HEADER TRANSFERASE 17-APR-16 5JE2 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA Y7F MUTANT WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), MUTANT, PRODUCT KEYWDS 2 COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JE2 1 REMARK REVDAT 5 06-MAR-24 5JE2 1 REMARK REVDAT 4 04-DEC-19 5JE2 1 REMARK REVDAT 3 20-SEP-17 5JE2 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JE2 1 JRNL REVDAT 1 11-MAY-16 5JE2 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 73355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1282 - 4.4941 0.98 2747 130 0.1281 0.1215 REMARK 3 2 4.4941 - 3.5692 0.99 2727 145 0.1078 0.1343 REMARK 3 3 3.5692 - 3.1186 0.99 2702 135 0.1233 0.1468 REMARK 3 4 3.1186 - 2.8337 0.99 2698 134 0.1363 0.1499 REMARK 3 5 2.8337 - 2.6308 1.00 2691 153 0.1371 0.1759 REMARK 3 6 2.6308 - 2.4757 1.00 2695 167 0.1378 0.1886 REMARK 3 7 2.4757 - 2.3518 1.00 2701 136 0.1351 0.1586 REMARK 3 8 2.3518 - 2.2495 1.00 2715 118 0.1305 0.1678 REMARK 3 9 2.2495 - 2.1629 1.00 2684 154 0.1246 0.1358 REMARK 3 10 2.1629 - 2.0883 1.00 2711 158 0.1256 0.1521 REMARK 3 11 2.0883 - 2.0230 1.00 2693 139 0.1299 0.1512 REMARK 3 12 2.0230 - 1.9652 1.00 2715 135 0.1293 0.1465 REMARK 3 13 1.9652 - 1.9135 1.00 2697 134 0.1288 0.1501 REMARK 3 14 1.9135 - 1.8668 1.00 2684 131 0.1360 0.1573 REMARK 3 15 1.8668 - 1.8244 1.00 2706 163 0.1323 0.1794 REMARK 3 16 1.8244 - 1.7855 1.00 2653 151 0.1332 0.1681 REMARK 3 17 1.7855 - 1.7498 1.00 2723 139 0.1321 0.1461 REMARK 3 18 1.7498 - 1.7168 1.00 2671 144 0.1268 0.1589 REMARK 3 19 1.7168 - 1.6862 1.00 2699 156 0.1245 0.1627 REMARK 3 20 1.6862 - 1.6576 1.00 2706 125 0.1233 0.1283 REMARK 3 21 1.6576 - 1.6308 1.00 2724 136 0.1206 0.1600 REMARK 3 22 1.6308 - 1.6058 1.00 2665 123 0.1207 0.1683 REMARK 3 23 1.6058 - 1.5821 1.00 2709 121 0.1182 0.1409 REMARK 3 24 1.5821 - 1.5599 1.00 2694 129 0.1221 0.1636 REMARK 3 25 1.5599 - 1.5388 0.95 2575 133 0.1329 0.1796 REMARK 3 26 1.5388 - 1.5188 0.87 2360 121 0.1452 0.1858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4315 REMARK 3 ANGLE : 1.017 5867 REMARK 3 CHIRALITY : 0.061 588 REMARK 3 PLANARITY : 0.007 788 REMARK 3 DIHEDRAL : 13.973 2549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6750 18.4563 12.0028 REMARK 3 T TENSOR REMARK 3 T11: 0.0085 T22: 0.0486 REMARK 3 T33: 0.0466 T12: -0.0074 REMARK 3 T13: -0.0014 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.4590 L22: 0.9984 REMARK 3 L33: 1.6221 L12: -0.3946 REMARK 3 L13: -0.0583 L23: -0.1913 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.0410 S13: -0.0191 REMARK 3 S21: -0.0284 S22: -0.0063 S23: -0.0439 REMARK 3 S31: -0.0575 S32: 0.0477 S33: -0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2914 9.4163 14.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0424 REMARK 3 T33: 0.0399 T12: 0.0072 REMARK 3 T13: -0.0057 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.4098 L22: 1.5250 REMARK 3 L33: 1.2023 L12: 0.3452 REMARK 3 L13: 0.1997 L23: 0.3279 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0152 S13: -0.1363 REMARK 3 S21: 0.0084 S22: 0.0254 S23: -0.0860 REMARK 3 S31: 0.0185 S32: 0.0825 S33: -0.0164 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0420 15.4117 20.5855 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0296 REMARK 3 T33: 0.0351 T12: 0.0034 REMARK 3 T13: 0.0081 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.2808 L22: 0.5805 REMARK 3 L33: 1.6208 L12: -0.0761 REMARK 3 L13: 0.5547 L23: -0.0129 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: -0.0226 S13: -0.0890 REMARK 3 S21: 0.0384 S22: -0.0254 S23: 0.0288 REMARK 3 S31: 0.0392 S32: 0.0063 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2243 23.7678 11.8456 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: 0.0389 REMARK 3 T33: 0.0399 T12: 0.0169 REMARK 3 T13: -0.0047 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.7997 L22: 0.6728 REMARK 3 L33: 1.1110 L12: 0.1747 REMARK 3 L13: -0.4111 L23: -0.4295 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0430 S13: -0.0093 REMARK 3 S21: 0.0218 S22: -0.0062 S23: 0.0251 REMARK 3 S31: -0.0364 S32: -0.0025 S33: 0.0106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5899 51.6787 22.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0418 REMARK 3 T33: 0.0422 T12: -0.0028 REMARK 3 T13: 0.0110 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.7368 L22: 1.1531 REMARK 3 L33: 1.3588 L12: -0.2313 REMARK 3 L13: 0.2517 L23: 0.0575 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.0369 S13: 0.0575 REMARK 3 S21: -0.0742 S22: -0.0087 S23: -0.0563 REMARK 3 S31: -0.0910 S32: 0.0457 S33: 0.0064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2352 46.1912 18.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0327 REMARK 3 T33: 0.0322 T12: 0.0030 REMARK 3 T13: 0.0059 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.0720 L22: 1.1851 REMARK 3 L33: 1.8650 L12: -0.0314 REMARK 3 L13: 0.3716 L23: -0.3403 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0944 S13: 0.0347 REMARK 3 S21: -0.0414 S22: -0.0145 S23: -0.0436 REMARK 3 S31: -0.0586 S32: 0.1604 S33: -0.0016 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9069 38.6387 22.8448 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0332 REMARK 3 T33: 0.0392 T12: -0.0015 REMARK 3 T13: -0.0087 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1013 L22: 0.6280 REMARK 3 L33: 0.6354 L12: 0.0855 REMARK 3 L13: -0.5101 L23: -0.0639 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0665 S13: -0.1122 REMARK 3 S21: -0.0020 S22: -0.0129 S23: 0.0490 REMARK 3 S31: 0.0524 S32: -0.0441 S33: 0.0259 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4117 54.7258 27.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.0369 T22: 0.0337 REMARK 3 T33: 0.0329 T12: 0.0027 REMARK 3 T13: 0.0015 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5425 L22: 1.0343 REMARK 3 L33: 0.4975 L12: 0.0681 REMARK 3 L13: -0.0317 L23: 0.0863 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.0258 S13: 0.0468 REMARK 3 S21: -0.0459 S22: 0.0012 S23: 0.0315 REMARK 3 S31: -0.0369 S32: -0.0349 S33: 0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.519 REMARK 200 RESOLUTION RANGE LOW (A) : 29.123 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.10900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA REMARK 200 REMARK 200 REMARK: ROD/NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, AND 6 MM SAH, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.48700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 704 O HOH A 787 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 649 O HOH B 818 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 235 50.14 -145.54 REMARK 500 TRP B 112 49.55 72.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 878 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 895 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 896 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 897 DISTANCE = 6.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JE2 A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JE2 B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JE2 GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE2 HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE2 PHE A 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQADV 5JE2 GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE2 HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE2 PHE B 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG PHE ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG PHE ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET DMS A 302 4 HET DMS A 303 4 HET PG4 A 304 13 HET SAH B 301 26 HET DMS B 302 4 HET TRS B 303 8 HET PG4 B 304 13 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 DMS 3(C2 H6 O S) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 11 HOH *976(H2 O) HELIX 1 AA1 ALA A 5 GLY A 11 5 7 HELIX 2 AA2 GLY A 12 ALA A 21 1 10 HELIX 3 AA3 ALA A 22 GLY A 36 1 15 HELIX 4 AA4 GLY A 51 ARG A 60 1 10 HELIX 5 AA5 SER A 71 TYR A 85 1 15 HELIX 6 AA6 ASP A 95 MET A 99 5 5 HELIX 7 AA7 LEU A 113 ALA A 117 5 5 HELIX 8 AA8 SER A 119 SER A 133 1 15 HELIX 9 AA9 SER A 150 GLY A 154 5 5 HELIX 10 AB1 PHE A 156 TYR A 159 5 4 HELIX 11 AB2 SER A 193 ALA A 204 1 12 HELIX 12 AB3 GLU A 217 THR A 223 1 7 HELIX 13 AB4 TRP A 229 ASN A 235 1 7 HELIX 14 AB5 ALA B 5 GLY B 11 5 7 HELIX 15 AB6 GLY B 12 ALA B 21 1 10 HELIX 16 AB7 ALA B 22 GLY B 36 1 15 HELIX 17 AB8 GLY B 51 ARG B 60 1 10 HELIX 18 AB9 SER B 71 TYR B 85 1 15 HELIX 19 AC1 LEU B 113 ALA B 117 5 5 HELIX 20 AC2 SER B 119 ALA B 132 1 14 HELIX 21 AC3 SER B 150 GLY B 154 5 5 HELIX 22 AC4 PHE B 156 TYR B 159 5 4 HELIX 23 AC5 SER B 193 ALA B 204 1 12 HELIX 24 AC6 GLU B 217 THR B 223 1 7 HELIX 25 AC7 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 46 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O ARG A 191 N TYR A 173 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 46 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O VAL B 141 N VAL B 108 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O LEU B 241 N ALA B 142 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N GLN B 212 O GLY B 240 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N ARG B 167 O ARG B 174 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 SER B 185 ARG B 191 -1 O ARG B 191 N TYR B 173 CISPEP 1 ASP A 182 PRO A 183 0 -0.43 CISPEP 2 ASP B 182 PRO B 183 0 -0.37 SITE 1 AC1 23 PHE A 7 PHE A 14 ARG A 24 ALA A 47 SITE 2 AC1 23 CYS A 48 GLY A 49 PHE A 53 ASP A 69 SITE 3 AC1 23 ILE A 70 SER A 71 MET A 74 ARG A 94 SITE 4 AC1 23 ASP A 95 VAL A 96 ALA A 111 TRP A 112 SITE 5 AC1 23 TYR A 116 MET A 126 HOH A 491 HOH A 515 SITE 6 AC1 23 HOH A 574 HOH A 598 HOH A 617 SITE 1 AC2 4 GLN A 23 TRP A 112 VAL A 161 HOH A 504 SITE 1 AC3 6 LEU A 216 ILE A 221 HOH A 419 HOH A 463 SITE 2 AC3 6 HOH A 476 ARG B 83 SITE 1 AC4 6 GLN A 19 SER A 20 VAL A 180 HOH A 417 SITE 2 AC4 6 HOH A 441 HOH A 546 SITE 1 AC5 23 PHE B 7 PHE B 14 ARG B 24 ALA B 47 SITE 2 AC5 23 CYS B 48 GLY B 49 PHE B 53 ASP B 69 SITE 3 AC5 23 ILE B 70 SER B 71 MET B 74 ARG B 94 SITE 4 AC5 23 ASP B 95 VAL B 96 ALA B 111 TRP B 112 SITE 5 AC5 23 TYR B 116 MET B 126 HOH B 480 HOH B 503 SITE 6 AC5 23 HOH B 561 HOH B 615 HOH B 641 SITE 1 AC6 5 GLN B 23 TRP B 112 VAL B 161 HOH B 567 SITE 2 AC6 5 HOH B 728 SITE 1 AC7 12 GLN B 233 ASN B 234 ASN B 235 CYS B 236 SITE 2 AC7 12 HOH B 444 HOH B 453 HOH B 479 HOH B 482 SITE 3 AC7 12 HOH B 515 HOH B 566 HOH B 617 HOH B 634 SITE 1 AC8 6 ASN B 165 GLU B 166 ASP B 176 HOH B 559 SITE 2 AC8 6 HOH B 681 HOH B 692 CRYST1 44.936 70.974 77.754 90.00 100.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022254 0.000000 0.004133 0.00000 SCALE2 0.000000 0.014090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013081 0.00000