HEADER IMMUNE SYSTEM 18-APR-16 5JEK TITLE PHOSPHORYLATED MAVS IN COMPLEX WITH IRF-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 189-427; COMPND 5 SYNONYM: IRF-3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MAVS PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SER-GLY-CYS-PHE-GLU-ASP-LEU-ALA-ILE-SEP-ALA-SER-THR- COMPND 12 SER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INNATE IMMUNITY, SIGNALING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,P.LI REVDAT 2 29-JUN-16 5JEK 1 JRNL REVDAT 1 15-JUN-16 5JEK 0 JRNL AUTH B.ZHAO,C.SHU,X.GAO,B.SANKARAN,F.DU,C.L.SHELTON,A.B.HERR, JRNL AUTH 2 J.Y.JI,P.LI JRNL TITL STRUCTURAL BASIS FOR CONCERTED RECRUITMENT AND ACTIVATION OF JRNL TITL 2 IRF-3 BY INNATE IMMUNE ADAPTOR PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E3403 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27302953 JRNL DOI 10.1073/PNAS.1603269113 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.6833 - 5.7830 1.00 1315 149 0.1527 0.2171 REMARK 3 2 5.7830 - 4.5906 1.00 1289 145 0.1542 0.2129 REMARK 3 3 4.5906 - 4.0104 1.00 1284 143 0.1530 0.2049 REMARK 3 4 4.0104 - 3.6438 1.00 1297 137 0.1652 0.2162 REMARK 3 5 3.6438 - 3.3826 1.00 1284 140 0.1879 0.2446 REMARK 3 6 3.3826 - 3.1832 1.00 1260 140 0.2023 0.2378 REMARK 3 7 3.1832 - 3.0238 1.00 1277 143 0.2143 0.2821 REMARK 3 8 3.0238 - 2.8921 1.00 1296 146 0.2313 0.3183 REMARK 3 9 2.8921 - 2.7808 1.00 1257 135 0.2372 0.3111 REMARK 3 10 2.7808 - 2.6848 1.00 1308 145 0.2577 0.3455 REMARK 3 11 2.6848 - 2.6009 1.00 1261 138 0.2596 0.3091 REMARK 3 12 2.6009 - 2.5265 1.00 1303 146 0.2797 0.4011 REMARK 3 13 2.5265 - 2.4600 1.00 1272 135 0.2971 0.3588 REMARK 3 14 2.4600 - 2.4000 1.00 1274 147 0.3154 0.3926 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4006 REMARK 3 ANGLE : 0.605 5461 REMARK 3 CHIRALITY : 0.024 584 REMARK 3 PLANARITY : 0.002 707 REMARK 3 DIHEDRAL : 12.687 1439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8210 11.8339 10.7563 REMARK 3 T TENSOR REMARK 3 T11: 0.4736 T22: 0.4262 REMARK 3 T33: 0.4427 T12: 0.0674 REMARK 3 T13: -0.0964 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 2.0443 L22: 8.3890 REMARK 3 L33: 3.7979 L12: 1.4580 REMARK 3 L13: -0.1892 L23: -3.0815 REMARK 3 S TENSOR REMARK 3 S11: 0.1918 S12: -0.1609 S13: -0.0651 REMARK 3 S21: 0.9107 S22: -0.3248 S23: -0.6453 REMARK 3 S31: -0.1959 S32: 0.5466 S33: 0.1513 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2412 6.7949 -0.8974 REMARK 3 T TENSOR REMARK 3 T11: 0.6095 T22: 0.5345 REMARK 3 T33: 0.5964 T12: 0.1265 REMARK 3 T13: 0.0898 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 6.1000 L22: 8.3461 REMARK 3 L33: 5.9546 L12: -1.3441 REMARK 3 L13: 0.0741 L23: -3.8271 REMARK 3 S TENSOR REMARK 3 S11: 0.5454 S12: 0.4881 S13: -0.6580 REMARK 3 S21: -1.1928 S22: -0.6640 S23: -0.7530 REMARK 3 S31: 1.1617 S32: 1.0669 S33: 0.0468 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4768 15.2043 -3.6327 REMARK 3 T TENSOR REMARK 3 T11: 0.5385 T22: 0.3380 REMARK 3 T33: 0.3998 T12: -0.0028 REMARK 3 T13: -0.0423 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 1.1300 L22: 4.4248 REMARK 3 L33: 2.7227 L12: 0.0283 REMARK 3 L13: -0.1945 L23: -1.7524 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: 0.2229 S13: -0.1385 REMARK 3 S21: -0.6904 S22: 0.1107 S23: 0.0642 REMARK 3 S31: 0.4007 S32: 0.2295 S33: -0.1866 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2915 34.2675 -3.1101 REMARK 3 T TENSOR REMARK 3 T11: 0.7740 T22: 0.3099 REMARK 3 T33: 0.5315 T12: -0.1687 REMARK 3 T13: -0.0894 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 6.3412 L22: 4.7965 REMARK 3 L33: 4.3428 L12: -3.9455 REMARK 3 L13: -0.8599 L23: -1.2777 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0250 S13: 0.2590 REMARK 3 S21: 0.5471 S22: -0.0584 S23: -0.0478 REMARK 3 S31: -0.5580 S32: 0.0693 S33: -0.0694 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7995 -4.4595 28.9112 REMARK 3 T TENSOR REMARK 3 T11: 0.3833 T22: 0.4158 REMARK 3 T33: 0.4368 T12: 0.0837 REMARK 3 T13: 0.0168 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 4.1828 L22: 2.9129 REMARK 3 L33: 4.4782 L12: 3.1104 REMARK 3 L13: 1.4582 L23: 1.6922 REMARK 3 S TENSOR REMARK 3 S11: 0.1366 S12: -0.2132 S13: 0.7163 REMARK 3 S21: -0.2500 S22: -0.3764 S23: 0.5319 REMARK 3 S31: -0.4501 S32: -0.5300 S33: 0.3065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 230 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9529 -21.3644 21.2252 REMARK 3 T TENSOR REMARK 3 T11: 0.4322 T22: 0.5295 REMARK 3 T33: 0.6007 T12: -0.0416 REMARK 3 T13: 0.0493 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.3195 L22: 8.8188 REMARK 3 L33: 3.4775 L12: -1.2557 REMARK 3 L13: 0.9337 L23: 0.2266 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.3661 S13: -0.1942 REMARK 3 S21: -0.4735 S22: -0.2071 S23: 0.6161 REMARK 3 S31: 0.1188 S32: -0.6146 S33: -0.0334 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 268 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8336 -10.3596 39.6558 REMARK 3 T TENSOR REMARK 3 T11: 0.6503 T22: 0.5819 REMARK 3 T33: 0.3260 T12: 0.0135 REMARK 3 T13: 0.1240 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 6.4755 L22: 7.2238 REMARK 3 L33: 3.2426 L12: 3.3545 REMARK 3 L13: 1.4341 L23: 1.7555 REMARK 3 S TENSOR REMARK 3 S11: 0.3119 S12: -0.9432 S13: -0.0841 REMARK 3 S21: 0.9650 S22: -0.5007 S23: 0.2706 REMARK 3 S31: 0.4029 S32: -0.4055 S33: 0.2195 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 349 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2018 -0.8466 36.6986 REMARK 3 T TENSOR REMARK 3 T11: 0.5185 T22: 0.4592 REMARK 3 T33: 0.3870 T12: 0.0932 REMARK 3 T13: 0.0882 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 3.4634 L22: 6.8348 REMARK 3 L33: 2.6197 L12: 2.5690 REMARK 3 L13: 1.4354 L23: 2.1553 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.5683 S13: 0.2695 REMARK 3 S21: 0.3477 S22: -0.2748 S23: 0.1453 REMARK 3 S31: -0.1864 S32: -0.2645 S33: 0.0979 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 433 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8048 -8.4597 8.5224 REMARK 3 T TENSOR REMARK 3 T11: 1.1255 T22: 0.8043 REMARK 3 T33: 1.0227 T12: 0.3406 REMARK 3 T13: -0.2265 T23: 0.1142 REMARK 3 L TENSOR REMARK 3 L11: 7.8804 L22: 4.2784 REMARK 3 L33: 7.2017 L12: -2.3742 REMARK 3 L13: 4.9593 L23: -0.9003 REMARK 3 S TENSOR REMARK 3 S11: 0.9716 S12: -0.5803 S13: -0.6136 REMARK 3 S21: 0.7135 S22: -0.1865 S23: -1.2423 REMARK 3 S31: 2.1579 S32: 0.5000 S33: -0.5655 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 435 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5144 -30.4037 29.4428 REMARK 3 T TENSOR REMARK 3 T11: 1.2340 T22: 0.6910 REMARK 3 T33: 1.4638 T12: -0.2390 REMARK 3 T13: 0.1378 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 6.3411 L22: 0.2957 REMARK 3 L33: 8.5945 L12: -0.9935 REMARK 3 L13: 7.3287 L23: -1.3391 REMARK 3 S TENSOR REMARK 3 S11: 1.8477 S12: -1.0545 S13: -0.3317 REMARK 3 S21: -0.4679 S22: -0.1847 S23: 1.2903 REMARK 3 S31: 0.7221 S32: -0.8419 S33: -1.5578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 64.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 80 MM MGCL2, REMARK 280 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 PHE A 188 REMARK 465 GLY A 423 REMARK 465 PRO A 424 REMARK 465 GLY A 425 REMARK 465 GLU A 426 REMARK 465 SER A 427 REMARK 465 SER B 186 REMARK 465 GLU B 187 REMARK 465 PHE B 188 REMARK 465 GLY B 423 REMARK 465 PRO B 424 REMARK 465 GLY B 425 REMARK 465 GLU B 426 REMARK 465 SER B 427 REMARK 465 LEU C 447 REMARK 465 GLY C 448 REMARK 465 TRP C 449 REMARK 465 GLY C 450 REMARK 465 SER D 433 REMARK 465 GLY D 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 194 O ASN B 397 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 235 85.89 -169.67 REMARK 500 THR A 237 -42.76 167.10 REMARK 500 SER A 251 -26.39 -141.28 REMARK 500 SER A 296 -158.73 -141.92 REMARK 500 SER A 303 -71.42 -66.45 REMARK 500 HIS A 305 -52.99 -159.44 REMARK 500 PRO A 353 95.15 -67.80 REMARK 500 PRO B 248 -8.61 -52.37 REMARK 500 MET B 250 -56.57 65.80 REMARK 500 SER B 303 -121.40 -133.88 REMARK 500 TYR B 342 -0.04 -141.05 REMARK 500 ASP B 355 52.93 -102.87 REMARK 500 GLN B 356 140.60 -172.03 REMARK 500 SER D 444 92.46 -64.74 REMARK 500 SER D 446 -79.43 -169.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JEJ RELATED DB: PDB REMARK 900 RELATED ID: 5JEL RELATED DB: PDB REMARK 900 RELATED ID: 5JEM RELATED DB: PDB REMARK 900 RELATED ID: 5JEO RELATED DB: PDB REMARK 900 RELATED ID: 5JER RELATED DB: PDB DBREF 5JEK A 189 427 UNP Q14653 IRF3_HUMAN 189 427 DBREF 5JEK B 189 427 UNP Q14653 IRF3_HUMAN 189 427 DBREF 5JEK C 433 450 PDB 5JEK 5JEK 433 450 DBREF 5JEK D 433 450 PDB 5JEK 5JEK 433 450 SEQADV 5JEK SER A 186 UNP Q14653 EXPRESSION TAG SEQADV 5JEK GLU A 187 UNP Q14653 EXPRESSION TAG SEQADV 5JEK PHE A 188 UNP Q14653 EXPRESSION TAG SEQADV 5JEK SER B 186 UNP Q14653 EXPRESSION TAG SEQADV 5JEK GLU B 187 UNP Q14653 EXPRESSION TAG SEQADV 5JEK PHE B 188 UNP Q14653 EXPRESSION TAG SEQRES 1 A 242 SER GLU PHE GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 A 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 A 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 A 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 A 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 A 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 A 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 A 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 A 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 A 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 A 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 A 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 A 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 A 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 A 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 A 242 VAL GLY GLY ALA SER SER LEU GLU ASN THR VAL ASP LEU SEQRES 17 A 242 HIS ILE SER ASN SER HIS PRO LEU SER LEU THR SER ASP SEQRES 18 A 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 A 242 ASP PHE GLN GLY PRO GLY GLU SER SEQRES 1 B 242 SER GLU PHE GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 B 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 B 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 B 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 B 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 B 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 B 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 B 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 B 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 B 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 B 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 B 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 B 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 B 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 B 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 B 242 VAL GLY GLY ALA SER SER LEU GLU ASN THR VAL ASP LEU SEQRES 17 B 242 HIS ILE SER ASN SER HIS PRO LEU SER LEU THR SER ASP SEQRES 18 B 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 B 242 ASP PHE GLN GLY PRO GLY GLU SER SEQRES 1 C 18 SER GLY CYS PHE GLU ASP LEU ALA ILE SEP ALA SER THR SEQRES 2 C 18 SER LEU GLY TRP GLY SEQRES 1 D 18 SER GLY CYS PHE GLU ASP LEU ALA ILE SEP ALA SER THR SEQRES 2 D 18 SER LEU GLY TRP GLY HET SEP C 442 10 HET SEP D 442 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 HOH *70(H2 O) HELIX 1 AA1 ASN A 190 VAL A 197 5 8 HELIX 2 AA2 ASP A 247 SER A 251 5 5 HELIX 3 AA3 ASP A 254 CYS A 267 1 14 HELIX 4 AA4 LEU A 322 GLU A 334 1 13 HELIX 5 AA5 PRO A 357 ARG A 361 5 5 HELIX 6 AA6 THR A 370 GLY A 383 1 14 HELIX 7 AA7 SER A 405 GLY A 418 1 14 HELIX 8 AA8 ASN B 190 LEU B 196 5 7 HELIX 9 AA9 ASP B 254 SER B 266 1 13 HELIX 10 AB1 LEU B 322 GLU B 334 1 13 HELIX 11 AB2 PRO B 357 ARG B 361 5 5 HELIX 12 AB3 THR B 370 VAL B 381 1 12 HELIX 13 AB4 GLY B 382 ALA B 384 5 3 HELIX 14 AB5 THR B 404 GLU B 417 1 14 SHEET 1 AA1 6 ARG A 213 ILE A 220 0 SHEET 2 AA1 6 PHE A 204 TYR A 210 -1 N VAL A 206 O GLN A 218 SHEET 3 AA1 6 VAL A 363 PRO A 369 -1 O LYS A 366 N THR A 207 SHEET 4 AA1 6 ALA A 343 VAL A 348 -1 N LEU A 344 O VAL A 367 SHEET 5 AA1 6 THR A 291 SER A 296 -1 N TYR A 292 O CYS A 347 SHEET 6 AA1 6 GLY A 309 GLU A 310 -1 O GLY A 309 N TRP A 293 SHEET 1 AA2 5 TRP A 241 THR A 244 0 SHEET 2 AA2 5 LEU A 226 VAL A 229 1 N ARG A 227 O VAL A 243 SHEET 3 AA2 5 LEU A 272 ALA A 277 -1 O LEU A 274 N LEU A 226 SHEET 4 AA2 5 TRP A 280 ARG A 285 -1 O TRP A 282 N TRP A 275 SHEET 5 AA2 5 GLY A 318 ASP A 321 -1 O VAL A 319 N LEU A 281 SHEET 1 AA3 2 GLU A 388 VAL A 391 0 SHEET 2 AA3 2 LEU A 401 THR A 404 -1 O LEU A 401 N VAL A 391 SHEET 1 AA4 6 ARG B 213 SER B 221 0 SHEET 2 AA4 6 GLU B 203 TYR B 210 -1 N PHE B 204 O ILE B 220 SHEET 3 AA4 6 VAL B 363 PRO B 369 -1 O LYS B 366 N THR B 207 SHEET 4 AA4 6 ALA B 343 VAL B 348 -1 N LEU B 344 O VAL B 367 SHEET 5 AA4 6 THR B 291 SER B 296 -1 N TYR B 292 O CYS B 347 SHEET 6 AA4 6 GLY B 309 GLU B 310 -1 O GLY B 309 N TRP B 293 SHEET 1 AA5 5 TRP B 241 THR B 244 0 SHEET 2 AA5 5 LEU B 226 VAL B 229 1 N ARG B 227 O VAL B 243 SHEET 3 AA5 5 LEU B 272 ALA B 277 -1 O LEU B 274 N LEU B 226 SHEET 4 AA5 5 TRP B 280 ARG B 285 -1 O TRP B 282 N TRP B 275 SHEET 5 AA5 5 GLY B 317 ASP B 321 -1 O VAL B 319 N LEU B 281 SHEET 1 AA6 2 ASN B 389 VAL B 391 0 SHEET 2 AA6 2 LEU B 401 LEU B 403 -1 O LEU B 403 N ASN B 389 LINK C ILE C 441 N SEP C 442 1555 1555 1.33 LINK C SEP C 442 N ALA C 443 1555 1555 1.33 LINK C ILE D 441 N SEP D 442 1555 1555 1.33 LINK C SEP D 442 N ALA D 443 1555 1555 1.33 CISPEP 1 GLY B 249 MET B 250 0 -13.14 CISPEP 2 HIS B 305 GLY B 306 0 8.85 CISPEP 3 SER C 433 GLY C 434 0 8.95 CISPEP 4 GLU D 437 ASP D 438 0 -3.15 CISPEP 5 TRP D 449 GLY D 450 0 1.26 CRYST1 38.800 104.910 66.270 90.00 106.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025773 0.000000 0.007454 0.00000 SCALE2 0.000000 0.009532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015708 0.00000