HEADER IMMUNE SYSTEM 18-APR-16 5JEO TITLE PHOSPHORYLATED ROTAVIRUS NSP1 IN COMPLEX WITH IRF-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROTAVIRUS NSP1 PEPTIDE; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INTERFERON REGULATORY FACTOR 3; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: UNP RESIDUES 189-427; COMPND 9 SYNONYM: IRF-3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 28875; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: IRF3; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL IMMUINITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,P.LI REVDAT 2 29-JUN-16 5JEO 1 JRNL REVDAT 1 15-JUN-16 5JEO 0 JRNL AUTH B.ZHAO,C.SHU,X.GAO,B.SANKARAN,F.DU,C.L.SHELTON,A.B.HERR, JRNL AUTH 2 J.Y.JI,P.LI JRNL TITL STRUCTURAL BASIS FOR CONCERTED RECRUITMENT AND ACTIVATION OF JRNL TITL 2 IRF-3 BY INNATE IMMUNE ADAPTOR PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E3403 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27302953 JRNL DOI 10.1073/PNAS.1603269113 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9081 - 4.1424 1.00 3098 157 0.1543 0.1624 REMARK 3 2 4.1424 - 3.2883 1.00 2949 144 0.1495 0.1585 REMARK 3 3 3.2883 - 2.8727 1.00 2927 143 0.1719 0.1768 REMARK 3 4 2.8727 - 2.6101 1.00 2880 143 0.1739 0.1748 REMARK 3 5 2.6101 - 2.4230 1.00 2906 145 0.1712 0.1959 REMARK 3 6 2.4230 - 2.2802 1.00 2887 140 0.1703 0.2144 REMARK 3 7 2.2802 - 2.1660 1.00 2868 145 0.1730 0.1763 REMARK 3 8 2.1660 - 2.0717 1.00 2874 141 0.1815 0.2082 REMARK 3 9 2.0717 - 1.9919 1.00 2860 142 0.1822 0.2077 REMARK 3 10 1.9919 - 1.9232 1.00 2870 144 0.1807 0.2249 REMARK 3 11 1.9232 - 1.8631 1.00 2837 137 0.1867 0.2106 REMARK 3 12 1.8631 - 1.8098 1.00 2882 143 0.2138 0.2441 REMARK 3 13 1.8098 - 1.7622 1.00 2852 138 0.2500 0.2964 REMARK 3 14 1.7622 - 1.7192 0.99 2845 139 0.2663 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2043 REMARK 3 ANGLE : 1.005 2795 REMARK 3 CHIRALITY : 0.046 296 REMARK 3 PLANARITY : 0.005 364 REMARK 3 DIHEDRAL : 13.923 741 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 482 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.6239 -2.3104 -0.9385 REMARK 3 T TENSOR REMARK 3 T11: 0.5019 T22: 0.4119 REMARK 3 T33: 0.3498 T12: -0.1557 REMARK 3 T13: -0.1017 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.4525 L22: 4.7392 REMARK 3 L33: 3.2792 L12: -3.7130 REMARK 3 L13: 3.3431 L23: -3.5018 REMARK 3 S TENSOR REMARK 3 S11: -0.7548 S12: 0.4782 S13: -0.0608 REMARK 3 S21: -1.2516 S22: 0.6546 S23: 0.6360 REMARK 3 S31: 0.2092 S32: -0.6457 S33: -0.1695 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2958 12.6066 10.3077 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.2056 REMARK 3 T33: 0.2148 T12: -0.1251 REMARK 3 T13: -0.0003 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.2189 L22: 1.1086 REMARK 3 L33: 1.8828 L12: -0.3702 REMARK 3 L13: -0.7224 L23: -0.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.1315 S13: 0.2122 REMARK 3 S21: -0.1319 S22: 0.1771 S23: -0.2485 REMARK 3 S31: -0.5083 S32: 0.3648 S33: -0.1151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4572 -0.2951 -1.1737 REMARK 3 T TENSOR REMARK 3 T11: 0.4233 T22: 0.3130 REMARK 3 T33: 0.2844 T12: -0.0924 REMARK 3 T13: 0.0391 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 0.5053 L22: 9.4612 REMARK 3 L33: 3.3125 L12: 1.0102 REMARK 3 L13: -0.2504 L23: -5.0426 REMARK 3 S TENSOR REMARK 3 S11: -0.2099 S12: 0.2837 S13: -0.1704 REMARK 3 S21: -1.0824 S22: 0.0690 S23: -0.5689 REMARK 3 S31: 0.4315 S32: 0.1675 S33: 0.0736 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3221 10.8895 10.3194 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.1665 REMARK 3 T33: 0.2268 T12: -0.0291 REMARK 3 T13: -0.0106 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.9854 L22: 2.6697 REMARK 3 L33: 2.7322 L12: 0.4663 REMARK 3 L13: 0.3387 L23: 0.8110 REMARK 3 S TENSOR REMARK 3 S11: -0.1504 S12: 0.1158 S13: 0.1666 REMARK 3 S21: -0.1530 S22: 0.2204 S23: 0.2525 REMARK 3 S31: -0.3330 S32: -0.1329 S33: -0.0500 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0579 16.8950 21.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.1574 REMARK 3 T33: 0.2333 T12: -0.0443 REMARK 3 T13: 0.0200 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 2.2688 L22: 3.9735 REMARK 3 L33: 3.5744 L12: 0.4441 REMARK 3 L13: -0.2933 L23: 0.5562 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.1687 S13: 0.3844 REMARK 3 S21: 0.2913 S22: 0.2554 S23: -0.1561 REMARK 3 S31: -0.7276 S32: 0.4312 S33: -0.0998 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42593 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.719 REMARK 200 RESOLUTION RANGE LOW (A) : 44.893 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 44.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM PH7.5, 0.8 M REMARK 280 NAH2PO4, 0.8 M KH2PO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.03400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.51700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.51700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.03400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.51700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 797 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 805 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 478 REMARK 465 THR B 479 REMARK 465 LEU B 480 REMARK 465 THR B 481 REMARK 465 GLU B 492 REMARK 465 ASP B 493 REMARK 465 ASP B 494 REMARK 465 TRP B 495 REMARK 465 GLU B 496 REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 PHE A 188 REMARK 465 GLY A 423 REMARK 465 PRO A 424 REMARK 465 GLY A 425 REMARK 465 GLU A 426 REMARK 465 SER A 427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 715 O HOH A 760 1.83 REMARK 500 O HOH A 695 O HOH A 787 1.94 REMARK 500 O HOH A 684 O HOH A 740 1.98 REMARK 500 O HOH A 602 O HOH A 606 2.00 REMARK 500 O HOH A 711 O HOH A 759 2.03 REMARK 500 OE1 GLU B 483 O HOH B 501 2.05 REMARK 500 OD2 ASP A 235 O HOH A 601 2.10 REMARK 500 O HOH A 640 O HOH A 759 2.15 REMARK 500 NH1 ARG A 194 O HOH A 602 2.15 REMARK 500 OE1 GLU A 203 O HOH A 603 2.16 REMARK 500 O HOH A 614 O HOH A 761 2.17 REMARK 500 O3P SEP B 489 O HOH B 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 612 O HOH A 749 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 302 78.63 -119.08 REMARK 500 SER A 303 83.88 -178.18 REMARK 500 HIS A 305 62.30 -109.03 REMARK 500 ASP A 314 -9.48 73.06 REMARK 500 TYR A 342 -0.13 -142.46 REMARK 500 SER A 385 -147.38 -168.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JEJ RELATED DB: PDB REMARK 900 RELATED ID: 5JEL RELATED DB: PDB REMARK 900 RELATED ID: 5JEK RELATED DB: PDB REMARK 900 RELATED ID: 5JEM RELATED DB: PDB REMARK 900 RELATED ID: 5JER RELATED DB: PDB DBREF 5JEO B 478 496 PDB 5JEO 5JEO 478 496 DBREF 5JEO A 189 427 UNP Q14653 IRF3_HUMAN 189 427 SEQADV 5JEO SER A 186 UNP Q14653 EXPRESSION TAG SEQADV 5JEO GLU A 187 UNP Q14653 EXPRESSION TAG SEQADV 5JEO PHE A 188 UNP Q14653 EXPRESSION TAG SEQRES 1 B 19 SER THR LEU THR GLU GLU PHE GLU LEU LEU ILE SEP ASN SEQRES 2 B 19 SER GLU ASP ASP TRP GLU SEQRES 1 A 242 SER GLU PHE GLU ASN PRO LEU LYS ARG LEU LEU VAL PRO SEQRES 2 A 242 GLY GLU GLU TRP GLU PHE GLU VAL THR ALA PHE TYR ARG SEQRES 3 A 242 GLY ARG GLN VAL PHE GLN GLN THR ILE SER CYS PRO GLU SEQRES 4 A 242 GLY LEU ARG LEU VAL GLY SER GLU VAL GLY ASP ARG THR SEQRES 5 A 242 LEU PRO GLY TRP PRO VAL THR LEU PRO ASP PRO GLY MET SEQRES 6 A 242 SER LEU THR ASP ARG GLY VAL MET SER TYR VAL ARG HIS SEQRES 7 A 242 VAL LEU SER CYS LEU GLY GLY GLY LEU ALA LEU TRP ARG SEQRES 8 A 242 ALA GLY GLN TRP LEU TRP ALA GLN ARG LEU GLY HIS CYS SEQRES 9 A 242 HIS THR TYR TRP ALA VAL SER GLU GLU LEU LEU PRO ASN SEQRES 10 A 242 SER GLY HIS GLY PRO ASP GLY GLU VAL PRO LYS ASP LYS SEQRES 11 A 242 GLU GLY GLY VAL PHE ASP LEU GLY PRO PHE ILE VAL ASP SEQRES 12 A 242 LEU ILE THR PHE THR GLU GLY SER GLY ARG SER PRO ARG SEQRES 13 A 242 TYR ALA LEU TRP PHE CYS VAL GLY GLU SER TRP PRO GLN SEQRES 14 A 242 ASP GLN PRO TRP THR LYS ARG LEU VAL MET VAL LYS VAL SEQRES 15 A 242 VAL PRO THR CYS LEU ARG ALA LEU VAL GLU MET ALA ARG SEQRES 16 A 242 VAL GLY GLY ALA SER SER LEU GLU ASN THR VAL ASP LEU SEQRES 17 A 242 HIS ILE SER ASN SER HIS PRO LEU SER LEU THR SER ASP SEQRES 18 A 242 GLN TYR LYS ALA TYR LEU GLN ASP LEU VAL GLU GLY MET SEQRES 19 A 242 ASP PHE GLN GLY PRO GLY GLU SER HET SEP B 489 10 HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 A 503 5 HETNAM SEP PHOSPHOSERINE HETNAM PO4 PHOSPHATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *216(H2 O) HELIX 1 AA1 ASN A 190 VAL A 197 5 8 HELIX 2 AA2 ASP A 254 CYS A 267 1 14 HELIX 3 AA3 LEU A 322 GLU A 334 1 13 HELIX 4 AA4 PRO A 357 ARG A 361 5 5 HELIX 5 AA5 THR A 370 GLY A 383 1 14 HELIX 6 AA6 SER A 405 GLY A 418 1 14 SHEET 1 AA1 6 ARG A 213 ILE A 220 0 SHEET 2 AA1 6 PHE A 204 TYR A 210 -1 N VAL A 206 O GLN A 218 SHEET 3 AA1 6 MET A 364 PRO A 369 -1 O VAL A 368 N GLU A 205 SHEET 4 AA1 6 ALA A 343 VAL A 348 -1 N LEU A 344 O VAL A 367 SHEET 5 AA1 6 THR A 291 SER A 296 -1 N SER A 296 O ALA A 343 SHEET 6 AA1 6 GLY A 309 GLU A 310 -1 O GLY A 309 N TRP A 293 SHEET 1 AA2 5 TRP A 241 THR A 244 0 SHEET 2 AA2 5 LEU A 226 VAL A 229 1 N ARG A 227 O VAL A 243 SHEET 3 AA2 5 LEU A 272 ALA A 277 -1 O LEU A 272 N LEU A 228 SHEET 4 AA2 5 TRP A 280 ARG A 285 -1 O TRP A 282 N TRP A 275 SHEET 5 AA2 5 GLY A 317 ASP A 321 -1 O VAL A 319 N LEU A 281 SHEET 1 AA3 2 GLU A 388 VAL A 391 0 SHEET 2 AA3 2 LEU A 401 THR A 404 -1 O LEU A 401 N VAL A 391 LINK C ILE B 488 N SEP B 489 1555 1555 1.33 LINK C SEP B 489 N ASN B 490 1555 1555 1.33 CISPEP 1 VAL A 233 GLY A 234 0 -0.53 CISPEP 2 SER A 303 GLY A 304 0 -5.55 SITE 1 AC1 5 ASP A 328 ARG A 338 PRO A 340 ARG A 341 SITE 2 AC1 5 HOH A 640 SITE 1 AC2 5 ARG A 211 ASP A 254 VAL A 257 ARG A 338 SITE 2 AC2 5 SER A 339 SITE 1 AC3 8 THR A 237 PRO A 239 ASP A 254 ARG A 255 SITE 2 AC3 8 GLY A 256 VAL A 257 GLY A 335 GLY A 337 CRYST1 72.982 72.982 127.551 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013702 0.007911 0.000000 0.00000 SCALE2 0.000000 0.015822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007840 0.00000