HEADER TRANSFERASE 17-APR-16 5JE5 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) AND 1-DEMETHYLTOXOFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), PRODUCT, COMPLEX, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JE5 1 REMARK REVDAT 5 06-MAR-24 5JE5 1 REMARK REVDAT 4 04-DEC-19 5JE5 1 REMARK REVDAT 3 20-SEP-17 5JE5 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JE5 1 JRNL REVDAT 1 04-MAY-16 5JE5 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 31048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.5682 - 3.4721 0.94 2552 139 0.1267 0.1339 REMARK 3 2 3.4721 - 2.7588 0.99 2761 94 0.1363 0.1562 REMARK 3 3 2.7588 - 2.4109 1.00 2697 148 0.1439 0.1786 REMARK 3 4 2.4109 - 2.1909 0.99 2694 131 0.1459 0.1867 REMARK 3 5 2.1909 - 2.0341 1.00 2729 156 0.1448 0.1566 REMARK 3 6 2.0341 - 1.9143 0.99 2687 147 0.1591 0.1976 REMARK 3 7 1.9143 - 1.8185 0.99 2697 129 0.1602 0.2076 REMARK 3 8 1.8185 - 1.7394 1.00 2697 180 0.1632 0.1954 REMARK 3 9 1.7394 - 1.6725 1.00 2712 134 0.1671 0.1914 REMARK 3 10 1.6725 - 1.6148 0.99 2698 142 0.1729 0.2392 REMARK 3 11 1.6148 - 1.5643 0.96 2609 115 0.1786 0.2174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2165 REMARK 3 ANGLE : 1.097 2953 REMARK 3 CHIRALITY : 0.066 295 REMARK 3 PLANARITY : 0.007 397 REMARK 3 DIHEDRAL : 15.200 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4877 8.0006 12.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.1417 REMARK 3 T33: 0.1841 T12: 0.0270 REMARK 3 T13: -0.0673 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 6.2377 L22: 4.1828 REMARK 3 L33: 9.3110 L12: 0.5830 REMARK 3 L13: -5.6705 L23: -1.5965 REMARK 3 S TENSOR REMARK 3 S11: 0.1668 S12: 0.1812 S13: -0.1692 REMARK 3 S21: -0.3422 S22: 0.0015 S23: 0.2449 REMARK 3 S31: 0.0734 S32: -0.2749 S33: -0.1622 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6951 13.3672 28.4624 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1301 REMARK 3 T33: 0.1018 T12: 0.0090 REMARK 3 T13: 0.0309 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 7.2178 L22: 6.4341 REMARK 3 L33: 2.4146 L12: 5.7316 REMARK 3 L13: 0.5048 L23: 0.2923 REMARK 3 S TENSOR REMARK 3 S11: 0.2701 S12: -0.2105 S13: 0.0180 REMARK 3 S21: 0.4209 S22: -0.1176 S23: 0.0593 REMARK 3 S31: -0.2191 S32: -0.0436 S33: -0.1565 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2968 23.9406 19.6179 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.0988 REMARK 3 T33: 0.1629 T12: 0.0284 REMARK 3 T13: 0.0604 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.0399 L22: 4.6994 REMARK 3 L33: 2.7612 L12: -1.0437 REMARK 3 L13: 0.3728 L23: 1.6190 REMARK 3 S TENSOR REMARK 3 S11: 0.1070 S12: -0.1125 S13: 0.1775 REMARK 3 S21: 0.1204 S22: 0.0455 S23: 0.1186 REMARK 3 S31: -0.3454 S32: -0.1574 S33: -0.1333 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7290 19.1825 9.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1676 REMARK 3 T33: 0.2406 T12: 0.0351 REMARK 3 T13: -0.0223 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 7.4706 L22: 9.1382 REMARK 3 L33: 7.7403 L12: -6.1517 REMARK 3 L13: -2.6967 L23: 6.4351 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: 0.5068 S13: -0.2603 REMARK 3 S21: -0.0703 S22: -0.3590 S23: 0.8715 REMARK 3 S31: 0.0010 S32: -0.5503 S33: 0.2120 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7517 20.4864 13.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.1663 T22: 0.1671 REMARK 3 T33: 0.1472 T12: -0.0175 REMARK 3 T13: 0.0506 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.9298 L22: 1.8650 REMARK 3 L33: 1.5398 L12: -0.5587 REMARK 3 L13: 0.1366 L23: -0.3484 REMARK 3 S TENSOR REMARK 3 S11: 0.1776 S12: 0.2202 S13: 0.2716 REMARK 3 S21: -0.1739 S22: -0.1509 S23: -0.2202 REMARK 3 S31: -0.2491 S32: 0.2917 S33: -0.0299 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7223 4.4758 18.7279 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.1295 REMARK 3 T33: 0.0772 T12: 0.0229 REMARK 3 T13: -0.0135 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.2322 L22: 2.3133 REMARK 3 L33: 1.8169 L12: 0.3733 REMARK 3 L13: -0.1485 L23: -0.4776 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 0.0391 S13: -0.0592 REMARK 3 S21: -0.0924 S22: -0.0570 S23: -0.0847 REMARK 3 S31: 0.1515 S32: 0.1794 S33: 0.0015 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4142 12.3941 31.8699 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.2325 REMARK 3 T33: 0.1406 T12: -0.0785 REMARK 3 T13: -0.0201 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 7.4979 L22: 8.7160 REMARK 3 L33: 3.2555 L12: 7.5587 REMARK 3 L13: -4.4905 L23: -5.1352 REMARK 3 S TENSOR REMARK 3 S11: 0.4254 S12: -0.3532 S13: 0.4694 REMARK 3 S21: 0.6891 S22: -0.2040 S23: 0.2074 REMARK 3 S31: -0.5252 S32: 0.1409 S33: -0.2292 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6834 4.6462 30.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1396 REMARK 3 T33: 0.0724 T12: 0.0064 REMARK 3 T13: -0.0095 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.6945 L22: 4.3518 REMARK 3 L33: 3.0323 L12: 3.1723 REMARK 3 L13: -1.3018 L23: -2.6097 REMARK 3 S TENSOR REMARK 3 S11: 0.1059 S12: -0.2322 S13: 0.1359 REMARK 3 S21: 0.1387 S22: -0.0050 S23: 0.1507 REMARK 3 S31: -0.0350 S32: 0.0084 S33: -0.0785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SURFACE RESIDUE CYS236 SHOWS RESIDUAL REMARK 3 ELECTRON DENSITY NEAR THE SULFUR ATOM AND IS POSSIBLY PARTIALLY REMARK 3 OXIDIZED. REMARK 4 REMARK 4 5JE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97670 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 18.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.16900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX, PHASER REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA WITH BOUND SAH AND 1,6 REMARK 200 -DIDEMETHYLTOXOFLAVIN REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, 6 MM SAH, AND REMARK 280 2 MM 1-DEMETHYLTOXOFLAVIN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.15000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.07500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 63 OH TYR A 173 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZ9 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE4 RELATED DB: PDB DBREF 5JE5 A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JE5 GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE5 HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG TYR ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET AZ9 A 302 13 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM AZ9 6-METHYLPYRIMIDO[5,4-E][1,2,4]TRIAZINE-5,7(6H,8H)-DIONE HETSYN AZ9 1-DEMETHYLTOXOFLAVIN FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 AZ9 C6 H5 N5 O2 FORMUL 4 HOH *337(H2 O) HELIX 1 AA1 ALA A 5 ILE A 10 5 6 HELIX 2 AA2 GLY A 11 ALA A 21 1 11 HELIX 3 AA3 ALA A 22 GLY A 36 1 15 HELIX 4 AA4 GLY A 51 ARG A 60 1 10 HELIX 5 AA5 SER A 71 GLY A 86 1 16 HELIX 6 AA6 ASP A 95 MET A 99 5 5 HELIX 7 AA7 LEU A 113 ALA A 117 5 5 HELIX 8 AA8 SER A 119 SER A 133 1 15 HELIX 9 AA9 SER A 150 GLY A 154 5 5 HELIX 10 AB1 PHE A 156 TYR A 159 5 4 HELIX 11 AB2 SER A 193 ALA A 204 1 12 HELIX 12 AB3 GLU A 217 THR A 223 1 7 HELIX 13 AB4 TRP A 229 ASN A 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 46 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O LEU A 241 N ALA A 142 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O PHE A 189 N HIS A 175 CISPEP 1 ASP A 182 PRO A 183 0 1.60 CISPEP 2 ASP A 182 PRO A 183 0 -4.09 SITE 1 AC1 24 TYR A 7 PHE A 14 ARG A 24 ALA A 47 SITE 2 AC1 24 CYS A 48 GLY A 49 PHE A 53 ASP A 69 SITE 3 AC1 24 ILE A 70 SER A 71 ARG A 94 ASP A 95 SITE 4 AC1 24 VAL A 96 ALA A 111 TRP A 112 TYR A 116 SITE 5 AC1 24 MET A 126 AZ9 A 302 HOH A 476 HOH A 504 SITE 6 AC1 24 HOH A 510 HOH A 521 HOH A 557 HOH A 601 SITE 1 AC2 13 TYR A 7 PHE A 14 GLN A 23 TRP A 112 SITE 2 AC2 13 ASN A 115 TYR A 116 PHE A 179 PHE A 187 SITE 3 AC2 13 LEU A 237 GLN A 238 SAH A 301 HOH A 402 SITE 4 AC2 13 HOH A 438 CRYST1 45.539 45.539 96.225 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021959 0.012678 0.000000 0.00000 SCALE2 0.000000 0.025356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010392 0.00000