HEADER PROTEIN TRANSPORT 20-APR-16 5JGE TITLE CRYSTAL STRUCTURE OF ATG19 COILED-COIL COMPLEXED WITH APE1 PROPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 19; COMPND 3 CHAIN: A, B, D, E; COMPND 4 SYNONYM: CYTOPLASM-TO-VACUOLE TARGETING PROTEIN 19; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: APE1 PROPEPTIDE; COMPND 8 CHAIN: C, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: ATG19, CVT19, YOL082W, O0980, YOL01; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECEPTOR, COMPLEX, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.WATANABE,N.N.NODA REVDAT 4 20-MAR-24 5JGE 1 REMARK REVDAT 3 19-FEB-20 5JGE 1 REMARK REVDAT 2 13-JUL-16 5JGE 1 JRNL REVDAT 1 29-JUN-16 5JGE 0 JRNL AUTH A.YAMASAKI,Y.WATANABE,W.ADACHI,K.SUZUKI,K.MATOBA,H.KIRISAKO, JRNL AUTH 2 H.KUMETA,H.NAKATOGAWA,Y.OHSUMI,F.INAGAKI,N.N.NODA JRNL TITL STRUCTURAL BASIS FOR RECEPTOR-MEDIATED SELECTIVE AUTOPHAGY JRNL TITL 2 OF AMINOPEPTIDASE I AGGREGATES JRNL REF CELL REP V. 16 19 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 27320913 JRNL DOI 10.1016/J.CELREP.2016.05.066 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 12989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : -1.49000 REMARK 3 B23 (A**2) : 1.72000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.881 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1346 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1399 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1790 ; 1.633 ; 2.031 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3248 ; 1.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 155 ; 4.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;43.373 ;27.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;16.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 4.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1438 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 252 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 638 ; 1.020 ; 1.819 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 637 ; 1.015 ; 1.818 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 787 ; 1.627 ; 2.703 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 788 ; 1.627 ; 2.704 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 708 ; 1.317 ; 1.990 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 708 ; 1.316 ; 1.990 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1003 ; 2.166 ; 2.919 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1678 ; 6.889 ;15.799 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1586 ; 6.579 ;14.691 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 5 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 158 181 B 158 181 2078 0.28 0.05 REMARK 3 2 A 158 184 D 158 184 2700 0.19 0.05 REMARK 3 3 A 158 184 E 158 184 2324 0.29 0.05 REMARK 3 4 B 156 181 E 156 181 2580 0.18 0.05 REMARK 3 5 C -1 21 F -1 21 2344 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4950 -4.9490 36.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1759 REMARK 3 T33: 0.0477 T12: -0.0173 REMARK 3 T13: 0.0256 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 14.0987 L22: 11.8775 REMARK 3 L33: 7.6859 L12: -10.1275 REMARK 3 L13: 8.6359 L23: -7.9146 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.3991 S13: 0.1645 REMARK 3 S21: -0.3288 S22: 0.0080 S23: -0.0943 REMARK 3 S31: 0.0257 S32: -0.1472 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6690 -7.2590 46.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.0592 REMARK 3 T33: 0.1345 T12: -0.0304 REMARK 3 T13: 0.0137 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 17.6080 L22: 1.2672 REMARK 3 L33: 10.9057 L12: -0.5144 REMARK 3 L13: 12.1057 L23: -0.5658 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.5807 S13: -0.1962 REMARK 3 S21: -0.0313 S22: 0.0598 S23: -0.1714 REMARK 3 S31: -0.0482 S32: 0.1477 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 21 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9380 -0.2140 45.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0871 REMARK 3 T33: 0.0820 T12: -0.0090 REMARK 3 T13: 0.0296 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 11.9108 L22: 3.7002 REMARK 3 L33: 2.1950 L12: -4.6067 REMARK 3 L13: 3.9001 L23: -2.5321 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.2377 S13: 0.2467 REMARK 3 S21: -0.0207 S22: -0.0846 S23: 0.0319 REMARK 3 S31: -0.0057 S32: 0.2083 S33: 0.0510 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 156 D 185 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9750 7.3560 67.4910 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1584 REMARK 3 T33: 0.0393 T12: 0.0381 REMARK 3 T13: -0.0220 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 14.6528 L22: 6.9911 REMARK 3 L33: 5.4330 L12: 8.0723 REMARK 3 L13: -7.3616 L23: -4.8604 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: -0.3806 S13: -0.0094 REMARK 3 S21: 0.3481 S22: -0.0865 S23: 0.0417 REMARK 3 S31: -0.1853 S32: -0.1321 S33: -0.0615 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 156 E 185 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6820 9.0660 59.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0501 REMARK 3 T33: 0.0573 T12: 0.0149 REMARK 3 T13: -0.0014 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 9.7161 L22: 0.4417 REMARK 3 L33: 6.9902 L12: 1.1530 REMARK 3 L13: -7.0740 L23: -0.4099 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: -0.3009 S13: -0.1964 REMARK 3 S21: -0.0683 S22: -0.0792 S23: -0.0279 REMARK 3 S31: 0.0450 S32: 0.0113 S33: 0.2140 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F -1 F 21 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3020 2.7420 58.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0116 REMARK 3 T33: 0.0476 T12: -0.0073 REMARK 3 T13: -0.0271 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 10.5013 L22: 4.7947 REMARK 3 L33: 1.6402 L12: 5.6535 REMARK 3 L13: -2.2758 L23: -1.9229 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0937 S13: -0.1059 REMARK 3 S21: 0.0002 S22: 0.0095 S23: 0.1549 REMARK 3 S31: -0.0154 S32: -0.0134 S33: -0.0197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 55.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 4000, 200 MM SODIUM REMARK 280 ACETATE, 100 MM TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 156 REMARK 465 PRO A 157 REMARK 465 LYS A 186 REMARK 465 GLU A 187 REMARK 465 VAL B 183 REMARK 465 THR B 184 REMARK 465 ASN B 185 REMARK 465 LYS B 186 REMARK 465 GLU B 187 REMARK 465 LYS D 186 REMARK 465 GLU D 187 REMARK 465 LYS E 186 REMARK 465 GLU E 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 180 NE2 GLN B 181 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 210 O HOH F 128 1455 2.11 REMARK 500 O HOH B 201 O HOH C 101 1455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JGF RELATED DB: PDB DBREF 5JGE A 160 187 UNP P35193 ATG19_YEAST 160 187 DBREF 5JGE B 160 187 UNP P35193 ATG19_YEAST 160 187 DBREF 5JGE C -1 21 PDB 5JGE 5JGE -1 21 DBREF 5JGE D 160 187 UNP P35193 ATG19_YEAST 160 187 DBREF 5JGE E 160 187 UNP P35193 ATG19_YEAST 160 187 DBREF 5JGE F -1 21 PDB 5JGE 5JGE -1 21 SEQADV 5JGE GLY A 156 UNP P35193 EXPRESSION TAG SEQADV 5JGE PRO A 157 UNP P35193 EXPRESSION TAG SEQADV 5JGE HIS A 158 UNP P35193 EXPRESSION TAG SEQADV 5JGE MET A 159 UNP P35193 EXPRESSION TAG SEQADV 5JGE GLY B 156 UNP P35193 EXPRESSION TAG SEQADV 5JGE PRO B 157 UNP P35193 EXPRESSION TAG SEQADV 5JGE HIS B 158 UNP P35193 EXPRESSION TAG SEQADV 5JGE MET B 159 UNP P35193 EXPRESSION TAG SEQADV 5JGE GLY D 156 UNP P35193 EXPRESSION TAG SEQADV 5JGE PRO D 157 UNP P35193 EXPRESSION TAG SEQADV 5JGE HIS D 158 UNP P35193 EXPRESSION TAG SEQADV 5JGE MET D 159 UNP P35193 EXPRESSION TAG SEQADV 5JGE GLY E 156 UNP P35193 EXPRESSION TAG SEQADV 5JGE PRO E 157 UNP P35193 EXPRESSION TAG SEQADV 5JGE HIS E 158 UNP P35193 EXPRESSION TAG SEQADV 5JGE MET E 159 UNP P35193 EXPRESSION TAG SEQRES 1 A 32 GLY PRO HIS MET LEU ASP ASN PHE MET LYS GLN LEU LEU SEQRES 2 A 32 LYS LEU GLU GLU SER LEU ASN LYS LEU GLU LEU GLU GLN SEQRES 3 A 32 LYS VAL THR ASN LYS GLU SEQRES 1 B 32 GLY PRO HIS MET LEU ASP ASN PHE MET LYS GLN LEU LEU SEQRES 2 B 32 LYS LEU GLU GLU SER LEU ASN LYS LEU GLU LEU GLU GLN SEQRES 3 B 32 LYS VAL THR ASN LYS GLU SEQRES 1 C 23 GLY PRO MET GLU GLU GLN ARG GLU ILE LEU GLU GLN LEU SEQRES 2 C 23 LYS LYS THR LEU GLN MET LEU THR VAL TYR SEQRES 1 D 32 GLY PRO HIS MET LEU ASP ASN PHE MET LYS GLN LEU LEU SEQRES 2 D 32 LYS LEU GLU GLU SER LEU ASN LYS LEU GLU LEU GLU GLN SEQRES 3 D 32 LYS VAL THR ASN LYS GLU SEQRES 1 E 32 GLY PRO HIS MET LEU ASP ASN PHE MET LYS GLN LEU LEU SEQRES 2 E 32 LYS LEU GLU GLU SER LEU ASN LYS LEU GLU LEU GLU GLN SEQRES 3 E 32 LYS VAL THR ASN LYS GLU SEQRES 1 F 23 GLY PRO MET GLU GLU GLN ARG GLU ILE LEU GLU GLN LEU SEQRES 2 F 23 LYS LYS THR LEU GLN MET LEU THR VAL TYR FORMUL 7 HOH *176(H2 O) HELIX 1 AA1 LEU A 160 ASN A 185 1 26 HELIX 2 AA2 PRO B 157 LYS B 182 1 26 HELIX 3 AA3 PRO C 0 LEU C 18 1 19 HELIX 4 AA4 MET D 159 ASN D 185 1 27 HELIX 5 AA5 PRO E 157 ASN E 185 1 29 HELIX 6 AA6 PRO F 0 LEU F 18 1 19 CRYST1 27.875 32.921 56.957 87.19 76.52 67.10 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035874 -0.015152 -0.009315 0.00000 SCALE2 0.000000 0.032974 0.001536 0.00000 SCALE3 0.000000 0.000000 0.018074 0.00000