data_5JFT # _entry.id 5JFT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JFT WWPDB D_1000220509 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JFT _pdbx_database_status.recvd_initial_deposition_date 2016-04-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tucker, M.B.' 1 'MacKenzie, S.H.' 2 'Maciag, J.J.' 3 'Dirscherl, H.' 4 'Swartz, P.D.' 5 'Yoder, J.A.' 6 'Hamilton, P.T.' 7 'Clark, A.C.' 8 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 2076 _citation.page_last 2088 _citation.title 'Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3032 _citation.pdbx_database_id_PubMed 27577093 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tucker, M.B.' 1 primary 'MacKenzie, S.H.' 2 primary 'Maciag, J.J.' 3 primary 'Dirscherl Ackerman, H.' 4 primary 'Swartz, P.' 5 primary 'Yoder, J.A.' 6 primary 'Hamilton, P.T.' 7 primary 'Clay Clark, A.' 8 # _cell.entry_id 5JFT _cell.length_a 56.910 _cell.length_b 77.869 _cell.length_c 135.671 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JFT _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Caspase 3, apoptosis-related cysteine protease a' 28163.037 2 ? ? ? ? 2 polymer syn ACE-ASP-GLU-VAL-ASK 534.946 2 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 130 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Caspase-3 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HAFRYSLNYPNIGHCIIINNKNFDRRTGMNPRNGTDVDAGNVMNVFRKLGYIVKVYNDQTVAQIMQVLTTVAHDDHSRCA SLVCVLLSHGDEGVFFGTDTSVDLKSLTSLFRGDRCPSLVGKPKLFFIQACRGTELDPGVETDHTDHPDIPDGRERIPVE ADFLYAYSTVPGYYSWRNTMTGSWFIQSLCEMMTKYGSELELLQIMTRVNHKVALDFESTSNMPGFDAKKQIPCIVSMLT KEMYFTPSE ; ;HAFRYSLNYPNIGHCIIINNKNFDRRTGMNPRNGTDVDAGNVMNVFRKLGYIVKVYNDQTVAQIMQVLTTVAHDDHSRCA SLVCVLLSHGDEGVFFGTDTSVDLKSLTSLFRGDRCPSLVGKPKLFFIQACRGTELDPGVETDHTDHPDIPDGRERIPVE ADFLYAYSTVPGYYSWRNTMTGSWFIQSLCEMMTKYGSELELLQIMTRVNHKVALDFESTSNMPGFDAKKQIPCIVSMLT KEMYFTPSE ; A,B ? 2 'polypeptide(L)' no yes '(ACE)DEVD(0QE)' XDEVDX F,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 ALA n 1 3 PHE n 1 4 ARG n 1 5 TYR n 1 6 SER n 1 7 LEU n 1 8 ASN n 1 9 TYR n 1 10 PRO n 1 11 ASN n 1 12 ILE n 1 13 GLY n 1 14 HIS n 1 15 CYS n 1 16 ILE n 1 17 ILE n 1 18 ILE n 1 19 ASN n 1 20 ASN n 1 21 LYS n 1 22 ASN n 1 23 PHE n 1 24 ASP n 1 25 ARG n 1 26 ARG n 1 27 THR n 1 28 GLY n 1 29 MET n 1 30 ASN n 1 31 PRO n 1 32 ARG n 1 33 ASN n 1 34 GLY n 1 35 THR n 1 36 ASP n 1 37 VAL n 1 38 ASP n 1 39 ALA n 1 40 GLY n 1 41 ASN n 1 42 VAL n 1 43 MET n 1 44 ASN n 1 45 VAL n 1 46 PHE n 1 47 ARG n 1 48 LYS n 1 49 LEU n 1 50 GLY n 1 51 TYR n 1 52 ILE n 1 53 VAL n 1 54 LYS n 1 55 VAL n 1 56 TYR n 1 57 ASN n 1 58 ASP n 1 59 GLN n 1 60 THR n 1 61 VAL n 1 62 ALA n 1 63 GLN n 1 64 ILE n 1 65 MET n 1 66 GLN n 1 67 VAL n 1 68 LEU n 1 69 THR n 1 70 THR n 1 71 VAL n 1 72 ALA n 1 73 HIS n 1 74 ASP n 1 75 ASP n 1 76 HIS n 1 77 SER n 1 78 ARG n 1 79 CYS n 1 80 ALA n 1 81 SER n 1 82 LEU n 1 83 VAL n 1 84 CYS n 1 85 VAL n 1 86 LEU n 1 87 LEU n 1 88 SER n 1 89 HIS n 1 90 GLY n 1 91 ASP n 1 92 GLU n 1 93 GLY n 1 94 VAL n 1 95 PHE n 1 96 PHE n 1 97 GLY n 1 98 THR n 1 99 ASP n 1 100 THR n 1 101 SER n 1 102 VAL n 1 103 ASP n 1 104 LEU n 1 105 LYS n 1 106 SER n 1 107 LEU n 1 108 THR n 1 109 SER n 1 110 LEU n 1 111 PHE n 1 112 ARG n 1 113 GLY n 1 114 ASP n 1 115 ARG n 1 116 CYS n 1 117 PRO n 1 118 SER n 1 119 LEU n 1 120 VAL n 1 121 GLY n 1 122 LYS n 1 123 PRO n 1 124 LYS n 1 125 LEU n 1 126 PHE n 1 127 PHE n 1 128 ILE n 1 129 GLN n 1 130 ALA n 1 131 CYS n 1 132 ARG n 1 133 GLY n 1 134 THR n 1 135 GLU n 1 136 LEU n 1 137 ASP n 1 138 PRO n 1 139 GLY n 1 140 VAL n 1 141 GLU n 1 142 THR n 1 143 ASP n 1 144 HIS n 1 145 THR n 1 146 ASP n 1 147 HIS n 1 148 PRO n 1 149 ASP n 1 150 ILE n 1 151 PRO n 1 152 ASP n 1 153 GLY n 1 154 ARG n 1 155 GLU n 1 156 ARG n 1 157 ILE n 1 158 PRO n 1 159 VAL n 1 160 GLU n 1 161 ALA n 1 162 ASP n 1 163 PHE n 1 164 LEU n 1 165 TYR n 1 166 ALA n 1 167 TYR n 1 168 SER n 1 169 THR n 1 170 VAL n 1 171 PRO n 1 172 GLY n 1 173 TYR n 1 174 TYR n 1 175 SER n 1 176 TRP n 1 177 ARG n 1 178 ASN n 1 179 THR n 1 180 MET n 1 181 THR n 1 182 GLY n 1 183 SER n 1 184 TRP n 1 185 PHE n 1 186 ILE n 1 187 GLN n 1 188 SER n 1 189 LEU n 1 190 CYS n 1 191 GLU n 1 192 MET n 1 193 MET n 1 194 THR n 1 195 LYS n 1 196 TYR n 1 197 GLY n 1 198 SER n 1 199 GLU n 1 200 LEU n 1 201 GLU n 1 202 LEU n 1 203 LEU n 1 204 GLN n 1 205 ILE n 1 206 MET n 1 207 THR n 1 208 ARG n 1 209 VAL n 1 210 ASN n 1 211 HIS n 1 212 LYS n 1 213 VAL n 1 214 ALA n 1 215 LEU n 1 216 ASP n 1 217 PHE n 1 218 GLU n 1 219 SER n 1 220 THR n 1 221 SER n 1 222 ASN n 1 223 MET n 1 224 PRO n 1 225 GLY n 1 226 PHE n 1 227 ASP n 1 228 ALA n 1 229 LYS n 1 230 LYS n 1 231 GLN n 1 232 ILE n 1 233 PRO n 1 234 CYS n 1 235 ILE n 1 236 VAL n 1 237 SER n 1 238 MET n 1 239 LEU n 1 240 THR n 1 241 LYS n 1 242 GLU n 1 243 MET n 1 244 TYR n 1 245 PHE n 1 246 THR n 1 247 PRO n 1 248 SER n 1 249 GLU n 2 1 ACE n 2 2 ASP n 2 3 GLU n 2 4 VAL n 2 5 ASP n 2 6 0QE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 249 _entity_src_gen.gene_src_common_name Zebrafish _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'casp3a, casp3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Danio rerio' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific ;unidentified 'CNM-group' bacterium HXN600 ; _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 142878 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q98UI8_DANRE Q98UI8 ? 1 ;HAFRYSLNYPNIGHCIIINNKNFDRRTGMNPRNGTDVDAGNVMNVFRKLGYIVKVYNDQTVAQIMQVLTTVAHDDHSRCA SLVCVLLSHGDEGVFFGTDTSVDLKSLTSLFRGDRCPSLVGKPKLFFIQACRGTELDPGVETDHTDHPDIPDGRERIPVE ADFLYAYSTVPGYYSWRNTMTGSWFIQSLCEMMTKYGSELELLQIMTRVNHKVALDFESTSNMPGFDAKKQIPCIVSMLT KEMYFTP ; 36 2 PDB 5JFT 5JFT ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5JFT A 1 ? 247 ? Q98UI8 36 ? 282 ? 36 282 2 1 5JFT B 1 ? 247 ? Q98UI8 36 ? 282 ? 36 282 3 2 5JFT F 1 ? 6 ? 5JFT 1 ? 6 ? 1 6 4 2 5JFT C 1 ? 6 ? 5JFT 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5JFT SER A 248 ? UNP Q98UI8 ? ? 'expression tag' 283 1 1 5JFT GLU A 249 ? UNP Q98UI8 ? ? 'expression tag' 284 2 2 5JFT SER B 248 ? UNP Q98UI8 ? ? 'expression tag' 283 3 2 5JFT GLU B 249 ? UNP Q98UI8 ? ? 'expression tag' 284 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0QE non-polymer . chloromethane 'Chloro Methyl group' 'C H3 Cl' 50.488 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JFT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystals were obtained at 18 deg. C by the hanging drop vapor diffusion method using 4 uL drops that contained equal volumes of protein and reservoir solutions over a 0.5 mL solution of 100 mM sodium citrate, pH 5.1, 17.5% PEG 6000, 10 mM DTT, and 3 mM NaN3. Crystals appeared within 14 days and were briefly immersed in cryogenic solution containing 10% 2-methylpentane-2,4-diol and 90% reservoir solution. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-06-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Insertion Device' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5JFT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.918 _reflns.d_resolution_high 2.282 _reflns.number_obs 27818 _reflns.number_all ? _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 3.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.700 # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5JFT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 27818 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.92 _refine.ls_d_res_high 2.28 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.180 _refine.ls_number_reflns_R_free 1998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Authors state that there is a fundamental incompatibility in the naming of the inhibitor structure and the refinement program cannot be made to establish a bond that exists between the inhibitor and the protein at the active site cysteine. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.280 _refine.pdbx_overall_phase_error 24.440 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3750 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 3896 _refine_hist.d_res_high 2.28 _refine_hist.d_res_low 33.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 3872 'X-RAY DIFFRACTION' ? f_angle_d 0.890 ? ? 5254 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.332 ? ? 2310 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 594 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 675 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2820 2.3391 1764 0.2669 96.00 0.3270 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.3391 2.4023 1783 0.2262 97.00 0.3288 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.4023 2.4730 1802 0.2105 98.00 0.2723 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.4730 2.5528 1812 0.2036 99.00 0.2884 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.5528 2.6440 1817 0.1974 99.00 0.2751 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.6440 2.7498 1818 0.2008 99.00 0.2981 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.7498 2.8749 1839 0.1906 99.00 0.2830 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.8749 3.0264 1846 0.1849 99.00 0.2949 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.0264 3.2158 1843 0.1783 99.00 0.2253 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.2158 3.4639 1852 0.1676 100.00 0.2074 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.4639 3.8121 1865 0.1382 100.00 0.2133 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.8121 4.3627 1894 0.1344 100.00 0.1863 . . 145 . . . . 'X-RAY DIFFRACTION' . 4.3627 5.4928 1888 0.1432 100.00 0.1531 . . 148 . . . . 'X-RAY DIFFRACTION' . 5.4928 33.9215 1997 0.2053 99.00 0.2340 . . 153 . . . . # _struct.entry_id 5JFT _struct.title 'Zebra Fish Caspase-3' _struct.pdbx_descriptor 'Caspase 3, apoptosis-related cysteine protease a, ACE-ASP-GLU-VAL-ASK' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JFT _struct_keywords.text 'phage display substrate library, substrate recognition, Danio rerio, apoptosis, HYDROLASE, Hydrolase-Hydrolase Inhibitor complex' _struct_keywords.pdbx_keywords 'Hydrolase/Hydrolase Inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 24 ? GLY A 28 ? ASP A 59 GLY A 63 5 ? 5 HELX_P HELX_P2 AA2 GLY A 34 ? LEU A 49 ? GLY A 69 LEU A 84 1 ? 16 HELX_P HELX_P3 AA3 THR A 60 ? ASP A 74 ? THR A 95 ASP A 109 1 ? 15 HELX_P HELX_P4 AA4 LEU A 104 ? SER A 109 ? LEU A 139 SER A 144 1 ? 6 HELX_P HELX_P5 AA5 LEU A 110 ? ARG A 112 ? LEU A 145 ARG A 147 5 ? 3 HELX_P HELX_P6 AA6 CYS A 116 ? VAL A 120 ? CYS A 151 VAL A 155 5 ? 5 HELX_P HELX_P7 AA7 TRP A 184 ? GLY A 197 ? TRP A 219 GLY A 232 1 ? 14 HELX_P HELX_P8 AA8 GLU A 201 ? PHE A 217 ? GLU A 236 PHE A 252 1 ? 17 HELX_P HELX_P9 AA9 ASP B 24 ? GLY B 28 ? ASP B 59 GLY B 63 5 ? 5 HELX_P HELX_P10 AB1 GLY B 34 ? LEU B 49 ? GLY B 69 LEU B 84 1 ? 16 HELX_P HELX_P11 AB2 THR B 60 ? ASP B 74 ? THR B 95 ASP B 109 1 ? 15 HELX_P HELX_P12 AB3 LEU B 104 ? SER B 109 ? LEU B 139 SER B 144 1 ? 6 HELX_P HELX_P13 AB4 LEU B 110 ? ARG B 112 ? LEU B 145 ARG B 147 5 ? 3 HELX_P HELX_P14 AB5 CYS B 116 ? VAL B 120 ? CYS B 151 VAL B 155 5 ? 5 HELX_P HELX_P15 AB6 TRP B 184 ? GLY B 197 ? TRP B 219 GLY B 232 1 ? 14 HELX_P HELX_P16 AB7 GLU B 201 ? PHE B 217 ? GLU B 236 PHE B 252 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? C ACE 1 C ? ? ? 1_555 C ASP 2 N ? ? F ACE 1 F ASP 2 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale both ? C ASP 5 C ? ? ? 1_555 C 0QE 6 C1 ? ? F ASP 5 F 0QE 6 1_555 ? ? ? ? ? ? ? 1.539 ? covale3 covale both ? D ACE 1 C ? ? ? 1_555 D ASP 2 N ? ? C ACE 1 C ASP 2 1_555 ? ? ? ? ? ? ? 1.342 ? covale4 covale both ? D ASP 5 C ? ? ? 1_555 D 0QE 6 C1 ? ? C ASP 5 C 0QE 6 1_555 ? ? ? ? ? ? ? 1.526 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 12 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? parallel AA1 9 10 ? parallel AA1 10 11 ? parallel AA1 11 12 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 52 ? ASN A 57 ? ILE A 87 ASN A 92 AA1 2 ASN A 11 ? ASN A 19 ? ASN A 46 ASN A 54 AA1 3 CYS A 79 ? LEU A 87 ? CYS A 114 LEU A 122 AA1 4 LYS A 124 ? GLN A 129 ? LYS A 159 GLN A 164 AA1 5 PHE A 163 ? TYR A 167 ? PHE A 198 TYR A 202 AA1 6 CYS A 234 ? SER A 237 ? CYS A 269 SER A 272 AA1 7 CYS B 234 ? SER B 237 ? CYS B 269 SER B 272 AA1 8 PHE B 163 ? TYR B 167 ? PHE B 198 TYR B 202 AA1 9 LYS B 124 ? GLN B 129 ? LYS B 159 GLN B 164 AA1 10 CYS B 79 ? LEU B 87 ? CYS B 114 LEU B 122 AA1 11 ASN B 11 ? ASN B 19 ? ASN B 46 ASN B 54 AA1 12 ILE B 52 ? ASN B 57 ? ILE B 87 ASN B 92 AA2 1 GLY A 90 ? ASP A 91 ? GLY A 125 ASP A 126 AA2 2 VAL A 94 ? PHE A 96 ? VAL A 129 PHE A 131 AA2 3 SER A 101 ? ASP A 103 ? SER A 136 ASP A 138 AA3 1 GLY A 133 ? GLU A 135 ? GLY A 168 GLU A 170 AA3 2 GLY A 172 ? TYR A 173 ? GLY A 207 TYR A 208 AA4 1 VAL A 140 ? GLU A 141 ? VAL A 175 GLU A 176 AA4 2 ARG B 156 ? ILE B 157 ? ARG B 191 ILE B 192 AA5 1 ARG A 156 ? ILE A 157 ? ARG A 191 ILE A 192 AA5 2 VAL B 140 ? GLU B 141 ? VAL B 175 GLU B 176 AA6 1 GLY A 182 ? SER A 183 ? GLY A 217 SER A 218 AA6 2 TRP A 176 ? ASN A 178 ? TRP A 211 ASN A 213 AA6 3 GLU C 3 ? VAL C 4 ? GLU F 3 VAL F 4 AA7 1 GLY B 90 ? ASP B 91 ? GLY B 125 ASP B 126 AA7 2 VAL B 94 ? PHE B 96 ? VAL B 129 PHE B 131 AA7 3 SER B 101 ? ASP B 103 ? SER B 136 ASP B 138 AA8 1 GLY B 182 ? SER B 183 ? GLY B 217 SER B 218 AA8 2 TRP B 176 ? ASN B 178 ? TRP B 211 ASN B 213 AA8 3 GLU D 3 ? VAL D 4 ? GLU C 3 VAL C 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 56 ? O TYR A 91 N ILE A 17 ? N ILE A 52 AA1 2 3 N ILE A 16 ? N ILE A 51 O VAL A 85 ? O VAL A 120 AA1 3 4 N LEU A 86 ? N LEU A 121 O GLN A 129 ? O GLN A 164 AA1 4 5 N PHE A 126 ? N PHE A 161 O ALA A 166 ? O ALA A 201 AA1 5 6 N TYR A 165 ? N TYR A 200 O VAL A 236 ? O VAL A 271 AA1 6 7 N ILE A 235 ? N ILE A 270 O SER B 237 ? O SER B 272 AA1 7 8 O VAL B 236 ? O VAL B 271 N TYR B 165 ? N TYR B 200 AA1 8 9 O ALA B 166 ? O ALA B 201 N PHE B 126 ? N PHE B 161 AA1 9 10 O LEU B 125 ? O LEU B 160 N LEU B 82 ? N LEU B 117 AA1 10 11 O VAL B 85 ? O VAL B 120 N ILE B 16 ? N ILE B 51 AA1 11 12 N ILE B 17 ? N ILE B 52 O TYR B 56 ? O TYR B 91 AA2 1 2 N ASP A 91 ? N ASP A 126 O VAL A 94 ? O VAL A 129 AA2 2 3 N PHE A 95 ? N PHE A 130 O VAL A 102 ? O VAL A 137 AA3 1 2 N GLU A 135 ? N GLU A 170 O GLY A 172 ? O GLY A 207 AA4 1 2 N VAL A 140 ? N VAL A 175 O ILE B 157 ? O ILE B 192 AA5 1 2 N ILE A 157 ? N ILE A 192 O VAL B 140 ? O VAL B 175 AA6 1 2 O GLY A 182 ? O GLY A 217 N ASN A 178 ? N ASN A 213 AA6 2 3 N ARG A 177 ? N ARG A 212 O GLU C 3 ? O GLU F 3 AA7 1 2 N ASP B 91 ? N ASP B 126 O VAL B 94 ? O VAL B 129 AA7 2 3 N PHE B 95 ? N PHE B 130 O VAL B 102 ? O VAL B 137 AA8 1 2 O GLY B 182 ? O GLY B 217 N ASN B 178 ? N ASN B 213 AA8 2 3 N ARG B 177 ? N ARG B 212 O GLU D 3 ? O GLU C 3 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MPD 301 ? 5 'binding site for residue MPD A 301' AC2 Software A MRD 302 ? 4 'binding site for residue MRD A 302' AC3 Software C ACE 1 ? 7 'binding site for Di-peptide ACE C 1 and ASP C 2' AC4 Software C ASP 5 ? 10 'binding site for Di-peptide ASP C 5 and 0QE C 6' AC5 Software F ACE 1 ? 8 'binding site for Di-peptide ACE F 1 and ASP F 2' AC6 Software F ASP 5 ? 8 'binding site for Di-peptide ASP F 5 and 0QE F 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 MET A 192 ? MET A 227 . ? 1_555 ? 2 AC1 5 LYS A 195 ? LYS A 230 . ? 1_555 ? 3 AC1 5 TYR A 196 ? TYR A 231 . ? 1_555 ? 4 AC1 5 ARG A 208 ? ARG A 243 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 439 . ? 1_555 ? 6 AC2 4 LYS A 105 ? LYS A 140 . ? 1_555 ? 7 AC2 4 THR A 108 ? THR A 143 . ? 1_555 ? 8 AC2 4 TYR A 167 ? TYR A 202 . ? 1_555 ? 9 AC2 4 VAL B 170 ? VAL B 205 . ? 1_555 ? 10 AC3 7 ARG B 177 ? ARG B 212 . ? 1_555 ? 11 AC3 7 ASN B 178 ? ASN B 213 . ? 1_555 ? 12 AC3 7 THR B 179 ? THR B 214 . ? 1_555 ? 13 AC3 7 GLU B 218 ? GLU B 253 . ? 1_555 ? 14 AC3 7 SER B 219 ? SER B 254 . ? 1_555 ? 15 AC3 7 THR B 220 ? THR B 255 . ? 1_555 ? 16 AC3 7 GLU D 3 ? GLU C 3 . ? 1_555 ? 17 AC4 10 ARG B 32 ? ARG B 67 . ? 1_555 ? 18 AC4 10 SER B 88 ? SER B 123 . ? 1_555 ? 19 AC4 10 HIS B 89 ? HIS B 124 . ? 1_555 ? 20 AC4 10 GLY B 90 ? GLY B 125 . ? 1_555 ? 21 AC4 10 GLN B 129 ? GLN B 164 . ? 1_555 ? 22 AC4 10 ALA B 130 ? ALA B 165 . ? 1_555 ? 23 AC4 10 CYS B 131 ? CYS B 166 . ? 1_555 ? 24 AC4 10 SER B 175 ? SER B 210 . ? 1_555 ? 25 AC4 10 ARG B 177 ? ARG B 212 . ? 1_555 ? 26 AC4 10 VAL D 4 ? VAL C 4 . ? 1_555 ? 27 AC5 8 ARG A 177 ? ARG A 212 . ? 1_555 ? 28 AC5 8 ASN A 178 ? ASN A 213 . ? 1_555 ? 29 AC5 8 THR A 179 ? THR A 214 . ? 1_555 ? 30 AC5 8 SER A 219 ? SER A 254 . ? 1_555 ? 31 AC5 8 THR A 220 ? THR A 255 . ? 1_555 ? 32 AC5 8 GLU C 3 ? GLU F 3 . ? 1_555 ? 33 AC5 8 HOH I . ? HOH F 101 . ? 1_555 ? 34 AC5 8 HOH I . ? HOH F 102 . ? 1_555 ? 35 AC6 8 ARG A 32 ? ARG A 67 . ? 1_555 ? 36 AC6 8 HIS A 89 ? HIS A 124 . ? 1_555 ? 37 AC6 8 GLY A 90 ? GLY A 125 . ? 1_555 ? 38 AC6 8 GLN A 129 ? GLN A 164 . ? 1_555 ? 39 AC6 8 CYS A 131 ? CYS A 166 . ? 1_555 ? 40 AC6 8 SER A 175 ? SER A 210 . ? 1_555 ? 41 AC6 8 ARG A 177 ? ARG A 212 . ? 1_555 ? 42 AC6 8 VAL C 4 ? VAL F 4 . ? 1_555 ? # _atom_sites.entry_id 5JFT _atom_sites.fract_transf_matrix[1][1] 0.017572 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012842 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007371 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text ;Caspase should be connected to the chloromethyl ketone residual terminus of the inhibitor through hemithioacetal bond, but the model does not reflect the ideal hemithioacetal geometry. ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 36 36 HIS HIS A . n A 1 2 ALA 2 37 37 ALA ALA A . n A 1 3 PHE 3 38 38 PHE PHE A . n A 1 4 ARG 4 39 39 ARG ARG A . n A 1 5 TYR 5 40 40 TYR TYR A . n A 1 6 SER 6 41 41 SER SER A . n A 1 7 LEU 7 42 42 LEU LEU A . n A 1 8 ASN 8 43 43 ASN ASN A . n A 1 9 TYR 9 44 44 TYR TYR A . n A 1 10 PRO 10 45 45 PRO PRO A . n A 1 11 ASN 11 46 46 ASN ASN A . n A 1 12 ILE 12 47 47 ILE ILE A . n A 1 13 GLY 13 48 48 GLY GLY A . n A 1 14 HIS 14 49 49 HIS HIS A . n A 1 15 CYS 15 50 50 CYS CYS A . n A 1 16 ILE 16 51 51 ILE ILE A . n A 1 17 ILE 17 52 52 ILE ILE A . n A 1 18 ILE 18 53 53 ILE ILE A . n A 1 19 ASN 19 54 54 ASN ASN A . n A 1 20 ASN 20 55 55 ASN ASN A . n A 1 21 LYS 21 56 56 LYS LYS A . n A 1 22 ASN 22 57 57 ASN ASN A . n A 1 23 PHE 23 58 58 PHE PHE A . n A 1 24 ASP 24 59 59 ASP ASP A . n A 1 25 ARG 25 60 60 ARG ARG A . n A 1 26 ARG 26 61 61 ARG ARG A . n A 1 27 THR 27 62 62 THR THR A . n A 1 28 GLY 28 63 63 GLY GLY A . n A 1 29 MET 29 64 64 MET MET A . n A 1 30 ASN 30 65 65 ASN ASN A . n A 1 31 PRO 31 66 66 PRO PRO A . n A 1 32 ARG 32 67 67 ARG ARG A . n A 1 33 ASN 33 68 68 ASN ASN A . n A 1 34 GLY 34 69 69 GLY GLY A . n A 1 35 THR 35 70 70 THR THR A . n A 1 36 ASP 36 71 71 ASP ASP A . n A 1 37 VAL 37 72 72 VAL VAL A . n A 1 38 ASP 38 73 73 ASP ASP A . n A 1 39 ALA 39 74 74 ALA ALA A . n A 1 40 GLY 40 75 75 GLY GLY A . n A 1 41 ASN 41 76 76 ASN ASN A . n A 1 42 VAL 42 77 77 VAL VAL A . n A 1 43 MET 43 78 78 MET MET A . n A 1 44 ASN 44 79 79 ASN ASN A . n A 1 45 VAL 45 80 80 VAL VAL A . n A 1 46 PHE 46 81 81 PHE PHE A . n A 1 47 ARG 47 82 82 ARG ARG A . n A 1 48 LYS 48 83 83 LYS LYS A . n A 1 49 LEU 49 84 84 LEU LEU A . n A 1 50 GLY 50 85 85 GLY GLY A . n A 1 51 TYR 51 86 86 TYR TYR A . n A 1 52 ILE 52 87 87 ILE ILE A . n A 1 53 VAL 53 88 88 VAL VAL A . n A 1 54 LYS 54 89 89 LYS LYS A . n A 1 55 VAL 55 90 90 VAL VAL A . n A 1 56 TYR 56 91 91 TYR TYR A . n A 1 57 ASN 57 92 92 ASN ASN A . n A 1 58 ASP 58 93 93 ASP ASP A . n A 1 59 GLN 59 94 94 GLN GLN A . n A 1 60 THR 60 95 95 THR THR A . n A 1 61 VAL 61 96 96 VAL VAL A . n A 1 62 ALA 62 97 97 ALA ALA A . n A 1 63 GLN 63 98 98 GLN GLN A . n A 1 64 ILE 64 99 99 ILE ILE A . n A 1 65 MET 65 100 100 MET MET A . n A 1 66 GLN 66 101 101 GLN GLN A . n A 1 67 VAL 67 102 102 VAL VAL A . n A 1 68 LEU 68 103 103 LEU LEU A . n A 1 69 THR 69 104 104 THR THR A . n A 1 70 THR 70 105 105 THR THR A . n A 1 71 VAL 71 106 106 VAL VAL A . n A 1 72 ALA 72 107 107 ALA ALA A . n A 1 73 HIS 73 108 108 HIS HIS A . n A 1 74 ASP 74 109 109 ASP ASP A . n A 1 75 ASP 75 110 110 ASP ASP A . n A 1 76 HIS 76 111 111 HIS HIS A . n A 1 77 SER 77 112 112 SER SER A . n A 1 78 ARG 78 113 113 ARG ARG A . n A 1 79 CYS 79 114 114 CYS CYS A . n A 1 80 ALA 80 115 115 ALA ALA A . n A 1 81 SER 81 116 116 SER SER A . n A 1 82 LEU 82 117 117 LEU LEU A . n A 1 83 VAL 83 118 118 VAL VAL A . n A 1 84 CYS 84 119 119 CYS CYS A . n A 1 85 VAL 85 120 120 VAL VAL A . n A 1 86 LEU 86 121 121 LEU LEU A . n A 1 87 LEU 87 122 122 LEU LEU A . n A 1 88 SER 88 123 123 SER SER A . n A 1 89 HIS 89 124 124 HIS HIS A . n A 1 90 GLY 90 125 125 GLY GLY A . n A 1 91 ASP 91 126 126 ASP ASP A . n A 1 92 GLU 92 127 127 GLU GLU A . n A 1 93 GLY 93 128 128 GLY GLY A . n A 1 94 VAL 94 129 129 VAL VAL A . n A 1 95 PHE 95 130 130 PHE PHE A . n A 1 96 PHE 96 131 131 PHE PHE A . n A 1 97 GLY 97 132 132 GLY GLY A . n A 1 98 THR 98 133 133 THR THR A . n A 1 99 ASP 99 134 134 ASP ASP A . n A 1 100 THR 100 135 135 THR THR A . n A 1 101 SER 101 136 136 SER SER A . n A 1 102 VAL 102 137 137 VAL VAL A . n A 1 103 ASP 103 138 138 ASP ASP A . n A 1 104 LEU 104 139 139 LEU LEU A . n A 1 105 LYS 105 140 140 LYS LYS A . n A 1 106 SER 106 141 141 SER SER A . n A 1 107 LEU 107 142 142 LEU LEU A . n A 1 108 THR 108 143 143 THR THR A . n A 1 109 SER 109 144 144 SER SER A . n A 1 110 LEU 110 145 145 LEU LEU A . n A 1 111 PHE 111 146 146 PHE PHE A . n A 1 112 ARG 112 147 147 ARG ARG A . n A 1 113 GLY 113 148 148 GLY GLY A . n A 1 114 ASP 114 149 149 ASP ASP A . n A 1 115 ARG 115 150 150 ARG ARG A . n A 1 116 CYS 116 151 151 CYS CYS A . n A 1 117 PRO 117 152 152 PRO PRO A . n A 1 118 SER 118 153 153 SER SER A . n A 1 119 LEU 119 154 154 LEU LEU A . n A 1 120 VAL 120 155 155 VAL VAL A . n A 1 121 GLY 121 156 156 GLY GLY A . n A 1 122 LYS 122 157 157 LYS LYS A . n A 1 123 PRO 123 158 158 PRO PRO A . n A 1 124 LYS 124 159 159 LYS LYS A . n A 1 125 LEU 125 160 160 LEU LEU A . n A 1 126 PHE 126 161 161 PHE PHE A . n A 1 127 PHE 127 162 162 PHE PHE A . n A 1 128 ILE 128 163 163 ILE ILE A . n A 1 129 GLN 129 164 164 GLN GLN A . n A 1 130 ALA 130 165 165 ALA ALA A . n A 1 131 CYS 131 166 166 CYS CYS A . n A 1 132 ARG 132 167 167 ARG ARG A . n A 1 133 GLY 133 168 168 GLY GLY A . n A 1 134 THR 134 169 169 THR THR A . n A 1 135 GLU 135 170 170 GLU GLU A . n A 1 136 LEU 136 171 171 LEU LEU A . n A 1 137 ASP 137 172 172 ASP ASP A . n A 1 138 PRO 138 173 173 PRO PRO A . n A 1 139 GLY 139 174 174 GLY GLY A . n A 1 140 VAL 140 175 175 VAL VAL A . n A 1 141 GLU 141 176 176 GLU GLU A . n A 1 142 THR 142 177 177 THR THR A . n A 1 143 ASP 143 178 178 ASP ASP A . n A 1 144 HIS 144 179 ? ? ? A . n A 1 145 THR 145 180 ? ? ? A . n A 1 146 ASP 146 181 ? ? ? A . n A 1 147 HIS 147 182 ? ? ? A . n A 1 148 PRO 148 183 ? ? ? A . n A 1 149 ASP 149 184 ? ? ? A . n A 1 150 ILE 150 185 ? ? ? A . n A 1 151 PRO 151 186 ? ? ? A . n A 1 152 ASP 152 187 ? ? ? A . n A 1 153 GLY 153 188 ? ? ? A . n A 1 154 ARG 154 189 ? ? ? A . n A 1 155 GLU 155 190 190 GLU GLU A . n A 1 156 ARG 156 191 191 ARG ARG A . n A 1 157 ILE 157 192 192 ILE ILE A . n A 1 158 PRO 158 193 193 PRO PRO A . n A 1 159 VAL 159 194 194 VAL VAL A . n A 1 160 GLU 160 195 195 GLU GLU A . n A 1 161 ALA 161 196 196 ALA ALA A . n A 1 162 ASP 162 197 197 ASP ASP A . n A 1 163 PHE 163 198 198 PHE PHE A . n A 1 164 LEU 164 199 199 LEU LEU A . n A 1 165 TYR 165 200 200 TYR TYR A . n A 1 166 ALA 166 201 201 ALA ALA A . n A 1 167 TYR 167 202 202 TYR TYR A . n A 1 168 SER 168 203 203 SER SER A . n A 1 169 THR 169 204 204 THR THR A . n A 1 170 VAL 170 205 205 VAL VAL A . n A 1 171 PRO 171 206 206 PRO PRO A . n A 1 172 GLY 172 207 207 GLY GLY A . n A 1 173 TYR 173 208 208 TYR TYR A . n A 1 174 TYR 174 209 209 TYR TYR A . n A 1 175 SER 175 210 210 SER SER A . n A 1 176 TRP 176 211 211 TRP TRP A . n A 1 177 ARG 177 212 212 ARG ARG A . n A 1 178 ASN 178 213 213 ASN ASN A . n A 1 179 THR 179 214 214 THR THR A . n A 1 180 MET 180 215 215 MET MET A . n A 1 181 THR 181 216 216 THR THR A . n A 1 182 GLY 182 217 217 GLY GLY A . n A 1 183 SER 183 218 218 SER SER A . n A 1 184 TRP 184 219 219 TRP TRP A . n A 1 185 PHE 185 220 220 PHE PHE A . n A 1 186 ILE 186 221 221 ILE ILE A . n A 1 187 GLN 187 222 222 GLN GLN A . n A 1 188 SER 188 223 223 SER SER A . n A 1 189 LEU 189 224 224 LEU LEU A . n A 1 190 CYS 190 225 225 CYS CYS A . n A 1 191 GLU 191 226 226 GLU GLU A . n A 1 192 MET 192 227 227 MET MET A . n A 1 193 MET 193 228 228 MET MET A . n A 1 194 THR 194 229 229 THR THR A . n A 1 195 LYS 195 230 230 LYS LYS A . n A 1 196 TYR 196 231 231 TYR TYR A . n A 1 197 GLY 197 232 232 GLY GLY A . n A 1 198 SER 198 233 233 SER SER A . n A 1 199 GLU 199 234 234 GLU GLU A . n A 1 200 LEU 200 235 235 LEU LEU A . n A 1 201 GLU 201 236 236 GLU GLU A . n A 1 202 LEU 202 237 237 LEU LEU A . n A 1 203 LEU 203 238 238 LEU LEU A . n A 1 204 GLN 204 239 239 GLN GLN A . n A 1 205 ILE 205 240 240 ILE ILE A . n A 1 206 MET 206 241 241 MET MET A . n A 1 207 THR 207 242 242 THR THR A . n A 1 208 ARG 208 243 243 ARG ARG A . n A 1 209 VAL 209 244 244 VAL VAL A . n A 1 210 ASN 210 245 245 ASN ASN A . n A 1 211 HIS 211 246 246 HIS HIS A . n A 1 212 LYS 212 247 247 LYS LYS A . n A 1 213 VAL 213 248 248 VAL VAL A . n A 1 214 ALA 214 249 249 ALA ALA A . n A 1 215 LEU 215 250 250 LEU LEU A . n A 1 216 ASP 216 251 251 ASP ASP A . n A 1 217 PHE 217 252 252 PHE PHE A . n A 1 218 GLU 218 253 253 GLU GLU A . n A 1 219 SER 219 254 254 SER SER A . n A 1 220 THR 220 255 255 THR THR A . n A 1 221 SER 221 256 256 SER SER A . n A 1 222 ASN 222 257 257 ASN ASN A . n A 1 223 MET 223 258 258 MET MET A . n A 1 224 PRO 224 259 259 PRO PRO A . n A 1 225 GLY 225 260 260 GLY GLY A . n A 1 226 PHE 226 261 261 PHE PHE A . n A 1 227 ASP 227 262 262 ASP ASP A . n A 1 228 ALA 228 263 263 ALA ALA A . n A 1 229 LYS 229 264 264 LYS LYS A . n A 1 230 LYS 230 265 265 LYS LYS A . n A 1 231 GLN 231 266 266 GLN GLN A . n A 1 232 ILE 232 267 267 ILE ILE A . n A 1 233 PRO 233 268 268 PRO PRO A . n A 1 234 CYS 234 269 269 CYS CYS A . n A 1 235 ILE 235 270 270 ILE ILE A . n A 1 236 VAL 236 271 271 VAL VAL A . n A 1 237 SER 237 272 272 SER SER A . n A 1 238 MET 238 273 273 MET MET A . n A 1 239 LEU 239 274 274 LEU LEU A . n A 1 240 THR 240 275 275 THR THR A . n A 1 241 LYS 241 276 276 LYS LYS A . n A 1 242 GLU 242 277 277 GLU GLU A . n A 1 243 MET 243 278 278 MET MET A . n A 1 244 TYR 244 279 279 TYR TYR A . n A 1 245 PHE 245 280 280 PHE PHE A . n A 1 246 THR 246 281 281 THR THR A . n A 1 247 PRO 247 282 282 PRO PRO A . n A 1 248 SER 248 283 283 SER SER A . n A 1 249 GLU 249 284 284 GLU GLU A . n B 1 1 HIS 1 36 ? ? ? B . n B 1 2 ALA 2 37 37 ALA ALA B . n B 1 3 PHE 3 38 38 PHE PHE B . n B 1 4 ARG 4 39 39 ARG ARG B . n B 1 5 TYR 5 40 40 TYR TYR B . n B 1 6 SER 6 41 41 SER SER B . n B 1 7 LEU 7 42 42 LEU LEU B . n B 1 8 ASN 8 43 43 ASN ASN B . n B 1 9 TYR 9 44 44 TYR TYR B . n B 1 10 PRO 10 45 45 PRO PRO B . n B 1 11 ASN 11 46 46 ASN ASN B . n B 1 12 ILE 12 47 47 ILE ILE B . n B 1 13 GLY 13 48 48 GLY GLY B . n B 1 14 HIS 14 49 49 HIS HIS B . n B 1 15 CYS 15 50 50 CYS CYS B . n B 1 16 ILE 16 51 51 ILE ILE B . n B 1 17 ILE 17 52 52 ILE ILE B . n B 1 18 ILE 18 53 53 ILE ILE B . n B 1 19 ASN 19 54 54 ASN ASN B . n B 1 20 ASN 20 55 55 ASN ASN B . n B 1 21 LYS 21 56 56 LYS LYS B . n B 1 22 ASN 22 57 57 ASN ASN B . n B 1 23 PHE 23 58 58 PHE PHE B . n B 1 24 ASP 24 59 59 ASP ASP B . n B 1 25 ARG 25 60 60 ARG ARG B . n B 1 26 ARG 26 61 61 ARG ARG B . n B 1 27 THR 27 62 62 THR THR B . n B 1 28 GLY 28 63 63 GLY GLY B . n B 1 29 MET 29 64 64 MET MET B . n B 1 30 ASN 30 65 65 ASN ASN B . n B 1 31 PRO 31 66 66 PRO PRO B . n B 1 32 ARG 32 67 67 ARG ARG B . n B 1 33 ASN 33 68 68 ASN ASN B . n B 1 34 GLY 34 69 69 GLY GLY B . n B 1 35 THR 35 70 70 THR THR B . n B 1 36 ASP 36 71 71 ASP ASP B . n B 1 37 VAL 37 72 72 VAL VAL B . n B 1 38 ASP 38 73 73 ASP ASP B . n B 1 39 ALA 39 74 74 ALA ALA B . n B 1 40 GLY 40 75 75 GLY GLY B . n B 1 41 ASN 41 76 76 ASN ASN B . n B 1 42 VAL 42 77 77 VAL VAL B . n B 1 43 MET 43 78 78 MET MET B . n B 1 44 ASN 44 79 79 ASN ASN B . n B 1 45 VAL 45 80 80 VAL VAL B . n B 1 46 PHE 46 81 81 PHE PHE B . n B 1 47 ARG 47 82 82 ARG ARG B . n B 1 48 LYS 48 83 83 LYS LYS B . n B 1 49 LEU 49 84 84 LEU LEU B . n B 1 50 GLY 50 85 85 GLY GLY B . n B 1 51 TYR 51 86 86 TYR TYR B . n B 1 52 ILE 52 87 87 ILE ILE B . n B 1 53 VAL 53 88 88 VAL VAL B . n B 1 54 LYS 54 89 89 LYS LYS B . n B 1 55 VAL 55 90 90 VAL VAL B . n B 1 56 TYR 56 91 91 TYR TYR B . n B 1 57 ASN 57 92 92 ASN ASN B . n B 1 58 ASP 58 93 93 ASP ASP B . n B 1 59 GLN 59 94 94 GLN GLN B . n B 1 60 THR 60 95 95 THR THR B . n B 1 61 VAL 61 96 96 VAL VAL B . n B 1 62 ALA 62 97 97 ALA ALA B . n B 1 63 GLN 63 98 98 GLN GLN B . n B 1 64 ILE 64 99 99 ILE ILE B . n B 1 65 MET 65 100 100 MET MET B . n B 1 66 GLN 66 101 101 GLN GLN B . n B 1 67 VAL 67 102 102 VAL VAL B . n B 1 68 LEU 68 103 103 LEU LEU B . n B 1 69 THR 69 104 104 THR THR B . n B 1 70 THR 70 105 105 THR THR B . n B 1 71 VAL 71 106 106 VAL VAL B . n B 1 72 ALA 72 107 107 ALA ALA B . n B 1 73 HIS 73 108 108 HIS HIS B . n B 1 74 ASP 74 109 109 ASP ASP B . n B 1 75 ASP 75 110 110 ASP ASP B . n B 1 76 HIS 76 111 111 HIS HIS B . n B 1 77 SER 77 112 112 SER SER B . n B 1 78 ARG 78 113 113 ARG ARG B . n B 1 79 CYS 79 114 114 CYS CYS B . n B 1 80 ALA 80 115 115 ALA ALA B . n B 1 81 SER 81 116 116 SER SER B . n B 1 82 LEU 82 117 117 LEU LEU B . n B 1 83 VAL 83 118 118 VAL VAL B . n B 1 84 CYS 84 119 119 CYS CYS B . n B 1 85 VAL 85 120 120 VAL VAL B . n B 1 86 LEU 86 121 121 LEU LEU B . n B 1 87 LEU 87 122 122 LEU LEU B . n B 1 88 SER 88 123 123 SER SER B . n B 1 89 HIS 89 124 124 HIS HIS B . n B 1 90 GLY 90 125 125 GLY GLY B . n B 1 91 ASP 91 126 126 ASP ASP B . n B 1 92 GLU 92 127 127 GLU GLU B . n B 1 93 GLY 93 128 128 GLY GLY B . n B 1 94 VAL 94 129 129 VAL VAL B . n B 1 95 PHE 95 130 130 PHE PHE B . n B 1 96 PHE 96 131 131 PHE PHE B . n B 1 97 GLY 97 132 132 GLY GLY B . n B 1 98 THR 98 133 133 THR THR B . n B 1 99 ASP 99 134 134 ASP ASP B . n B 1 100 THR 100 135 135 THR THR B . n B 1 101 SER 101 136 136 SER SER B . n B 1 102 VAL 102 137 137 VAL VAL B . n B 1 103 ASP 103 138 138 ASP ASP B . n B 1 104 LEU 104 139 139 LEU LEU B . n B 1 105 LYS 105 140 140 LYS LYS B . n B 1 106 SER 106 141 141 SER SER B . n B 1 107 LEU 107 142 142 LEU LEU B . n B 1 108 THR 108 143 143 THR THR B . n B 1 109 SER 109 144 144 SER SER B . n B 1 110 LEU 110 145 145 LEU LEU B . n B 1 111 PHE 111 146 146 PHE PHE B . n B 1 112 ARG 112 147 147 ARG ARG B . n B 1 113 GLY 113 148 148 GLY GLY B . n B 1 114 ASP 114 149 149 ASP ASP B . n B 1 115 ARG 115 150 150 ARG ARG B . n B 1 116 CYS 116 151 151 CYS CYS B . n B 1 117 PRO 117 152 152 PRO PRO B . n B 1 118 SER 118 153 153 SER SER B . n B 1 119 LEU 119 154 154 LEU LEU B . n B 1 120 VAL 120 155 155 VAL VAL B . n B 1 121 GLY 121 156 156 GLY GLY B . n B 1 122 LYS 122 157 157 LYS LYS B . n B 1 123 PRO 123 158 158 PRO PRO B . n B 1 124 LYS 124 159 159 LYS LYS B . n B 1 125 LEU 125 160 160 LEU LEU B . n B 1 126 PHE 126 161 161 PHE PHE B . n B 1 127 PHE 127 162 162 PHE PHE B . n B 1 128 ILE 128 163 163 ILE ILE B . n B 1 129 GLN 129 164 164 GLN GLN B . n B 1 130 ALA 130 165 165 ALA ALA B . n B 1 131 CYS 131 166 166 CYS CYS B . n B 1 132 ARG 132 167 167 ARG ARG B . n B 1 133 GLY 133 168 168 GLY GLY B . n B 1 134 THR 134 169 169 THR THR B . n B 1 135 GLU 135 170 170 GLU GLU B . n B 1 136 LEU 136 171 171 LEU LEU B . n B 1 137 ASP 137 172 172 ASP ASP B . n B 1 138 PRO 138 173 173 PRO PRO B . n B 1 139 GLY 139 174 174 GLY GLY B . n B 1 140 VAL 140 175 175 VAL VAL B . n B 1 141 GLU 141 176 176 GLU GLU B . n B 1 142 THR 142 177 177 THR THR B . n B 1 143 ASP 143 178 ? ? ? B . n B 1 144 HIS 144 179 ? ? ? B . n B 1 145 THR 145 180 ? ? ? B . n B 1 146 ASP 146 181 ? ? ? B . n B 1 147 HIS 147 182 ? ? ? B . n B 1 148 PRO 148 183 ? ? ? B . n B 1 149 ASP 149 184 ? ? ? B . n B 1 150 ILE 150 185 ? ? ? B . n B 1 151 PRO 151 186 ? ? ? B . n B 1 152 ASP 152 187 ? ? ? B . n B 1 153 GLY 153 188 ? ? ? B . n B 1 154 ARG 154 189 189 ARG ARG B . n B 1 155 GLU 155 190 190 GLU GLU B . n B 1 156 ARG 156 191 191 ARG ARG B . n B 1 157 ILE 157 192 192 ILE ILE B . n B 1 158 PRO 158 193 193 PRO PRO B . n B 1 159 VAL 159 194 194 VAL VAL B . n B 1 160 GLU 160 195 195 GLU GLU B . n B 1 161 ALA 161 196 196 ALA ALA B . n B 1 162 ASP 162 197 197 ASP ASP B . n B 1 163 PHE 163 198 198 PHE PHE B . n B 1 164 LEU 164 199 199 LEU LEU B . n B 1 165 TYR 165 200 200 TYR TYR B . n B 1 166 ALA 166 201 201 ALA ALA B . n B 1 167 TYR 167 202 202 TYR TYR B . n B 1 168 SER 168 203 203 SER SER B . n B 1 169 THR 169 204 204 THR THR B . n B 1 170 VAL 170 205 205 VAL VAL B . n B 1 171 PRO 171 206 206 PRO PRO B . n B 1 172 GLY 172 207 207 GLY GLY B . n B 1 173 TYR 173 208 208 TYR TYR B . n B 1 174 TYR 174 209 209 TYR TYR B . n B 1 175 SER 175 210 210 SER SER B . n B 1 176 TRP 176 211 211 TRP TRP B . n B 1 177 ARG 177 212 212 ARG ARG B . n B 1 178 ASN 178 213 213 ASN ASN B . n B 1 179 THR 179 214 214 THR THR B . n B 1 180 MET 180 215 215 MET MET B . n B 1 181 THR 181 216 216 THR THR B . n B 1 182 GLY 182 217 217 GLY GLY B . n B 1 183 SER 183 218 218 SER SER B . n B 1 184 TRP 184 219 219 TRP TRP B . n B 1 185 PHE 185 220 220 PHE PHE B . n B 1 186 ILE 186 221 221 ILE ILE B . n B 1 187 GLN 187 222 222 GLN GLN B . n B 1 188 SER 188 223 223 SER SER B . n B 1 189 LEU 189 224 224 LEU LEU B . n B 1 190 CYS 190 225 225 CYS CYS B . n B 1 191 GLU 191 226 226 GLU GLU B . n B 1 192 MET 192 227 227 MET MET B . n B 1 193 MET 193 228 228 MET MET B . n B 1 194 THR 194 229 229 THR THR B . n B 1 195 LYS 195 230 230 LYS LYS B . n B 1 196 TYR 196 231 231 TYR TYR B . n B 1 197 GLY 197 232 232 GLY GLY B . n B 1 198 SER 198 233 233 SER SER B . n B 1 199 GLU 199 234 234 GLU GLU B . n B 1 200 LEU 200 235 235 LEU LEU B . n B 1 201 GLU 201 236 236 GLU GLU B . n B 1 202 LEU 202 237 237 LEU LEU B . n B 1 203 LEU 203 238 238 LEU LEU B . n B 1 204 GLN 204 239 239 GLN GLN B . n B 1 205 ILE 205 240 240 ILE ILE B . n B 1 206 MET 206 241 241 MET MET B . n B 1 207 THR 207 242 242 THR THR B . n B 1 208 ARG 208 243 243 ARG ARG B . n B 1 209 VAL 209 244 244 VAL VAL B . n B 1 210 ASN 210 245 245 ASN ASN B . n B 1 211 HIS 211 246 246 HIS HIS B . n B 1 212 LYS 212 247 247 LYS LYS B . n B 1 213 VAL 213 248 248 VAL VAL B . n B 1 214 ALA 214 249 249 ALA ALA B . n B 1 215 LEU 215 250 250 LEU LEU B . n B 1 216 ASP 216 251 251 ASP ASP B . n B 1 217 PHE 217 252 252 PHE PHE B . n B 1 218 GLU 218 253 253 GLU GLU B . n B 1 219 SER 219 254 254 SER SER B . n B 1 220 THR 220 255 255 THR THR B . n B 1 221 SER 221 256 256 SER SER B . n B 1 222 ASN 222 257 257 ASN ASN B . n B 1 223 MET 223 258 258 MET MET B . n B 1 224 PRO 224 259 259 PRO PRO B . n B 1 225 GLY 225 260 260 GLY GLY B . n B 1 226 PHE 226 261 261 PHE PHE B . n B 1 227 ASP 227 262 262 ASP ASP B . n B 1 228 ALA 228 263 263 ALA ALA B . n B 1 229 LYS 229 264 264 LYS LYS B . n B 1 230 LYS 230 265 265 LYS LYS B . n B 1 231 GLN 231 266 266 GLN GLN B . n B 1 232 ILE 232 267 267 ILE ILE B . n B 1 233 PRO 233 268 268 PRO PRO B . n B 1 234 CYS 234 269 269 CYS CYS B . n B 1 235 ILE 235 270 270 ILE ILE B . n B 1 236 VAL 236 271 271 VAL VAL B . n B 1 237 SER 237 272 272 SER SER B . n B 1 238 MET 238 273 273 MET MET B . n B 1 239 LEU 239 274 274 LEU LEU B . n B 1 240 THR 240 275 275 THR THR B . n B 1 241 LYS 241 276 276 LYS LYS B . n B 1 242 GLU 242 277 277 GLU GLU B . n B 1 243 MET 243 278 278 MET MET B . n B 1 244 TYR 244 279 279 TYR TYR B . n B 1 245 PHE 245 280 280 PHE PHE B . n B 1 246 THR 246 281 281 THR THR B . n B 1 247 PRO 247 282 282 PRO PRO B . n B 1 248 SER 248 283 ? ? ? B . n B 1 249 GLU 249 284 ? ? ? B . n C 2 1 ACE 1 1 1 ACE ACE F . n C 2 2 ASP 2 2 2 ASP ASP F . n C 2 3 GLU 3 3 3 GLU GLU F . n C 2 4 VAL 4 4 4 VAL VAL F . n C 2 5 ASP 5 5 5 ASP ASP F . n C 2 6 0QE 6 6 6 0QE 0QE F . n D 2 1 ACE 1 1 1 ACE ACE C . n D 2 2 ASP 2 2 2 ASP ASP C . n D 2 3 GLU 3 3 3 GLU GLU C . n D 2 4 VAL 4 4 4 VAL VAL C . n D 2 5 ASP 5 5 5 ASP ASP C . n D 2 6 0QE 6 6 6 0QE 0QE C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MPD 1 301 301 MPD MPD A . F 4 MRD 1 302 302 MRD MRD A . G 5 HOH 1 401 401 HOH HOH A . G 5 HOH 2 402 402 HOH HOH A . G 5 HOH 3 403 403 HOH HOH A . G 5 HOH 4 404 404 HOH HOH A . G 5 HOH 5 405 405 HOH HOH A . G 5 HOH 6 406 406 HOH HOH A . G 5 HOH 7 407 407 HOH HOH A . G 5 HOH 8 408 408 HOH HOH A . G 5 HOH 9 409 409 HOH HOH A . G 5 HOH 10 410 410 HOH HOH A . G 5 HOH 11 411 411 HOH HOH A . G 5 HOH 12 412 412 HOH HOH A . G 5 HOH 13 413 413 HOH HOH A . G 5 HOH 14 414 414 HOH HOH A . G 5 HOH 15 415 415 HOH HOH A . G 5 HOH 16 416 416 HOH HOH A . G 5 HOH 17 417 417 HOH HOH A . G 5 HOH 18 418 418 HOH HOH A . G 5 HOH 19 419 419 HOH HOH A . G 5 HOH 20 420 420 HOH HOH A . G 5 HOH 21 421 421 HOH HOH A . G 5 HOH 22 422 422 HOH HOH A . G 5 HOH 23 423 423 HOH HOH A . G 5 HOH 24 424 424 HOH HOH A . G 5 HOH 25 425 425 HOH HOH A . G 5 HOH 26 426 426 HOH HOH A . G 5 HOH 27 427 427 HOH HOH A . G 5 HOH 28 428 428 HOH HOH A . G 5 HOH 29 429 429 HOH HOH A . G 5 HOH 30 430 430 HOH HOH A . G 5 HOH 31 431 431 HOH HOH A . G 5 HOH 32 432 432 HOH HOH A . G 5 HOH 33 433 433 HOH HOH A . G 5 HOH 34 434 434 HOH HOH A . G 5 HOH 35 435 435 HOH HOH A . G 5 HOH 36 436 436 HOH HOH A . G 5 HOH 37 437 437 HOH HOH A . G 5 HOH 38 438 438 HOH HOH A . G 5 HOH 39 439 439 HOH HOH A . G 5 HOH 40 440 440 HOH HOH A . G 5 HOH 41 441 441 HOH HOH A . G 5 HOH 42 442 442 HOH HOH A . G 5 HOH 43 443 443 HOH HOH A . G 5 HOH 44 444 444 HOH HOH A . G 5 HOH 45 445 445 HOH HOH A . G 5 HOH 46 446 446 HOH HOH A . G 5 HOH 47 447 447 HOH HOH A . G 5 HOH 48 448 448 HOH HOH A . G 5 HOH 49 449 449 HOH HOH A . G 5 HOH 50 450 450 HOH HOH A . G 5 HOH 51 451 451 HOH HOH A . G 5 HOH 52 452 452 HOH HOH A . G 5 HOH 53 453 453 HOH HOH A . G 5 HOH 54 454 454 HOH HOH A . G 5 HOH 55 455 455 HOH HOH A . G 5 HOH 56 456 456 HOH HOH A . G 5 HOH 57 457 457 HOH HOH A . G 5 HOH 58 458 458 HOH HOH A . G 5 HOH 59 459 459 HOH HOH A . G 5 HOH 60 460 460 HOH HOH A . G 5 HOH 61 461 461 HOH HOH A . G 5 HOH 62 462 462 HOH HOH A . G 5 HOH 63 463 463 HOH HOH A . G 5 HOH 64 464 464 HOH HOH A . G 5 HOH 65 465 465 HOH HOH A . G 5 HOH 66 466 466 HOH HOH A . G 5 HOH 67 467 467 HOH HOH A . G 5 HOH 68 468 468 HOH HOH A . G 5 HOH 69 469 469 HOH HOH A . H 5 HOH 1 301 301 HOH HOH B . H 5 HOH 2 302 302 HOH HOH B . H 5 HOH 3 303 303 HOH HOH B . H 5 HOH 4 304 304 HOH HOH B . H 5 HOH 5 305 305 HOH HOH B . H 5 HOH 6 306 306 HOH HOH B . H 5 HOH 7 307 307 HOH HOH B . H 5 HOH 8 308 308 HOH HOH B . H 5 HOH 9 309 309 HOH HOH B . H 5 HOH 10 310 310 HOH HOH B . H 5 HOH 11 311 311 HOH HOH B . H 5 HOH 12 312 312 HOH HOH B . H 5 HOH 13 313 313 HOH HOH B . H 5 HOH 14 314 314 HOH HOH B . H 5 HOH 15 315 315 HOH HOH B . H 5 HOH 16 316 316 HOH HOH B . H 5 HOH 17 317 317 HOH HOH B . H 5 HOH 18 318 318 HOH HOH B . H 5 HOH 19 319 319 HOH HOH B . H 5 HOH 20 320 320 HOH HOH B . H 5 HOH 21 321 321 HOH HOH B . H 5 HOH 22 322 322 HOH HOH B . H 5 HOH 23 323 323 HOH HOH B . H 5 HOH 24 324 324 HOH HOH B . H 5 HOH 25 325 325 HOH HOH B . H 5 HOH 26 326 326 HOH HOH B . H 5 HOH 27 327 327 HOH HOH B . H 5 HOH 28 328 328 HOH HOH B . H 5 HOH 29 329 329 HOH HOH B . H 5 HOH 30 330 330 HOH HOH B . H 5 HOH 31 331 331 HOH HOH B . H 5 HOH 32 332 332 HOH HOH B . H 5 HOH 33 333 333 HOH HOH B . H 5 HOH 34 334 334 HOH HOH B . H 5 HOH 35 335 335 HOH HOH B . H 5 HOH 36 336 336 HOH HOH B . H 5 HOH 37 337 337 HOH HOH B . H 5 HOH 38 338 338 HOH HOH B . H 5 HOH 39 339 339 HOH HOH B . H 5 HOH 40 340 340 HOH HOH B . H 5 HOH 41 341 341 HOH HOH B . H 5 HOH 42 342 342 HOH HOH B . H 5 HOH 43 343 343 HOH HOH B . H 5 HOH 44 344 344 HOH HOH B . H 5 HOH 45 345 345 HOH HOH B . H 5 HOH 46 346 346 HOH HOH B . H 5 HOH 47 347 347 HOH HOH B . H 5 HOH 48 348 348 HOH HOH B . H 5 HOH 49 349 349 HOH HOH B . H 5 HOH 50 350 350 HOH HOH B . H 5 HOH 51 351 351 HOH HOH B . H 5 HOH 52 352 352 HOH HOH B . H 5 HOH 53 353 353 HOH HOH B . H 5 HOH 54 354 354 HOH HOH B . H 5 HOH 55 355 355 HOH HOH B . H 5 HOH 56 356 356 HOH HOH B . H 5 HOH 57 357 357 HOH HOH B . H 5 HOH 58 358 358 HOH HOH B . I 5 HOH 1 101 101 HOH HOH F . I 5 HOH 2 102 102 HOH HOH F . I 5 HOH 3 103 103 HOH HOH F . # _pdbx_molecule_features.prd_id PRD_000238 _pdbx_molecule_features.name Ac-Asp-Glu-Val-Asp-CMK _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000238 C 2 PRD_000238 D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7170 ? 1 MORE -26 ? 1 'SSA (A^2)' 17990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-10-26 2 'Structure model' 1 1 2016-11-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 454 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 468 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 98.07 _pdbx_validate_rmsd_angle.angle_target_value 110.40 _pdbx_validate_rmsd_angle.angle_deviation -12.33 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 37 ? ? 154.88 99.03 2 1 ARG A 67 ? ? -102.56 67.41 3 1 ASP A 93 ? ? 46.56 73.19 4 1 THR A 135 ? ? -169.13 -168.32 5 1 ARG A 147 ? ? -46.90 153.56 6 1 ALA A 165 ? ? -174.97 149.01 7 1 ASP A 197 ? ? 71.40 30.29 8 1 ARG B 61 ? ? -62.51 7.68 9 1 ARG B 67 ? ? -102.12 68.01 10 1 SER B 123 ? ? -174.30 -178.86 11 1 ARG B 147 ? ? -49.76 151.06 12 1 ALA B 165 ? ? -176.99 143.65 13 1 CYS B 166 ? ? -49.82 150.82 14 1 GLU B 190 ? ? 97.96 108.56 15 1 ASP B 197 ? ? 70.71 30.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 38 ? CG ? A PHE 3 CG 2 1 Y 1 A PHE 38 ? CD1 ? A PHE 3 CD1 3 1 Y 1 A PHE 38 ? CD2 ? A PHE 3 CD2 4 1 Y 1 A PHE 38 ? CE1 ? A PHE 3 CE1 5 1 Y 1 A PHE 38 ? CE2 ? A PHE 3 CE2 6 1 Y 1 A PHE 38 ? CZ ? A PHE 3 CZ 7 1 Y 1 A LYS 83 ? CD ? A LYS 48 CD 8 1 Y 1 A LYS 83 ? CE ? A LYS 48 CE 9 1 Y 1 A LYS 83 ? NZ ? A LYS 48 NZ 10 1 Y 1 A GLU 127 ? CG ? A GLU 92 CG 11 1 Y 1 A GLU 127 ? CD ? A GLU 92 CD 12 1 Y 1 A GLU 127 ? OE1 ? A GLU 92 OE1 13 1 Y 1 A GLU 127 ? OE2 ? A GLU 92 OE2 14 1 Y 1 A GLU 190 ? CG ? A GLU 155 CG 15 1 Y 1 A GLU 190 ? CD ? A GLU 155 CD 16 1 Y 1 A GLU 190 ? OE1 ? A GLU 155 OE1 17 1 Y 1 A GLU 190 ? OE2 ? A GLU 155 OE2 18 1 Y 1 A MET 215 ? CG ? A MET 180 CG 19 1 Y 1 A MET 215 ? SD ? A MET 180 SD 20 1 Y 1 A MET 215 ? CE ? A MET 180 CE 21 1 Y 1 A GLU 277 ? CG ? A GLU 242 CG 22 1 Y 1 A GLU 277 ? CD ? A GLU 242 CD 23 1 Y 1 A GLU 277 ? OE1 ? A GLU 242 OE1 24 1 Y 1 A GLU 277 ? OE2 ? A GLU 242 OE2 25 1 Y 1 B PHE 38 ? CG ? B PHE 3 CG 26 1 Y 1 B PHE 38 ? CD1 ? B PHE 3 CD1 27 1 Y 1 B PHE 38 ? CD2 ? B PHE 3 CD2 28 1 Y 1 B PHE 38 ? CE1 ? B PHE 3 CE1 29 1 Y 1 B PHE 38 ? CE2 ? B PHE 3 CE2 30 1 Y 1 B PHE 38 ? CZ ? B PHE 3 CZ 31 1 Y 1 B ARG 60 ? CG ? B ARG 25 CG 32 1 Y 1 B ARG 60 ? CD ? B ARG 25 CD 33 1 Y 1 B ARG 60 ? NE ? B ARG 25 NE 34 1 Y 1 B ARG 60 ? CZ ? B ARG 25 CZ 35 1 Y 1 B ARG 60 ? NH1 ? B ARG 25 NH1 36 1 Y 1 B ARG 60 ? NH2 ? B ARG 25 NH2 37 1 Y 1 B LYS 89 ? CG ? B LYS 54 CG 38 1 Y 1 B LYS 89 ? CD ? B LYS 54 CD 39 1 Y 1 B LYS 89 ? CE ? B LYS 54 CE 40 1 Y 1 B LYS 89 ? NZ ? B LYS 54 NZ 41 1 Y 1 B GLU 176 ? CG ? B GLU 141 CG 42 1 Y 1 B GLU 176 ? CD ? B GLU 141 CD 43 1 Y 1 B GLU 176 ? OE1 ? B GLU 141 OE1 44 1 Y 1 B GLU 176 ? OE2 ? B GLU 141 OE2 45 1 Y 1 B ARG 189 ? CG ? B ARG 154 CG 46 1 Y 1 B ARG 189 ? CD ? B ARG 154 CD 47 1 Y 1 B ARG 189 ? NE ? B ARG 154 NE 48 1 Y 1 B ARG 189 ? CZ ? B ARG 154 CZ 49 1 Y 1 B ARG 189 ? NH1 ? B ARG 154 NH1 50 1 Y 1 B ARG 189 ? NH2 ? B ARG 154 NH2 51 1 Y 1 B GLU 190 ? CD ? B GLU 155 CD 52 1 Y 1 B GLU 190 ? OE1 ? B GLU 155 OE1 53 1 Y 1 B GLU 190 ? OE2 ? B GLU 155 OE2 54 1 Y 1 B GLU 226 ? CD ? B GLU 191 CD 55 1 Y 1 B GLU 226 ? OE1 ? B GLU 191 OE1 56 1 Y 1 B GLU 226 ? OE2 ? B GLU 191 OE2 57 1 Y 1 B GLU 234 ? CD ? B GLU 199 CD 58 1 Y 1 B GLU 234 ? OE1 ? B GLU 199 OE1 59 1 Y 1 B GLU 234 ? OE2 ? B GLU 199 OE2 60 1 Y 1 B GLU 236 ? CG ? B GLU 201 CG 61 1 Y 1 B GLU 236 ? CD ? B GLU 201 CD 62 1 Y 1 B GLU 236 ? OE1 ? B GLU 201 OE1 63 1 Y 1 B GLU 236 ? OE2 ? B GLU 201 OE2 64 1 Y 1 B MET 258 ? CG ? B MET 223 CG 65 1 Y 1 B MET 258 ? SD ? B MET 223 SD 66 1 Y 1 B MET 258 ? CE ? B MET 223 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 179 ? A HIS 144 2 1 Y 1 A THR 180 ? A THR 145 3 1 Y 1 A ASP 181 ? A ASP 146 4 1 Y 1 A HIS 182 ? A HIS 147 5 1 Y 1 A PRO 183 ? A PRO 148 6 1 Y 1 A ASP 184 ? A ASP 149 7 1 Y 1 A ILE 185 ? A ILE 150 8 1 Y 1 A PRO 186 ? A PRO 151 9 1 Y 1 A ASP 187 ? A ASP 152 10 1 Y 1 A GLY 188 ? A GLY 153 11 1 Y 1 A ARG 189 ? A ARG 154 12 1 Y 1 B HIS 36 ? B HIS 1 13 1 Y 1 B ASP 178 ? B ASP 143 14 1 Y 1 B HIS 179 ? B HIS 144 15 1 Y 1 B THR 180 ? B THR 145 16 1 Y 1 B ASP 181 ? B ASP 146 17 1 Y 1 B HIS 182 ? B HIS 147 18 1 Y 1 B PRO 183 ? B PRO 148 19 1 Y 1 B ASP 184 ? B ASP 149 20 1 Y 1 B ILE 185 ? B ILE 150 21 1 Y 1 B PRO 186 ? B PRO 151 22 1 Y 1 B ASP 187 ? B ASP 152 23 1 Y 1 B GLY 188 ? B GLY 153 24 1 Y 1 B SER 283 ? B SER 248 25 1 Y 1 B GLU 284 ? B GLU 249 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 5 water HOH #