER B 185 ARG B 191 -1 O ARG B 191 N TYR B 173 CISPEP 1 ASP A 182 PRO A 183 0 -6.38 CISPEP 2 ASP B 182 PRO B 183 0 -1.69 SITE 1 AC1 23 TYR A 7 PHE A 14 ARG A 24 ALA A 47 SITE 2 AC1 23 CYS A 48 GLY A 49 PHE A 53 ASP A 69 SITE 3 AC1 23 ILE A 70 SER A 71 MET A 74 ARG A 94 SITE 4 AC1 23 ASP A 95 VAL A 96 ALA A 111 TRP A 112 SITE 5 AC1 23 TYR A 116 TOF A 302 HOH A 430 HOH A 467 SITE 6 AC1 23 HOH A 507 HOH A 540 HOH A 564 SITE 1 AC2 14 TYR A 7 PHE A 14 PHE A 17 GLN A 23 SITE 2 AC2 14 GLU A 27 TRP A 112 ASN A 115 TYR A 116 SITE 3 AC2 14 VAL A 161 PHE A 187 PHE A 189 LEU A 237 SITE 4 AC2 14 SAH A 301 HOH A 429 SITE 1 AC3 22 TYR B 7 PHE B 14 ARG B 24 ALA B 47 SITE 2 AC3 22 CYS B 48 GLY B 49 PHE B 53 ASP B 69 SITE 3 AC3 22 ILE B 70 SER B 71 ARG B 94 ASP B 95 SITE 4 AC3 22 VAL B 96 ALA B 111 TRP B 112 TYR B 116 SITE 5 AC3 22 MET B 126 TOF B 302 HOH B 513 HOH B 538 SITE 6 AC3 22 HOH B 545 HOH B 551 SITE 1 AC4 14 TYR B 7 PHE B 14 PHE B 17 GLN B 23 SITE 2 AC4 14 GLU B 27 TRP B 112 ASN B 115 TYR B 116 SITE 3 AC4 14 VAL B 161 PHE B 187 PHE B 189 LEU B 237 SITE 4 AC4 14 SAH B 301 HOH B 518 CRYST1 68.699 45.567 74.907 90.00 98.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014556 0.000000 0.002300 0.00000 SCALE2 0.000000 0.021946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013516 0.00000