HEADER HYDROLASE/HYDROLASE INHIBITOR 21-APR-16 5JHU TITLE POTENT, REVERSIBLE METAP2 INHIBITORS VIA FBDD COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 87-455; COMPND 5 SYNONYM: METAP 2,INITIATION FACTOR 2-ASSOCIATED 67 KDA GLYCOPROTEIN, COMPND 6 P67EIF2,PEPTIDASE M; COMPND 7 EC: 3.4.11.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP2, MNPEP, P67EIF2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS HYDROLASE, PEPTIDASE, METAL ION BINDING, PROTEOLYSIS, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DOUGAN REVDAT 3 22-NOV-17 5JHU 1 JRNL REMARK REVDAT 2 15-JUN-16 5JHU 1 JRNL REVDAT 1 25-MAY-16 5JHU 0 JRNL AUTH Z.CHERUVALLATH,M.TANG,C.MCBRIDE,M.KOMANDLA,J.MIURA,T.TON-NU, JRNL AUTH 2 P.ERIKSON,J.FENG,P.FARRELL,J.D.LAWSON,D.VANDERPOOL,Y.WU, JRNL AUTH 3 D.R.DOUGAN,A.PLONOWSKI,C.HOLUB,C.LARSON JRNL TITL DISCOVERY OF POTENT, REVERSIBLE METAP2 INHIBITORS VIA JRNL TITL 2 FRAGMENT BASED DRUG DISCOVERY AND STRUCTURE BASED DRUG JRNL TITL 3 DESIGN-PART 1. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 2774 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27155900 JRNL DOI 10.1016/J.BMCL.2016.04.073 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 40033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.28000 REMARK 3 B22 (A**2) : -2.09000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2998 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4069 ; 1.234 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;31.713 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;11.692 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2313 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2998 ; 1.647 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 111 ;23.995 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3132 ;11.098 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0909 -33.3113 -2.7673 REMARK 3 T TENSOR REMARK 3 T11: 0.4354 T22: 0.1668 REMARK 3 T33: 0.0317 T12: 0.1345 REMARK 3 T13: -0.0284 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.1293 L22: 1.3164 REMARK 3 L33: 0.9550 L12: 1.4182 REMARK 3 L13: -0.2610 L23: -0.1287 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.0284 S13: -0.1910 REMARK 3 S21: -0.4668 S22: -0.0715 S23: -0.0204 REMARK 3 S31: 0.3027 S32: 0.3400 S33: 0.0512 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8137 -36.9444 3.4004 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.0979 REMARK 3 T33: 0.0875 T12: 0.0028 REMARK 3 T13: -0.0748 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.0968 L22: 0.7532 REMARK 3 L33: 0.2055 L12: 0.7088 REMARK 3 L13: 0.4409 L23: 0.2647 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.0260 S13: -0.0268 REMARK 3 S21: -0.1803 S22: -0.0084 S23: 0.0320 REMARK 3 S31: 0.0538 S32: 0.0327 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4267 -20.5311 14.6969 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.1225 REMARK 3 T33: 0.1111 T12: -0.0049 REMARK 3 T13: 0.0095 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.1338 L22: 0.6488 REMARK 3 L33: 0.5630 L12: 0.0195 REMARK 3 L13: 0.2362 L23: -0.2301 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0032 S13: 0.0195 REMARK 3 S21: -0.0247 S22: -0.0280 S23: -0.0140 REMARK 3 S31: 0.0221 S32: 0.0312 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6091 -34.8106 20.7677 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.1190 REMARK 3 T33: 0.1246 T12: -0.0325 REMARK 3 T13: -0.0050 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.0623 L22: 0.5041 REMARK 3 L33: 0.6058 L12: 0.0565 REMARK 3 L13: 0.1860 L23: 0.0334 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0108 S13: 0.0035 REMARK 3 S21: 0.0119 S22: -0.0031 S23: 0.0869 REMARK 3 S31: 0.1043 S32: -0.0392 S33: -0.0360 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4110 -29.1239 21.1808 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.1356 REMARK 3 T33: 0.1377 T12: -0.0284 REMARK 3 T13: 0.0154 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.0468 L22: 0.5647 REMARK 3 L33: 0.6459 L12: 0.0369 REMARK 3 L13: 0.1403 L23: -0.1780 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.0024 S13: 0.0225 REMARK 3 S21: 0.1219 S22: -0.0131 S23: 0.2332 REMARK 3 S31: -0.0227 S32: -0.0353 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 369 A 396 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3472 -9.7730 17.6466 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1129 REMARK 3 T33: 0.1651 T12: 0.0200 REMARK 3 T13: 0.0313 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0030 L22: 1.3173 REMARK 3 L33: 0.9739 L12: -0.0074 REMARK 3 L13: 0.0101 L23: -0.9758 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0181 S13: -0.0012 REMARK 3 S21: 0.1535 S22: 0.0625 S23: 0.2692 REMARK 3 S31: -0.1228 S32: -0.0687 S33: -0.0582 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 397 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6214 -4.2591 10.4931 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0995 REMARK 3 T33: 0.1192 T12: 0.0140 REMARK 3 T13: 0.0154 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0597 L22: 1.1842 REMARK 3 L33: 0.4980 L12: -0.1799 REMARK 3 L13: -0.0501 L23: -0.3494 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0089 S13: -0.0146 REMARK 3 S21: -0.0082 S22: 0.0236 S23: 0.0103 REMARK 3 S31: -0.0577 S32: -0.0208 S33: -0.0242 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 445 A 478 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8237 -31.2435 16.3501 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.1188 REMARK 3 T33: 0.1269 T12: -0.0132 REMARK 3 T13: -0.0178 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.1061 L22: 0.4155 REMARK 3 L33: 0.5440 L12: 0.1891 REMARK 3 L13: 0.0730 L23: -0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.0037 S13: 0.0230 REMARK 3 S21: 0.0545 S22: 0.0394 S23: 0.1069 REMARK 3 S31: 0.0844 S32: -0.0262 S33: -0.0892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5JHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XFIT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.05M MES PH 5.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.06300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.06300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.09050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.48200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.09050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.48200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.06300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.09050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.48200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.06300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.09050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.48200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 913 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 346 REMARK 465 VAL A 347 REMARK 465 LYS A 348 REMARK 465 GLY A 349 REMARK 465 GLY A 350 REMARK 465 GLU A 351 REMARK 465 ALA A 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -16.30 -143.17 REMARK 500 CYS A 223 40.73 -144.78 REMARK 500 ASN A 226 -113.03 64.66 REMARK 500 ASP A 294 -3.65 76.15 REMARK 500 TYR A 336 18.28 57.78 REMARK 500 MET A 378 -178.98 75.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 912 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 7.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 57.9 REMARK 620 3 ASP A 262 OD1 96.5 154.4 REMARK 620 4 GLU A 459 OE2 101.1 98.3 87.7 REMARK 620 5 HOH A 621 O 145.6 88.0 117.4 86.3 REMARK 620 6 6KO A 505 N21 99.5 91.6 91.2 159.4 75.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 91.4 REMARK 620 3 GLU A 364 OE1 158.4 87.2 REMARK 620 4 GLU A 459 OE1 80.9 121.0 81.4 REMARK 620 5 HOH A 621 O 108.1 153.3 81.0 81.0 REMARK 620 6 6KO A 505 N23 83.5 88.4 118.0 146.8 76.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6KO A 505 DBREF 5JHU A 110 478 UNP P50579 MAP2_HUMAN 87 455 SEQRES 1 A 369 LYS VAL GLN THR ASP PRO PRO SER VAL PRO ILE CYS ASP SEQRES 2 A 369 LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY GLN GLU CYS SEQRES 3 A 369 GLU TYR PRO PRO THR GLN ASP GLY ARG THR ALA ALA TRP SEQRES 4 A 369 ARG THR THR SER GLU GLU LYS LYS ALA LEU ASP GLN ALA SEQRES 5 A 369 SER GLU GLU ILE TRP ASN ASP PHE ARG GLU ALA ALA GLU SEQRES 6 A 369 ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SER TRP ILE SEQRES 7 A 369 LYS PRO GLY MET THR MET ILE GLU ILE CYS GLU LYS LEU SEQRES 8 A 369 GLU ASP CYS SER ARG LYS LEU ILE LYS GLU ASN GLY LEU SEQRES 9 A 369 ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SER LEU ASN SEQRES 10 A 369 ASN CYS ALA ALA HIS TYR THR PRO ASN ALA GLY ASP THR SEQRES 11 A 369 THR VAL LEU GLN TYR ASP ASP ILE CYS LYS ILE ASP PHE SEQRES 12 A 369 GLY THR HIS ILE SER GLY ARG ILE ILE ASP CYS ALA PHE SEQRES 13 A 369 THR VAL THR PHE ASN PRO LYS TYR ASP THR LEU LEU LYS SEQRES 14 A 369 ALA VAL LYS ASP ALA THR ASN THR GLY ILE LYS CYS ALA SEQRES 15 A 369 GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY GLU ALA ILE SEQRES 16 A 369 GLN GLU VAL MET GLU SER TYR GLU VAL GLU ILE ASP GLY SEQRES 17 A 369 LYS THR TYR GLN VAL LYS PRO ILE ARG ASN LEU ASN GLY SEQRES 18 A 369 HIS SER ILE GLY GLN TYR ARG ILE HIS ALA GLY LYS THR SEQRES 19 A 369 VAL PRO ILE VAL LYS GLY GLY GLU ALA THR ARG MET GLU SEQRES 20 A 369 GLU GLY GLU VAL TYR ALA ILE GLU THR PHE GLY SER THR SEQRES 21 A 369 GLY LYS GLY VAL VAL HIS ASP ASP MET GLU CYS SER HIS SEQRES 22 A 369 TYR MET LYS ASN PHE ASP VAL GLY HIS VAL PRO ILE ARG SEQRES 23 A 369 LEU PRO ARG THR LYS HIS LEU LEU ASN VAL ILE ASN GLU SEQRES 24 A 369 ASN PHE GLY THR LEU ALA PHE CYS ARG ARG TRP LEU ASP SEQRES 25 A 369 ARG LEU GLY GLU SER LYS TYR LEU MET ALA LEU LYS ASN SEQRES 26 A 369 LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR PRO PRO LEU SEQRES 27 A 369 CYS ASP ILE LYS GLY SER TYR THR ALA GLN PHE GLU HIS SEQRES 28 A 369 THR ILE LEU LEU ARG PRO THR CYS LYS GLU VAL VAL SER SEQRES 29 A 369 ARG GLY ASP ASP TYR HET MN A 501 1 HET MN A 502 1 HET GOL A 503 6 HET DMS A 504 8 HET 6KO A 505 26 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM 6KO [(2R)-1-([1,2,4]TRIAZOLO[1,5-A]PYRIMIDIN-7-YL) HETNAM 2 6KO PYRROLIDIN-2-YL]METHYL 2-METHOXYBENZOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MN 2(MN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 DMS C2 H6 O S FORMUL 6 6KO C18 H19 N5 O3 FORMUL 7 HOH *313(H2 O) HELIX 1 AA1 PRO A 119 TYR A 124 1 6 HELIX 2 AA2 ALA A 147 SER A 152 1 6 HELIX 3 AA3 SER A 152 SER A 162 1 11 HELIX 4 AA4 SER A 162 ILE A 187 1 26 HELIX 5 AA5 THR A 192 LYS A 209 1 18 HELIX 6 AA6 ASN A 211 LEU A 213 5 3 HELIX 7 AA7 ASN A 270 LYS A 272 5 3 HELIX 8 AA8 TYR A 273 ALA A 291 1 19 HELIX 9 AA9 ARG A 296 GLU A 309 1 14 HELIX 10 AB1 LEU A 396 PHE A 410 1 15 HELIX 11 AB2 ARG A 417 LEU A 423 1 7 HELIX 12 AB3 TYR A 428 LEU A 438 1 11 SHEET 1 AA1 5 GLN A 133 CYS A 135 0 SHEET 2 AA1 5 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA1 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA1 5 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 AA1 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 AA2 6 GLN A 133 CYS A 135 0 SHEET 2 AA2 6 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA2 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA2 6 VAL A 360 SER A 368 -1 N TYR A 361 O ILE A 462 SHEET 5 AA2 6 GLY A 330 ILE A 333 -1 N HIS A 331 O ALA A 362 SHEET 6 AA2 6 THR A 343 VAL A 344 -1 O VAL A 344 N GLY A 330 SHEET 1 AA3 3 ALA A 215 LEU A 225 0 SHEET 2 AA3 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 AA3 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 AA4 3 CYS A 228 ALA A 230 0 SHEET 2 AA4 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 229 SHEET 3 AA4 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 AA5 2 GLU A 312 ILE A 315 0 SHEET 2 AA5 2 LYS A 318 GLN A 321 -1 O TYR A 320 N VAL A 313 SHEET 1 AA6 3 PHE A 415 CYS A 416 0 SHEET 2 AA6 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 AA6 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.09 LINK OD1 ASP A 251 MN MN A 502 1555 1555 2.28 LINK OD2 ASP A 251 MN MN A 502 1555 1555 2.19 LINK OD1 ASP A 262 MN MN A 502 1555 1555 2.09 LINK OD2 ASP A 262 MN MN A 501 1555 1555 2.14 LINK NE2 HIS A 331 MN MN A 501 1555 1555 2.22 LINK OE1 GLU A 364 MN MN A 501 1555 1555 2.31 LINK OE1 GLU A 459 MN MN A 501 1555 1555 2.18 LINK OE2 GLU A 459 MN MN A 502 1555 1555 2.12 LINK MN MN A 501 O HOH A 621 1555 1555 2.27 LINK MN MN A 501 N23 6KO A 505 1555 1555 2.18 LINK MN MN A 502 O HOH A 621 1555 1555 2.08 LINK MN MN A 502 N21 6KO A 505 1555 1555 2.39 CISPEP 1 ASP A 114 PRO A 115 0 -0.13 SITE 1 AC1 7 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC1 7 MN A 502 6KO A 505 HOH A 621 SITE 1 AC2 6 ASP A 251 ASP A 262 GLU A 459 MN A 501 SITE 2 AC2 6 6KO A 505 HOH A 621 SITE 1 AC3 2 PHE A 269 HOH A 655 SITE 1 AC4 5 TYR A 383 LEU A 429 LYS A 433 HOH A 702 SITE 2 AC4 5 HOH A 840 SITE 1 AC5 13 PHE A 219 HIS A 231 ASP A 251 ASP A 262 SITE 2 AC5 13 HIS A 331 ILE A 338 HIS A 339 HIS A 382 SITE 3 AC5 13 TYR A 444 MN A 501 MN A 502 HOH A 621 SITE 4 AC5 13 HOH A 797 CRYST1 90.181 100.964 100.126 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009987 0.00000