HEADER DE NOVO PROTEIN 19-APR-16 5JG9 TITLE CRYSTAL STRUCTURE OF THE DE NOVO MINI PROTEIN GEHEE_06 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGN, HYPER STABLE, DISULFIDE-RICH MINI PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS DE NOVO DESIGN OF HYPER STABLE, DISULFIDE-RICH, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.B.RUPERT,W.A.JOHNSEN REVDAT 4 02-NOV-16 5JG9 1 JRNL REVDAT 3 26-OCT-16 5JG9 1 JRNL REVDAT 2 12-OCT-16 5JG9 1 TITLE REVDAT 1 28-SEP-16 5JG9 0 JRNL AUTH G.BHARDWAJ,V.K.MULLIGAN,C.D.BAHL,J.M.GILMORE,P.J.HARVEY, JRNL AUTH 2 O.CHENEVAL,G.W.BUCHKO,S.V.PULAVARTI,Q.KAAS,A.ELETSKY, JRNL AUTH 3 P.S.HUANG,W.A.JOHNSEN,P.J.GREISEN,G.J.ROCKLIN,Y.SONG, JRNL AUTH 4 T.W.LINSKY,A.WATKINS,S.A.RETTIE,X.XU,L.P.CARTER,R.BONNEAU, JRNL AUTH 5 J.M.OLSON,E.COUTSIAS,C.E.CORRENTI,T.SZYPERSKI,D.J.CRAIK, JRNL AUTH 6 D.BAKER JRNL TITL ACCURATE DE NOVO DESIGN OF HYPERSTABLE CONSTRAINED PEPTIDES. JRNL REF NATURE V. 538 329 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27626386 JRNL DOI 10.1038/NATURE19791 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 8310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 499 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 2.12000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.042 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1249 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1162 ; 0.012 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1653 ; 2.199 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2657 ; 2.078 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;29.923 ;21.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;15.015 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.045 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 145 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1456 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 340 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 563 ; 1.599 ; 2.003 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 562 ; 1.595 ; 2.004 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 700 ; 2.302 ; 2.988 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 701 ; 2.301 ; 2.988 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 686 ; 2.122 ; 2.382 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 686 ; 2.122 ; 2.381 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 951 ; 3.345 ; 3.461 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1357 ; 5.740 ;15.736 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1358 ; 5.738 ;15.753 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 44 B 0 44 4820 0.18 0.05 REMARK 3 2 A 0 44 C 0 44 4934 0.18 0.05 REMARK 3 3 B -1 45 C -1 45 4820 0.18 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1680 -10.0749 -3.1830 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: 0.1081 REMARK 3 T33: 0.0681 T12: -0.0272 REMARK 3 T13: 0.0033 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 10.7312 L22: 3.0466 REMARK 3 L33: 3.5315 L12: -1.1532 REMARK 3 L13: -3.4117 L23: 0.1244 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: 0.0100 S13: 0.1013 REMARK 3 S21: -0.0952 S22: -0.0753 S23: -0.4115 REMARK 3 S31: -0.0648 S32: 0.0876 S33: 0.1577 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4749 -27.7360 -11.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.1097 REMARK 3 T33: 0.0544 T12: 0.0176 REMARK 3 T13: -0.0154 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.4553 L22: 1.3783 REMARK 3 L33: 11.4777 L12: 0.6462 REMARK 3 L13: -2.9775 L23: -2.1757 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: 0.1590 S13: -0.2748 REMARK 3 S21: -0.1828 S22: -0.0249 S23: -0.0397 REMARK 3 S31: 0.2533 S32: -0.3724 S33: -0.0932 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 45 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2446 -5.9396 -16.3155 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.1007 REMARK 3 T33: 0.0041 T12: 0.0202 REMARK 3 T13: -0.0027 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 8.9611 L22: 3.7624 REMARK 3 L33: 6.2766 L12: 1.7585 REMARK 3 L13: -5.2451 L23: -2.2373 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: -0.0399 S13: -0.0200 REMARK 3 S21: 0.0268 S22: 0.0498 S23: 0.0481 REMARK 3 S31: -0.2059 S32: 0.0439 S33: 0.0552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, BUFFER 7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.76650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 0 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 7 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 4 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 16 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 16 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG C 44 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 DBREF 5JG9 A -1 45 PDB 5JG9 5JG9 -1 45 DBREF 5JG9 B -1 45 PDB 5JG9 5JG9 -1 45 DBREF 5JG9 C -1 45 PDB 5JG9 5JG9 -1 45 SEQRES 1 A 47 GLY SER GLU GLU ARG ARG TYR LYS ARG CYS GLY GLN ASP SEQRES 2 A 47 GLU GLU ARG VAL ARG ARG GLU CYS LYS GLU ARG GLY GLU SEQRES 3 A 47 ARG GLN ASN CYS GLN TYR GLN ILE ARG LYS GLU GLY ASN SEQRES 4 A 47 CYS TYR VAL CYS GLU ILE ARG CYS SEQRES 1 B 47 GLY SER GLU GLU ARG ARG TYR LYS ARG CYS GLY GLN ASP SEQRES 2 B 47 GLU GLU ARG VAL ARG ARG GLU CYS LYS GLU ARG GLY GLU SEQRES 3 B 47 ARG GLN ASN CYS GLN TYR GLN ILE ARG LYS GLU GLY ASN SEQRES 4 B 47 CYS TYR VAL CYS GLU ILE ARG CYS SEQRES 1 C 47 GLY SER GLU GLU ARG ARG TYR LYS ARG CYS GLY GLN ASP SEQRES 2 C 47 GLU GLU ARG VAL ARG ARG GLU CYS LYS GLU ARG GLY GLU SEQRES 3 C 47 ARG GLN ASN CYS GLN TYR GLN ILE ARG LYS GLU GLY ASN SEQRES 4 C 47 CYS TYR VAL CYS GLU ILE ARG CYS HET CL B 101 1 HET GOL C 101 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CL CL 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *68(H2 O) HELIX 1 AA1 ASP A 11 GLN A 26 1 16 HELIX 2 AA2 ASP B 11 GLN B 26 1 16 HELIX 3 AA3 ASP C 11 ASN C 27 1 17 SHEET 1 AA1 9 GLN B 29 GLU B 35 0 SHEET 2 AA1 9 CYS B 38 CYS B 45 -1 O GLU B 42 N GLN B 31 SHEET 3 AA1 9 SER B 0 LYS B 6 -1 N ARG B 3 O ILE B 43 SHEET 4 AA1 9 GLU A 1 LYS A 6 -1 N GLU A 2 O ARG B 4 SHEET 5 AA1 9 CYS A 38 ARG A 44 -1 O ILE A 43 N ARG A 3 SHEET 6 AA1 9 GLN A 29 GLU A 35 -1 N GLN A 31 O GLU A 42 SHEET 7 AA1 9 GLU C 2 LYS C 6 1 O ARG C 4 N LYS A 34 SHEET 8 AA1 9 CYS C 38 ARG C 44 -1 O ILE C 43 N ARG C 3 SHEET 9 AA1 9 GLN C 29 GLU C 35 -1 N GLN C 31 O GLU C 42 SSBOND 1 CYS A 8 CYS A 38 1555 1555 2.01 SSBOND 2 CYS A 19 CYS A 41 1555 1555 2.08 SSBOND 3 CYS A 28 CYS A 45 1555 1555 1.99 SSBOND 4 CYS B 8 CYS B 38 1555 1555 2.02 SSBOND 5 CYS B 19 CYS B 41 1555 1555 2.07 SSBOND 6 CYS B 28 CYS B 45 1555 1555 1.98 SSBOND 7 CYS C 8 CYS C 38 1555 1555 2.04 SSBOND 8 CYS C 19 CYS C 41 1555 1555 2.06 SSBOND 9 CYS C 28 CYS C 45 1555 1555 1.99 SITE 1 AC1 3 ARG B 7 GLY B 9 GLN B 10 SITE 1 AC2 5 GLY A 36 TYR C 5 LYS C 6 ARG C 7 SITE 2 AC2 5 HOH C 206 CRYST1 34.920 45.533 49.704 90.00 105.09 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028637 0.000000 0.007723 0.00000 SCALE2 0.000000 0.021962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020838 0.00000