HEADER HYDROLASE/HYDROLASE INHIBITOR 19-APR-16 5JFR TITLE POTENT, REVERSIBLE METAP2 INHIBITORS VIA FRAGMENT BASED DRUG DISCOVERY COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 87-455; COMPND 5 SYNONYM: METAP 2,INITIATION FACTOR 2-ASSOCIATED 67 KDA GLYCOPROTEIN, COMPND 6 P67EIF2,PEPTIDASE M; COMPND 7 EC: 3.4.11.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP2, MNPEP, P67EIF2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS HYDROLASE, PEPTIDASE, METAL ION BINDING, PROTEOLYSIS, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DOUGAN,J.D.LAWSON REVDAT 3 13-NOV-24 5JFR 1 JRNL REMARK LINK REVDAT 2 15-JUN-16 5JFR 1 JRNL REVDAT 1 25-MAY-16 5JFR 0 JRNL AUTH C.MCBRIDE,Z.CHERUVALLATH,M.KOMANDLA,M.TANG,P.FARRELL, JRNL AUTH 2 J.D.LAWSON,D.VANDERPOOL,Y.WU,D.R.DOUGAN,A.PLONOWSKI,C.HOLUB, JRNL AUTH 3 C.LARSON JRNL TITL DISCOVERY OF POTENT, REVERSIBLE METAP2 INHIBITORS VIA JRNL TITL 2 FRAGMENT BASED DRUG DISCOVERY AND STRUCTURE BASED DRUG JRNL TITL 3 DESIGN-PART 2. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 2779 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27136719 JRNL DOI 10.1016/J.BMCL.2016.04.072 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33000 REMARK 3 B22 (A**2) : -2.46000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2994 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2809 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4057 ; 1.211 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6495 ; 0.737 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 6.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;32.100 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;11.985 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3369 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 650 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5802 ; 2.193 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 118 ;36.107 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5964 ; 9.265 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 215 REMARK 3 RESIDUE RANGE : A 216 A 269 REMARK 3 RESIDUE RANGE : A 270 A 321 REMARK 3 RESIDUE RANGE : A 322 A 478 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 502 A 502 REMARK 3 RESIDUE RANGE : A 505 A 505 REMARK 3 ORIGIN FOR THE GROUP (A): 21.849 -25.419 -13.436 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.0852 REMARK 3 T33: 0.1181 T12: 0.0085 REMARK 3 T13: 0.0404 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2722 L22: 2.7225 REMARK 3 L33: 0.8421 L12: 0.3341 REMARK 3 L13: -0.0795 L23: -0.6285 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: 0.0055 S13: 0.0704 REMARK 3 S21: 0.2168 S22: 0.0258 S23: 0.4891 REMARK 3 S31: -0.0830 S32: -0.0600 S33: -0.1170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5JFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59409 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD, 0.1M HEPES PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.72250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.72250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.82200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.40800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.82200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.40800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.72250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.82200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.40800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.72250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.82200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.40800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 350 REMARK 465 GLU A 351 REMARK 465 ALA A 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 251 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -15.57 -141.62 REMARK 500 CYS A 223 41.72 -143.55 REMARK 500 ASN A 226 -114.56 65.99 REMARK 500 MET A 378 178.47 73.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 938 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 939 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 8.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 59.3 REMARK 620 3 ASP A 262 OD1 98.3 157.6 REMARK 620 4 GLU A 459 OE2 102.7 98.2 87.3 REMARK 620 5 HOH A 609 O 90.8 91.4 87.7 166.1 REMARK 620 6 HOH A 642 O 151.6 93.6 108.4 88.4 81.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 92.9 REMARK 620 3 GLU A 364 OE1 162.8 85.2 REMARK 620 4 GLU A 459 OE1 82.6 116.3 82.9 REMARK 620 5 6KP A 505 N15 90.0 80.3 106.4 162.0 REMARK 620 6 HOH A 642 O 102.4 156.3 85.4 84.0 81.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6KP A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JHU RELATED DB: PDB REMARK 900 RELATED ID: 5JI6 RELATED DB: PDB DBREF 5JFR A 110 478 UNP P50579 MAP2_HUMAN 87 455 SEQRES 1 A 369 LYS VAL GLN THR ASP PRO PRO SER VAL PRO ILE CYS ASP SEQRES 2 A 369 LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY GLN GLU CYS SEQRES 3 A 369 GLU TYR PRO PRO THR GLN ASP GLY ARG THR ALA ALA TRP SEQRES 4 A 369 ARG THR THR SER GLU GLU LYS LYS ALA LEU ASP GLN ALA SEQRES 5 A 369 SER GLU GLU ILE TRP ASN ASP PHE ARG GLU ALA ALA GLU SEQRES 6 A 369 ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SER TRP ILE SEQRES 7 A 369 LYS PRO GLY MET THR MET ILE GLU ILE CYS GLU LYS LEU SEQRES 8 A 369 GLU ASP CYS SER ARG LYS LEU ILE LYS GLU ASN GLY LEU SEQRES 9 A 369 ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SER LEU ASN SEQRES 10 A 369 ASN CYS ALA ALA HIS TYR THR PRO ASN ALA GLY ASP THR SEQRES 11 A 369 THR VAL LEU GLN TYR ASP ASP ILE CYS LYS ILE ASP PHE SEQRES 12 A 369 GLY THR HIS ILE SER GLY ARG ILE ILE ASP CYS ALA PHE SEQRES 13 A 369 THR VAL THR PHE ASN PRO LYS TYR ASP THR LEU LEU LYS SEQRES 14 A 369 ALA VAL LYS ASP ALA THR ASN THR GLY ILE LYS CYS ALA SEQRES 15 A 369 GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY GLU ALA ILE SEQRES 16 A 369 GLN GLU VAL MET GLU SER TYR GLU VAL GLU ILE ASP GLY SEQRES 17 A 369 LYS THR TYR GLN VAL LYS PRO ILE ARG ASN LEU ASN GLY SEQRES 18 A 369 HIS SER ILE GLY GLN TYR ARG ILE HIS ALA GLY LYS THR SEQRES 19 A 369 VAL PRO ILE VAL LYS GLY GLY GLU ALA THR ARG MET GLU SEQRES 20 A 369 GLU GLY GLU VAL TYR ALA ILE GLU THR PHE GLY SER THR SEQRES 21 A 369 GLY LYS GLY VAL VAL HIS ASP ASP MET GLU CYS SER HIS SEQRES 22 A 369 TYR MET LYS ASN PHE ASP VAL GLY HIS VAL PRO ILE ARG SEQRES 23 A 369 LEU PRO ARG THR LYS HIS LEU LEU ASN VAL ILE ASN GLU SEQRES 24 A 369 ASN PHE GLY THR LEU ALA PHE CYS ARG ARG TRP LEU ASP SEQRES 25 A 369 ARG LEU GLY GLU SER LYS TYR LEU MET ALA LEU LYS ASN SEQRES 26 A 369 LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR PRO PRO LEU SEQRES 27 A 369 CYS ASP ILE LYS GLY SER TYR THR ALA GLN PHE GLU HIS SEQRES 28 A 369 THR ILE LEU LEU ARG PRO THR CYS LYS GLU VAL VAL SER SEQRES 29 A 369 ARG GLY ASP ASP TYR HET MN A 501 1 HET MN A 502 1 HET DMS A 503 8 HET EDO A 504 4 HET 6KP A 505 23 HETNAM MN MANGANESE (II) ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM 6KP 7-FLUORO-4-(5-METHYL-3H-IMIDAZO[4,5-B]PYRIDIN-6-YL)-2, HETNAM 2 6KP 4-DIHYDROPYRAZOLO[4,3-B]INDOLE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 DMS C2 H6 O S FORMUL 5 EDO C2 H6 O2 FORMUL 6 6KP C16 H11 F N6 FORMUL 7 HOH *340(H2 O) HELIX 1 AA1 PRO A 119 TYR A 124 1 6 HELIX 2 AA2 ALA A 147 SER A 152 1 6 HELIX 3 AA3 SER A 152 SER A 162 1 11 HELIX 4 AA4 SER A 162 ILE A 187 1 26 HELIX 5 AA5 THR A 192 LYS A 209 1 18 HELIX 6 AA6 ASN A 270 LYS A 272 5 3 HELIX 7 AA7 TYR A 273 ALA A 291 1 19 HELIX 8 AA8 ARG A 296 GLU A 309 1 14 HELIX 9 AA9 LEU A 396 PHE A 410 1 15 HELIX 10 AB1 ARG A 417 LEU A 423 1 7 HELIX 11 AB2 TYR A 428 LEU A 438 1 11 SHEET 1 AA1 5 GLN A 133 CYS A 135 0 SHEET 2 AA1 5 LYS A 469 VAL A 471 -1 O VAL A 471 N GLN A 133 SHEET 3 AA1 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA1 5 VAL A 360 SER A 368 -1 N ILE A 363 O HIS A 460 SHEET 5 AA1 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 AA2 6 GLN A 133 CYS A 135 0 SHEET 2 AA2 6 LYS A 469 VAL A 471 -1 O VAL A 471 N GLN A 133 SHEET 3 AA2 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA2 6 VAL A 360 SER A 368 -1 N ILE A 363 O HIS A 460 SHEET 5 AA2 6 GLY A 330 ILE A 333 -1 N HIS A 331 O ALA A 362 SHEET 6 AA2 6 THR A 343 VAL A 344 -1 O VAL A 344 N GLY A 330 SHEET 1 AA3 3 ALA A 215 LEU A 225 0 SHEET 2 AA3 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 AA3 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 AA4 3 CYS A 228 ALA A 230 0 SHEET 2 AA4 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 229 SHEET 3 AA4 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 AA5 2 GLU A 312 ILE A 315 0 SHEET 2 AA5 2 LYS A 318 GLN A 321 -1 O TYR A 320 N VAL A 313 SHEET 1 AA6 3 PHE A 415 CYS A 416 0 SHEET 2 AA6 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 AA6 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.09 LINK OD1 ASP A 251 MN MN A 501 1555 1555 2.05 LINK OD2 ASP A 251 MN MN A 501 1555 1555 2.23 LINK OD1 ASP A 262 MN MN A 501 1555 1555 2.09 LINK OD2 ASP A 262 MN MN A 502 1555 1555 2.18 LINK NE2 HIS A 331 MN MN A 502 1555 1555 2.14 LINK OE1 GLU A 364 MN MN A 502 1555 1555 2.25 LINK OE2 GLU A 459 MN MN A 501 1555 1555 2.06 LINK OE1 GLU A 459 MN MN A 502 1555 1555 2.25 LINK MN MN A 501 O HOH A 609 1555 1555 2.25 LINK MN MN A 501 O HOH A 642 1555 1555 2.09 LINK MN MN A 502 N15 6KP A 505 1555 1555 2.32 LINK MN MN A 502 O HOH A 642 1555 1555 2.10 CISPEP 1 ASP A 114 PRO A 115 0 0.56 SITE 1 AC1 6 ASP A 251 ASP A 262 GLU A 459 MN A 502 SITE 2 AC1 6 HOH A 609 HOH A 642 SITE 1 AC2 7 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC2 7 MN A 501 6KP A 505 HOH A 642 SITE 1 AC3 6 TYR A 383 ARG A 417 LEU A 432 LYS A 433 SITE 2 AC3 6 HOH A 658 HOH A 742 SITE 1 AC4 6 GLY A 190 THR A 192 GLU A 195 GLN A 243 SITE 2 AC4 6 HOH A 620 HOH A 733 SITE 1 AC5 12 PRO A 220 HIS A 231 ASP A 262 HIS A 331 SITE 2 AC5 12 HIS A 339 GLU A 364 HIS A 382 ALA A 414 SITE 3 AC5 12 TYR A 444 MN A 502 HOH A 609 HOH A 642 CRYST1 89.644 100.816 99.445 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010056 0.00000