HEADER TRANSFERASE 19-APR-16 5JFF TITLE E. COLI ECFICT MUTANT G55R IN COMPLEX WITH ECFICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE FIC; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CELL FILAMENTATION PROTEIN FIC; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UNCHARACTERIZED PROTEIN YHFG; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FIC, B3361, JW3324; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 STRAIN: K12; SOURCE 14 GENE: YHFG, B3362, JW3325; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FIC DOMAIN, FIC-1, CLASS I FIC PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.V.STANGER,T.SCHIRMER REVDAT 2 10-JAN-24 5JFF 1 REMARK REVDAT 1 05-OCT-16 5JFF 0 JRNL AUTH F.V.STANGER,A.HARMS,C.DEHIO,T.SCHIRMER JRNL TITL CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI FIC TOXIN-LIKE JRNL TITL 2 PROTEIN IN COMPLEX WITH ITS COGNATE ANTITOXIN. JRNL REF PLOS ONE V. 11 63654 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27657533 JRNL DOI 10.1371/JOURNAL.PONE.0163654 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4152 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3958 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5613 ; 1.769 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9044 ; 1.605 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 5.640 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.454 ;23.584 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 725 ;13.739 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.659 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4755 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1044 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1979 ; 2.753 ; 2.819 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1978 ; 2.746 ; 2.816 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2472 ; 3.844 ; 4.193 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 195 C 10 195 21658 0.130 0.050 REMARK 3 2 B 4 52 D 4 52 4872 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5JFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 91.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS PH 8.0, 20% REMARK 280 (W/V) PEG 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.84000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.26000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 GLN A -12 REMARK 465 ASP A -11 REMARK 465 PRO A -10 REMARK 465 ASN A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 ALA A -5 REMARK 465 ARG A -4 REMARK 465 LEU A -3 REMARK 465 GLN A -2 REMARK 465 VAL A -1 REMARK 465 GLU A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 16 REMARK 465 SER A 199 REMARK 465 GLU A 200 REMARK 465 MET B -12 REMARK 465 ALA B -11 REMARK 465 TYR B -10 REMARK 465 PRO B -9 REMARK 465 TYR B -8 REMARK 465 ASP B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ASP B -4 REMARK 465 TYR B -3 REMARK 465 ALA B -2 REMARK 465 ALA B -1 REMARK 465 ALA B 0 REMARK 465 VAL B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 54 REMARK 465 ARG B 55 REMARK 465 MET C -23 REMARK 465 GLY C -22 REMARK 465 SER C -21 REMARK 465 SER C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 SER C -13 REMARK 465 GLN C -12 REMARK 465 ASP C -11 REMARK 465 PRO C -10 REMARK 465 ASN C -9 REMARK 465 SER C -8 REMARK 465 SER C -7 REMARK 465 SER C -6 REMARK 465 ALA C -5 REMARK 465 ARG C -4 REMARK 465 LEU C -3 REMARK 465 GLN C -2 REMARK 465 VAL C -1 REMARK 465 GLU C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 ASP C 3 REMARK 465 LYS C 4 REMARK 465 PHE C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 GLY C 8 REMARK 465 ARG C 9 REMARK 465 GLY C 16 REMARK 465 GLY C 197 REMARK 465 GLU C 198 REMARK 465 SER C 199 REMARK 465 GLU C 200 REMARK 465 MET D -12 REMARK 465 ALA D -11 REMARK 465 ARG D 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 3 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO C 15 N LEU C 17 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 10 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP C 10 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP C 10 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG C 21 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 64 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG C 64 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG C 123 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG C 123 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 55 -160.36 -120.72 REMARK 500 ASP C 18 40.32 -146.91 REMARK 500 ARG C 55 -167.20 -118.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 144 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 101 DBREF 5JFF A 1 200 UNP P20605 FIC_ECOLI 1 200 DBREF 5JFF B 1 55 UNP P0ADX5 YHFG_ECOLI 1 55 DBREF 5JFF C 1 200 UNP P20605 FIC_ECOLI 1 200 DBREF 5JFF D 1 55 UNP P0ADX5 YHFG_ECOLI 1 55 SEQADV 5JFF MET A -23 UNP P20605 INITIATING METHIONINE SEQADV 5JFF GLY A -22 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER A -21 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER A -20 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS A -19 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS A -18 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS A -17 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS A -16 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS A -15 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS A -14 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER A -13 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLN A -12 UNP P20605 EXPRESSION TAG SEQADV 5JFF ASP A -11 UNP P20605 EXPRESSION TAG SEQADV 5JFF PRO A -10 UNP P20605 EXPRESSION TAG SEQADV 5JFF ASN A -9 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER A -8 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER A -7 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER A -6 UNP P20605 EXPRESSION TAG SEQADV 5JFF ALA A -5 UNP P20605 EXPRESSION TAG SEQADV 5JFF ARG A -4 UNP P20605 EXPRESSION TAG SEQADV 5JFF LEU A -3 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLN A -2 UNP P20605 EXPRESSION TAG SEQADV 5JFF VAL A -1 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLU A 0 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLY A 2 UNP P20605 SER 2 CONFLICT SEQADV 5JFF HIS A 27 UNP P20605 ARG 27 CONFLICT SEQADV 5JFF ARG A 55 UNP P20605 GLY 55 ENGINEERED MUTATION SEQADV 5JFF MET B -12 UNP P0ADX5 INITIATING METHIONINE SEQADV 5JFF ALA B -11 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF TYR B -10 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF PRO B -9 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF TYR B -8 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ASP B -7 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF VAL B -6 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF PRO B -5 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ASP B -4 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF TYR B -3 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ALA B -2 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ALA B -1 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ALA B 0 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF VAL B 1 UNP P0ADX5 MET 1 CONFLICT SEQADV 5JFF MET C -23 UNP P20605 INITIATING METHIONINE SEQADV 5JFF GLY C -22 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER C -21 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER C -20 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS C -19 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS C -18 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS C -17 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS C -16 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS C -15 UNP P20605 EXPRESSION TAG SEQADV 5JFF HIS C -14 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER C -13 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLN C -12 UNP P20605 EXPRESSION TAG SEQADV 5JFF ASP C -11 UNP P20605 EXPRESSION TAG SEQADV 5JFF PRO C -10 UNP P20605 EXPRESSION TAG SEQADV 5JFF ASN C -9 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER C -8 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER C -7 UNP P20605 EXPRESSION TAG SEQADV 5JFF SER C -6 UNP P20605 EXPRESSION TAG SEQADV 5JFF ALA C -5 UNP P20605 EXPRESSION TAG SEQADV 5JFF ARG C -4 UNP P20605 EXPRESSION TAG SEQADV 5JFF LEU C -3 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLN C -2 UNP P20605 EXPRESSION TAG SEQADV 5JFF VAL C -1 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLU C 0 UNP P20605 EXPRESSION TAG SEQADV 5JFF GLY C 2 UNP P20605 SER 2 CONFLICT SEQADV 5JFF HIS C 27 UNP P20605 ARG 27 CONFLICT SEQADV 5JFF ARG C 55 UNP P20605 GLY 55 ENGINEERED MUTATION SEQADV 5JFF MET D -12 UNP P0ADX5 INITIATING METHIONINE SEQADV 5JFF ALA D -11 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF TYR D -10 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF PRO D -9 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF TYR D -8 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ASP D -7 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF VAL D -6 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF PRO D -5 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ASP D -4 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF TYR D -3 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ALA D -2 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ALA D -1 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF ALA D 0 UNP P0ADX5 EXPRESSION TAG SEQADV 5JFF VAL D 1 UNP P0ADX5 MET 1 CONFLICT SEQRES 1 A 224 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 224 PRO ASN SER SER SER ALA ARG LEU GLN VAL GLU MET GLY SEQRES 3 A 224 ASP LYS PHE GLY GLU GLY ARG ASP PRO TYR LEU TYR PRO SEQRES 4 A 224 GLY LEU ASP ILE MET ARG ASN ARG LEU ASN ILE HIS GLN SEQRES 5 A 224 GLN GLN ARG LEU GLU GLN ALA ALA TYR GLU MET THR ALA SEQRES 6 A 224 LEU ARG ALA ALA THR ILE GLU LEU GLY PRO LEU VAL ARG SEQRES 7 A 224 ARG LEU PRO HIS LEU ARG THR ILE HIS ARG GLN LEU TYR SEQRES 8 A 224 GLN ASP ILE PHE ASP TRP ALA GLY GLN LEU ARG GLU VAL SEQRES 9 A 224 ASP ILE TYR GLN GLY ASP THR PRO PHE CYS HIS PHE ALA SEQRES 10 A 224 TYR ILE GLU LYS GLU GLY ASN ALA LEU MET GLN ASP LEU SEQRES 11 A 224 GLU GLU GLU GLY TYR LEU VAL GLY LEU GLU LYS ALA LYS SEQRES 12 A 224 PHE VAL GLU ARG LEU ALA HIS TYR TYR CYS GLU ILE ASN SEQRES 13 A 224 VAL LEU HIS PRO PHE ARG VAL GLY SER GLY LEU ALA GLN SEQRES 14 A 224 ARG ILE PHE PHE GLU GLN LEU ALA ILE HIS ALA GLY TYR SEQRES 15 A 224 GLN LEU SER TRP GLN GLY ILE GLU LYS GLU ALA TRP ASN SEQRES 16 A 224 GLN ALA ASN GLN SER GLY ALA MET GLY ASP LEU THR ALA SEQRES 17 A 224 LEU GLN MET ILE PHE SER LYS VAL VAL SER GLU ALA GLY SEQRES 18 A 224 GLU SER GLU SEQRES 1 B 68 MET ALA TYR PRO TYR ASP VAL PRO ASP TYR ALA ALA ALA SEQRES 2 B 68 VAL LYS LYS LEU THR ASP LYS GLN LYS SER ARG LEU TRP SEQRES 3 B 68 GLU LEU GLN ARG ASN ARG ASN PHE GLN ALA SER ARG ARG SEQRES 4 B 68 LEU GLU GLY VAL GLU MET PRO LEU VAL THR LEU THR ALA SEQRES 5 B 68 ALA GLU ALA LEU ALA ARG LEU GLU GLU LEU ARG SER HIS SEQRES 6 B 68 TYR GLU ARG SEQRES 1 C 224 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 C 224 PRO ASN SER SER SER ALA ARG LEU GLN VAL GLU MET GLY SEQRES 3 C 224 ASP LYS PHE GLY GLU GLY ARG ASP PRO TYR LEU TYR PRO SEQRES 4 C 224 GLY LEU ASP ILE MET ARG ASN ARG LEU ASN ILE HIS GLN SEQRES 5 C 224 GLN GLN ARG LEU GLU GLN ALA ALA TYR GLU MET THR ALA SEQRES 6 C 224 LEU ARG ALA ALA THR ILE GLU LEU GLY PRO LEU VAL ARG SEQRES 7 C 224 ARG LEU PRO HIS LEU ARG THR ILE HIS ARG GLN LEU TYR SEQRES 8 C 224 GLN ASP ILE PHE ASP TRP ALA GLY GLN LEU ARG GLU VAL SEQRES 9 C 224 ASP ILE TYR GLN GLY ASP THR PRO PHE CYS HIS PHE ALA SEQRES 10 C 224 TYR ILE GLU LYS GLU GLY ASN ALA LEU MET GLN ASP LEU SEQRES 11 C 224 GLU GLU GLU GLY TYR LEU VAL GLY LEU GLU LYS ALA LYS SEQRES 12 C 224 PHE VAL GLU ARG LEU ALA HIS TYR TYR CYS GLU ILE ASN SEQRES 13 C 224 VAL LEU HIS PRO PHE ARG VAL GLY SER GLY LEU ALA GLN SEQRES 14 C 224 ARG ILE PHE PHE GLU GLN LEU ALA ILE HIS ALA GLY TYR SEQRES 15 C 224 GLN LEU SER TRP GLN GLY ILE GLU LYS GLU ALA TRP ASN SEQRES 16 C 224 GLN ALA ASN GLN SER GLY ALA MET GLY ASP LEU THR ALA SEQRES 17 C 224 LEU GLN MET ILE PHE SER LYS VAL VAL SER GLU ALA GLY SEQRES 18 C 224 GLU SER GLU SEQRES 1 D 68 MET ALA TYR PRO TYR ASP VAL PRO ASP TYR ALA ALA ALA SEQRES 2 D 68 VAL LYS LYS LEU THR ASP LYS GLN LYS SER ARG LEU TRP SEQRES 3 D 68 GLU LEU GLN ARG ASN ARG ASN PHE GLN ALA SER ARG ARG SEQRES 4 D 68 LEU GLU GLY VAL GLU MET PRO LEU VAL THR LEU THR ALA SEQRES 5 D 68 ALA GLU ALA LEU ALA ARG LEU GLU GLU LEU ARG SER HIS SEQRES 6 D 68 TYR GLU ARG HET CL A 301 1 HET CL A 302 1 HET 144 A 303 8 HET CL B 101 1 HET CL C 301 1 HET CL C 302 1 HET CL D 101 1 HETNAM CL CHLORIDE ION HETNAM 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM FORMUL 5 CL 6(CL 1-) FORMUL 7 144 C4 H12 N O3 1+ FORMUL 12 HOH *455(H2 O) HELIX 1 AA1 GLN A 28 ALA A 45 1 18 HELIX 2 AA2 ARG A 55 GLN A 68 1 14 HELIX 3 AA3 HIS A 91 ALA A 93 5 3 HELIX 4 AA4 TYR A 94 GLU A 109 1 16 HELIX 5 AA5 GLY A 110 VAL A 113 5 4 HELIX 6 AA6 GLU A 116 HIS A 135 1 20 HELIX 7 AA7 GLY A 140 ALA A 156 1 17 HELIX 8 AA8 GLU A 166 MET A 179 1 14 HELIX 9 AA9 LEU A 182 VAL A 192 1 11 HELIX 10 AB1 THR B 5 LEU B 27 1 23 HELIX 11 AB2 THR B 38 TYR B 53 1 16 HELIX 12 AB3 GLN C 28 ALA C 45 1 18 HELIX 13 AB4 ARG C 55 GLN C 68 1 14 HELIX 14 AB5 HIS C 91 ALA C 93 5 3 HELIX 15 AB6 TYR C 94 GLU C 109 1 16 HELIX 16 AB7 GLY C 110 VAL C 113 5 4 HELIX 17 AB8 GLU C 116 HIS C 135 1 20 HELIX 18 AB9 GLY C 140 ALA C 156 1 17 HELIX 19 AC1 GLU C 166 MET C 179 1 14 HELIX 20 AC2 LEU C 182 VAL C 192 1 11 HELIX 21 AC3 ALA D -2 LEU D 27 1 30 HELIX 22 AC4 THR D 38 GLU D 54 1 17 SHEET 1 AA1 2 TYR A 83 GLN A 84 0 SHEET 2 AA1 2 THR A 87 PRO A 88 -1 O THR A 87 N GLN A 84 SHEET 1 AA2 2 TYR A 158 LEU A 160 0 SHEET 2 AA2 2 VAL A 193 GLU A 195 -1 O SER A 194 N GLN A 159 SHEET 1 AA3 2 TYR C 83 GLN C 84 0 SHEET 2 AA3 2 THR C 87 PRO C 88 -1 O THR C 87 N GLN C 84 SHEET 1 AA4 2 TYR C 158 LEU C 160 0 SHEET 2 AA4 2 VAL C 193 GLU C 195 -1 O SER C 194 N GLN C 159 CISPEP 1 TYR D -10 PRO D -9 0 0.27 SITE 1 AC1 4 ARG A 55 HIS A 58 HOH A 531 HOH A 553 SITE 1 AC2 3 HIS A 27 GLN A 28 ARG A 31 SITE 1 AC3 8 GLU A 98 GLU A 130 HOH A 401 HOH A 435 SITE 2 AC3 8 HOH A 452 GLU C 98 HOH C 401 HOH C 414 SITE 1 AC4 3 TYR A 67 HOH A 556 ARG B 25 SITE 1 AC5 2 LYS C 117 SER C 190 SITE 1 AC6 2 LEU C 13 ARG C 21 SITE 1 AC7 4 TYR C 67 TYR D -10 ARG D 25 HOH D 256 CRYST1 104.690 104.690 110.520 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009552 0.005515 0.000000 0.00000 SCALE2 0.000000 0.011030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009048 0.00000