HEADER TRANSFERASE 21-APR-16 5JI0 TITLE PPARGAMMA-RXRALPHA(S427F) HETERODIMER IN COMPLEX WITH SRC-1, TITLE 2 ROSIGLITAZONE, AND 9-CIS-RETANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 5 RECEPTOR ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 10 CHAIN: D; COMPND 11 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 15 CHAIN: E, F; COMPND 16 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 17 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 18 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 19 EC: 2.3.1.48; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: AC-CPSSHSSLTERHKILHRLLQEGSPS-AMIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: PPARG, NR1C3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS PPARG, RXRA, SRC1, AGONIST, NUCLEAR HORMONE RECEPTOR, HETERODIMER, KEYWDS 2 BLADDER CANCER, MUSCLE INVASIVE BLADDER CANCER, MIBC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.BLOUDOFF,N.A.LARSEN REVDAT 1 26-APR-17 5JI0 0 JRNL AUTH M.KORPAL,P.ZHU,K.BLOUDOFF,N.A.LARSEN,P.FEKKES JRNL TITL PPARGAMMA-RXRALPHA(S427F) HETERODIMER IN COMPLEX WITH SRC-1, JRNL TITL 2 ROSIGLITAZONE, AND 9-CIS-RETANOIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 40336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -2.94000 REMARK 3 B33 (A**2) : 2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4214 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4186 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5687 ; 1.921 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9641 ; 1.168 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 6.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;36.205 ;24.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 785 ;15.969 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;25.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4624 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 4.182 ; 4.456 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2046 ; 4.182 ; 4.454 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2547 ; 5.827 ; 6.644 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2548 ; 5.826 ; 6.647 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2167 ; 4.688 ; 4.920 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2168 ; 4.688 ; 4.922 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3140 ; 7.071 ; 7.219 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5123 ; 9.859 ;37.127 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5054 ; 9.888 ;37.086 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 45.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GREW IN THE DARK AT ROOM REMARK 280 TEMPERATURE FROM 0.5 + 0.5 UL SITTING DROPS EQUILIBRATED OVER A REMARK 280 RESERVOIR CONTAINING 20-24% PEG3350 AND 0.02M NA CITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.94000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.96350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.26350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.96350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.94000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.26350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 MET A 222 REMARK 465 THR A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 PRO A 446 REMARK 465 ILE A 447 REMARK 465 ASP A 448 REMARK 465 GLU A 456 REMARK 465 ALA A 457 REMARK 465 PRO A 458 REMARK 465 HIS A 459 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 LYS D 263 REMARK 465 PHE D 264 REMARK 465 LYS D 265 REMARK 465 HIS D 266 REMARK 465 ACE E 675 REMARK 465 CYS E 676 REMARK 465 PRO E 677 REMARK 465 SER E 678 REMARK 465 SER E 679 REMARK 465 HIS E 680 REMARK 465 SER E 681 REMARK 465 NH2 E 701 REMARK 465 ACE F 675 REMARK 465 CYS F 676 REMARK 465 PRO F 677 REMARK 465 SER F 678 REMARK 465 SER F 679 REMARK 465 HIS F 680 REMARK 465 SER F 681 REMARK 465 SER F 682 REMARK 465 LEU F 683 REMARK 465 THR F 684 REMARK 465 GLU F 685 REMARK 465 ARG F 686 REMARK 465 HIS F 687 REMARK 465 GLY F 697 REMARK 465 SER F 698 REMARK 465 PRO F 699 REMARK 465 SER F 700 REMARK 465 NH2 F 701 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 244 CG CD CE NZ REMARK 470 ARG E 692 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 688 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS E 691 OE1 GLN E 695 2.07 REMARK 500 O HOH D 704 O HOH D 732 2.11 REMARK 500 O HOH D 751 O HOH D 756 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR D 238 OE1 GLN D 273 4447 1.52 REMARK 500 CA GLY D 239 OE1 GLN D 273 4447 1.57 REMARK 500 O GLY D 239 CG GLN D 273 4447 1.73 REMARK 500 N GLY D 239 OE1 GLN D 273 4447 1.75 REMARK 500 C THR D 238 OE1 GLN D 273 4447 1.78 REMARK 500 N LYS D 240 NE2 GLN D 273 4447 1.78 REMARK 500 C GLY D 239 NE2 GLN D 273 4447 1.84 REMARK 500 CA GLY D 239 CD GLN D 273 4447 1.87 REMARK 500 C GLY D 239 CG GLN D 273 4447 2.06 REMARK 500 O GLY D 239 CD GLN D 273 4447 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 212 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 234 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG D 234 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 228 52.83 37.69 REMARK 500 MET A 230 77.53 -169.99 REMARK 500 ALA A 241 4.80 -61.32 REMARK 500 GLU A 243 83.35 113.96 REMARK 500 THR A 248 -84.46 -82.12 REMARK 500 HIS A 288 -4.95 71.60 REMARK 500 GLU A 291 1.51 -62.38 REMARK 500 LYS D 261 10.34 -62.87 REMARK 500 SER D 274 -9.21 78.95 REMARK 500 THR D 459 17.90 -152.26 REMARK 500 THR D 461 -117.44 59.04 REMARK 500 ASP D 475 30.54 72.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 228 ASP A 229 146.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9CR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BRL D 501 DBREF 5JI0 A 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 5JI0 D 206 477 UNP P37231 PPARG_HUMAN 234 505 DBREF 5JI0 E 676 700 UNP Q15788 NCOA1_HUMAN 676 700 DBREF 5JI0 F 676 700 UNP Q15788 NCOA1_HUMAN 676 700 SEQADV 5JI0 GLY A 221 UNP P19793 EXPRESSION TAG SEQADV 5JI0 MET A 222 UNP P19793 EXPRESSION TAG SEQADV 5JI0 PHE A 427 UNP P19793 SER 427 ENGINEERED MUTATION SEQADV 5JI0 GLY D 205 UNP P37231 EXPRESSION TAG SEQADV 5JI0 ACE E 675 UNP Q15788 ACETYLATION SEQADV 5JI0 NH2 E 701 UNP Q15788 AMIDATION SEQADV 5JI0 ACE F 675 UNP Q15788 ACETYLATION SEQADV 5JI0 NH2 F 701 UNP Q15788 AMIDATION SEQRES 1 A 242 GLY MET THR SER SER ALA ASN GLU ASP MET PRO VAL GLU SEQRES 2 A 242 ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS THR SEQRES 3 A 242 GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SER SEQRES 4 A 242 SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN ALA ALA SEQRES 5 A 242 ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA LYS ARG SEQRES 6 A 242 ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP GLN VAL SEQRES 7 A 242 ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA SEQRES 8 A 242 SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP GLY ILE SEQRES 9 A 242 LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SER ALA SEQRES 10 A 242 HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL LEU SEQRES 11 A 242 THR GLU LEU VAL SER LYS MET ARG ASP MET GLN MET ASP SEQRES 12 A 242 LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE SEQRES 13 A 242 ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA GLU VAL SEQRES 14 A 242 GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU GLU ALA SEQRES 15 A 242 TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG PHE SEQRES 16 A 242 ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG PHE ILE SEQRES 17 A 242 GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU SEQRES 18 A 242 ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET GLU MET SEQRES 19 A 242 LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 D 273 GLY PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 D 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 D 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 D 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 D 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 D 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 D 273 GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 D 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 D 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 D 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 D 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 D 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 D 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 D 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 D 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 D 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 D 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 D 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 D 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 D 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 D 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 E 27 ACE CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS SEQRES 2 E 27 LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER SEQRES 3 E 27 NH2 SEQRES 1 F 27 ACE CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS SEQRES 2 F 27 LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER SEQRES 3 F 27 NH2 HET 9CR A 501 22 HET BRL D 501 25 HETNAM 9CR (9CIS)-RETINOIC ACID HETNAM BRL 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2- HETNAM 2 BRL PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) HETSYN BRL BRL49653; ROSIGLITAZONE FORMUL 5 9CR C20 H28 O2 FORMUL 6 BRL C18 H19 N3 O3 S FORMUL 7 HOH *231(H2 O) HELIX 1 AA1 PRO A 231 ALA A 241 1 11 HELIX 2 AA2 ASP A 263 ARG A 285 1 23 HELIX 3 AA3 PRO A 293 SER A 317 1 25 HELIX 4 AA4 ARG A 334 ALA A 340 1 7 HELIX 5 AA5 VAL A 342 LEU A 353 1 12 HELIX 6 AA6 LEU A 353 GLN A 361 1 9 HELIX 7 AA7 ASP A 363 PHE A 376 1 14 HELIX 8 AA8 ASN A 385 TYR A 408 1 24 HELIX 9 AA9 GLY A 413 LEU A 420 1 8 HELIX 10 AB1 ARG A 421 GLY A 443 1 23 HELIX 11 AB2 PHE A 450 LEU A 455 1 6 HELIX 12 AB3 GLU D 207 PHE D 226 1 20 HELIX 13 AB4 THR D 229 THR D 238 1 10 HELIX 14 AB5 ASP D 251 GLU D 259 1 9 HELIX 15 AB6 GLU D 276 SER D 302 1 27 HELIX 16 AB7 GLY D 305 LEU D 309 5 5 HELIX 17 AB8 ASP D 310 LEU D 333 1 24 HELIX 18 AB9 SER D 342 GLY D 344 5 3 HELIX 19 AC1 ARG D 350 SER D 355 1 6 HELIX 20 AC2 MET D 364 ALA D 376 1 13 HELIX 21 AC3 ASP D 380 LEU D 393 1 14 HELIX 22 AC4 ASN D 402 HIS D 425 1 24 HELIX 23 AC5 GLN D 430 GLU D 460 1 31 HELIX 24 AC6 HIS D 466 LYS D 474 1 9 HELIX 25 AC7 THR E 684 ARG E 686 5 3 HELIX 26 AC8 HIS E 687 GLY E 697 1 11 HELIX 27 AC9 ILE F 689 GLU F 696 1 8 SHEET 1 AA1 2 GLY A 323 LEU A 325 0 SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 AA2 4 PHE D 247 ILE D 249 0 SHEET 2 AA2 4 GLY D 346 THR D 349 1 O PHE D 347 N ILE D 249 SHEET 3 AA2 4 GLY D 338 ILE D 341 -1 N ILE D 341 O GLY D 346 SHEET 4 AA2 4 MET D 334 ASN D 335 -1 N ASN D 335 O GLY D 338 LINK C GLY D 239 CD GLN D 273 1555 4447 1.62 CISPEP 1 LYS D 358 PRO D 359 0 -5.38 SITE 1 AC1 9 ILE A 268 GLN A 275 TRP A 305 PHE A 313 SITE 2 AC1 9 ARG A 316 LEU A 326 ALA A 327 CYS A 432 SITE 3 AC1 9 LEU A 436 SITE 1 AC2 12 PHE D 282 CYS D 285 GLN D 286 SER D 289 SITE 2 AC2 12 HIS D 323 TYR D 327 ILE D 341 MET D 364 SITE 3 AC2 12 HIS D 449 LEU D 453 TYR D 473 HOH D 768 CRYST1 53.880 66.527 165.927 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006027 0.00000