HEADER CYTOKINE 21-APR-16 5JI1 TITLE CRYSTAL STRUCTURE OF GDF8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 268-376; COMPND 5 SYNONYM: GDF-8,MYOSTATIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MSTN, GDF8; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL: CHO KEYWDS GDF8, MYOSTATIN, TGFBETA, LIGAND, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR R.G.WALKER,T.B.THOMPSON REVDAT 4 27-SEP-23 5JI1 1 REMARK REVDAT 3 25-DEC-19 5JI1 1 REMARK REVDAT 2 27-SEP-17 5JI1 1 REMARK REVDAT 1 22-MAR-17 5JI1 0 JRNL AUTH R.G.WALKER,M.CZEPNIK,E.J.GOEBEL,J.C.MCCOY,A.VUJIC,M.CHO, JRNL AUTH 2 J.OH,S.AYKUL,K.L.WALTON,G.SCHANG,D.J.BERNARD,A.P.HINCK, JRNL AUTH 3 C.A.HARRISON,E.MARTINEZ-HACKERT,A.J.WAGERS,R.T.LEE, JRNL AUTH 4 T.B.THOMPSON JRNL TITL STRUCTURAL BASIS FOR POTENCY DIFFERENCES BETWEEN GDF8 AND JRNL TITL 2 GDF11. JRNL REF BMC BIOL. V. 15 19 2017 JRNL REFN ESSN 1741-7007 JRNL PMID 28257634 JRNL DOI 10.1186/S12915-017-0350-1 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.150 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9696 - 4.3025 1.00 1954 140 0.2197 0.2521 REMARK 3 2 4.3025 - 3.4158 1.00 1846 160 0.1924 0.2601 REMARK 3 3 3.4158 - 2.9843 1.00 1809 128 0.2324 0.2567 REMARK 3 4 2.9843 - 2.7115 1.00 1823 130 0.2669 0.3158 REMARK 3 5 2.7115 - 2.5172 1.00 1780 149 0.2876 0.3308 REMARK 3 6 2.5172 - 2.3688 1.00 1799 146 0.3170 0.3528 REMARK 3 7 2.3688 - 2.2502 1.00 1780 132 0.3355 0.3478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1540 REMARK 3 ANGLE : 0.951 2076 REMARK 3 CHIRALITY : 0.039 211 REMARK 3 PLANARITY : 0.006 263 REMARK 3 DIHEDRAL : 15.274 548 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8459 -2.9145 -36.9344 REMARK 3 T TENSOR REMARK 3 T11: 0.5242 T22: 0.4650 REMARK 3 T33: 0.5403 T12: -0.0086 REMARK 3 T13: 0.0223 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.1777 L22: 2.0257 REMARK 3 L33: 2.5561 L12: 1.5311 REMARK 3 L13: 0.0617 L23: -0.1694 REMARK 3 S TENSOR REMARK 3 S11: -0.3228 S12: -0.2205 S13: 0.1671 REMARK 3 S21: -0.2765 S22: 0.4815 S23: -0.2333 REMARK 3 S31: 0.1077 S32: -0.0151 S33: -0.0035 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8798 -3.9560 -19.5276 REMARK 3 T TENSOR REMARK 3 T11: 0.4228 T22: 0.9012 REMARK 3 T33: 0.5580 T12: 0.1404 REMARK 3 T13: 0.0637 T23: 0.3913 REMARK 3 L TENSOR REMARK 3 L11: 0.2485 L22: 3.1091 REMARK 3 L33: 2.3832 L12: 0.6633 REMARK 3 L13: 0.5647 L23: 2.7146 REMARK 3 S TENSOR REMARK 3 S11: 0.1648 S12: -0.3860 S13: 0.0964 REMARK 3 S21: 0.3468 S22: 0.4530 S23: 0.4380 REMARK 3 S31: 0.1623 S32: -1.7438 S33: 0.0582 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4000 -16.7247 -31.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.8243 T22: 0.6311 REMARK 3 T33: 1.0587 T12: 0.0802 REMARK 3 T13: -0.0558 T23: 0.1081 REMARK 3 L TENSOR REMARK 3 L11: 1.0615 L22: 0.9217 REMARK 3 L33: 1.4080 L12: -0.2917 REMARK 3 L13: 0.3277 L23: -0.0661 REMARK 3 S TENSOR REMARK 3 S11: 0.2110 S12: 0.2036 S13: -1.8365 REMARK 3 S21: -0.8520 S22: 0.5250 S23: 0.1244 REMARK 3 S31: 1.2881 S32: 0.3216 S33: 0.0221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7399 -6.8289 -11.6846 REMARK 3 T TENSOR REMARK 3 T11: 0.5008 T22: 0.7515 REMARK 3 T33: 0.4644 T12: 0.0010 REMARK 3 T13: -0.0328 T23: 0.2023 REMARK 3 L TENSOR REMARK 3 L11: 3.6728 L22: 2.0357 REMARK 3 L33: 3.7236 L12: 1.9902 REMARK 3 L13: 2.2101 L23: -0.2005 REMARK 3 S TENSOR REMARK 3 S11: 0.3680 S12: -1.3114 S13: 0.1545 REMARK 3 S21: 0.3674 S22: -0.1337 S23: -0.0760 REMARK 3 S31: -0.0597 S32: 0.4090 S33: 0.0827 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9255 -33.9605 -38.4001 REMARK 3 T TENSOR REMARK 3 T11: 0.7993 T22: 0.8659 REMARK 3 T33: 0.4930 T12: -0.1010 REMARK 3 T13: -0.0100 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 0.5594 L22: 2.2812 REMARK 3 L33: 0.9341 L12: 0.6060 REMARK 3 L13: 0.2120 L23: -0.6022 REMARK 3 S TENSOR REMARK 3 S11: -0.2009 S12: 1.1551 S13: -0.6155 REMARK 3 S21: -0.3266 S22: 0.4358 S23: 0.1198 REMARK 3 S31: 0.5889 S32: -0.4037 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0410 -32.4864 -25.2871 REMARK 3 T TENSOR REMARK 3 T11: 0.4303 T22: 0.3538 REMARK 3 T33: 0.4716 T12: -0.0444 REMARK 3 T13: 0.0516 T23: -0.1546 REMARK 3 L TENSOR REMARK 3 L11: 2.3529 L22: 2.3727 REMARK 3 L33: 1.9838 L12: 0.5981 REMARK 3 L13: -1.2817 L23: 0.4026 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.7263 S13: -0.3075 REMARK 3 S21: 0.0948 S22: 0.9503 S23: 0.2524 REMARK 3 S31: -0.6868 S32: 1.1702 S33: 0.0597 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9932 -32.1007 -12.0379 REMARK 3 T TENSOR REMARK 3 T11: 0.4994 T22: 0.8146 REMARK 3 T33: 0.3662 T12: -0.1723 REMARK 3 T13: -0.0812 T23: -0.4185 REMARK 3 L TENSOR REMARK 3 L11: 0.1155 L22: 2.3496 REMARK 3 L33: 1.5670 L12: -0.2093 REMARK 3 L13: -0.1517 L23: -1.2349 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: -1.0768 S13: 0.9590 REMARK 3 S21: 0.6404 S22: -0.7242 S23: -0.8119 REMARK 3 S31: -1.4047 S32: 1.2122 S33: -0.3084 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2068 -32.8245 -26.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.3892 REMARK 3 T33: 0.3511 T12: 0.0105 REMARK 3 T13: 0.0198 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 1.4866 L22: 1.6104 REMARK 3 L33: 1.2144 L12: 1.0403 REMARK 3 L13: -0.4619 L23: 0.6504 REMARK 3 S TENSOR REMARK 3 S11: -0.1789 S12: -0.0298 S13: 0.3827 REMARK 3 S21: -0.0046 S22: 0.4035 S23: -0.1184 REMARK 3 S31: 0.0567 S32: 0.8575 S33: -0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3216 -17.5052 -31.9384 REMARK 3 T TENSOR REMARK 3 T11: 1.0352 T22: 0.6176 REMARK 3 T33: 1.0388 T12: -0.1226 REMARK 3 T13: -0.0570 T23: 0.2071 REMARK 3 L TENSOR REMARK 3 L11: 0.5021 L22: 0.3132 REMARK 3 L33: 0.9631 L12: -0.2005 REMARK 3 L13: -0.4941 L23: 0.4703 REMARK 3 S TENSOR REMARK 3 S11: -0.4883 S12: 0.9715 S13: 0.2224 REMARK 3 S21: -0.2342 S22: -0.8874 S23: 1.3046 REMARK 3 S31: -1.4168 S32: -0.4565 S33: -0.0245 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1059 -31.0219 -17.0258 REMARK 3 T TENSOR REMARK 3 T11: 0.4969 T22: 0.3824 REMARK 3 T33: 0.5104 T12: -0.0637 REMARK 3 T13: 0.0036 T23: -0.1191 REMARK 3 L TENSOR REMARK 3 L11: 2.2527 L22: 0.7080 REMARK 3 L33: 0.7726 L12: 0.5782 REMARK 3 L13: -0.1895 L23: 0.5858 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -0.9351 S13: 0.3663 REMARK 3 S21: 0.2050 S22: -0.0801 S23: 0.2080 REMARK 3 S31: -0.4208 S32: -0.2802 S33: -0.0054 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5113 -28.0531 0.8805 REMARK 3 T TENSOR REMARK 3 T11: 1.0022 T22: 1.6733 REMARK 3 T33: 1.0945 T12: -0.2192 REMARK 3 T13: 0.1134 T23: -0.2557 REMARK 3 L TENSOR REMARK 3 L11: 1.4341 L22: 0.3885 REMARK 3 L33: 0.0093 L12: -0.7496 REMARK 3 L13: -0.1216 L23: 0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.3055 S12: -0.8381 S13: 0.2626 REMARK 3 S21: -0.0023 S22: 0.5579 S23: 0.1175 REMARK 3 S31: -0.6376 S32: -0.0749 S33: -0.0113 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7647 -30.7252 -18.4776 REMARK 3 T TENSOR REMARK 3 T11: 0.3503 T22: 0.4018 REMARK 3 T33: 0.4119 T12: 0.0084 REMARK 3 T13: 0.0694 T23: -0.1128 REMARK 3 L TENSOR REMARK 3 L11: 4.5827 L22: 2.9645 REMARK 3 L33: 2.9722 L12: 1.9449 REMARK 3 L13: -1.5786 L23: 1.3065 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: -1.2089 S13: 0.2646 REMARK 3 S21: 0.0553 S22: 0.0327 S23: 0.4824 REMARK 3 S31: -0.7163 S32: -0.9712 S33: 0.0954 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 774 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3HH2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM 2-(N-MORPHOLINO)ETHANESULFONIC REMARK 280 ACID PH 6.0, 40% 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.80300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.77200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.77200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.80300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 51 REMARK 465 LEU A 52 REMARK 465 GLN A 53 REMARK 465 LYS A 54 REMARK 465 TYR A 55 REMARK 465 PRO A 56 REMARK 465 HIS A 57 REMARK 465 THR A 58 REMARK 465 HIS A 59 REMARK 465 LEU A 60 REMARK 465 VAL A 61 REMARK 465 HIS A 62 REMARK 465 GLN A 63 REMARK 465 ALA A 64 REMARK 465 PHE B 49 REMARK 465 VAL B 50 REMARK 465 PHE B 51 REMARK 465 LEU B 52 REMARK 465 GLN B 53 REMARK 465 LYS B 54 REMARK 465 TYR B 55 REMARK 465 PRO B 56 REMARK 465 HIS B 57 REMARK 465 THR B 58 REMARK 465 HIS B 59 REMARK 465 LEU B 60 REMARK 465 VAL B 61 REMARK 465 HIS B 62 REMARK 465 GLN B 63 REMARK 465 ALA B 64 REMARK 465 ASN B 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 1 CG OD1 OD2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 50 CG1 CG2 REMARK 470 SER A 69 OG REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 SER B 69 OG REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 23 NH1 ARG A 37 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 29 78.50 -66.70 REMARK 500 ASN A 41 171.75 63.34 REMARK 500 PHE A 49 119.75 -160.83 REMARK 500 PRO A 66 -1.69 -54.78 REMARK 500 TRP B 29 75.66 -67.27 REMARK 500 ASN B 41 172.74 65.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JHW RELATED DB: PDB DBREF 5JI1 A 1 109 UNP O08689 GDF8_MOUSE 268 376 DBREF 5JI1 B 1 109 UNP O08689 GDF8_MOUSE 268 376 SEQRES 1 A 109 ASP PHE GLY LEU ASP CYS ASP GLU HIS SER THR GLU SER SEQRES 2 A 109 ARG CYS CYS ARG TYR PRO LEU THR VAL ASP PHE GLU ALA SEQRES 3 A 109 PHE GLY TRP ASP TRP ILE ILE ALA PRO LYS ARG TYR LYS SEQRES 4 A 109 ALA ASN TYR CYS SER GLY GLU CYS GLU PHE VAL PHE LEU SEQRES 5 A 109 GLN LYS TYR PRO HIS THR HIS LEU VAL HIS GLN ALA ASN SEQRES 6 A 109 PRO ARG GLY SER ALA GLY PRO CYS CYS THR PRO THR LYS SEQRES 7 A 109 MET SER PRO ILE ASN MET LEU TYR PHE ASN GLY LYS GLU SEQRES 8 A 109 GLN ILE ILE TYR GLY LYS ILE PRO ALA MET VAL VAL ASP SEQRES 9 A 109 ARG CYS GLY CYS SER SEQRES 1 B 109 ASP PHE GLY LEU ASP CYS ASP GLU HIS SER THR GLU SER SEQRES 2 B 109 ARG CYS CYS ARG TYR PRO LEU THR VAL ASP PHE GLU ALA SEQRES 3 B 109 PHE GLY TRP ASP TRP ILE ILE ALA PRO LYS ARG TYR LYS SEQRES 4 B 109 ALA ASN TYR CYS SER GLY GLU CYS GLU PHE VAL PHE LEU SEQRES 5 B 109 GLN LYS TYR PRO HIS THR HIS LEU VAL HIS GLN ALA ASN SEQRES 6 B 109 PRO ARG GLY SER ALA GLY PRO CYS CYS THR PRO THR LYS SEQRES 7 B 109 MET SER PRO ILE ASN MET LEU TYR PHE ASN GLY LYS GLU SEQRES 8 B 109 GLN ILE ILE TYR GLY LYS ILE PRO ALA MET VAL VAL ASP SEQRES 9 B 109 ARG CYS GLY CYS SER HET MPD A 201 8 HET MPD A 202 8 HET MPD A 203 8 HET MPD A 204 8 HET MPD B 201 8 HET MPD B 202 8 HET MPD B 203 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MPD 7(C6 H14 O2) FORMUL 10 HOH *30(H2 O) HELIX 1 AA1 PHE A 24 GLY A 28 1 5 HELIX 2 AA2 PHE B 24 GLY B 28 1 5 SHEET 1 AA1 2 CYS A 16 TYR A 18 0 SHEET 2 AA1 2 TYR A 42 SER A 44 -1 O SER A 44 N CYS A 16 SHEET 1 AA2 2 THR A 21 ASP A 23 0 SHEET 2 AA2 2 ARG A 37 LYS A 39 -1 O TYR A 38 N VAL A 22 SHEET 1 AA3 3 ILE A 32 ALA A 34 0 SHEET 2 AA3 3 CYS A 73 PHE A 87 -1 O LEU A 85 N ALA A 34 SHEET 3 AA3 3 ILE A 93 SER A 109 -1 O ILE A 94 N TYR A 86 SHEET 1 AA4 2 CYS B 16 TYR B 18 0 SHEET 2 AA4 2 TYR B 42 SER B 44 -1 O SER B 44 N CYS B 16 SHEET 1 AA5 2 THR B 21 ASP B 23 0 SHEET 2 AA5 2 ARG B 37 LYS B 39 -1 O TYR B 38 N VAL B 22 SHEET 1 AA6 3 ILE B 32 ALA B 34 0 SHEET 2 AA6 3 CYS B 74 PHE B 87 -1 O LEU B 85 N ALA B 34 SHEET 3 AA6 3 ILE B 93 CYS B 108 -1 O ILE B 94 N TYR B 86 SSBOND 1 CYS A 6 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 74 1555 1555 2.04 SSBOND 3 CYS A 43 CYS A 106 1555 1555 2.03 SSBOND 4 CYS A 47 CYS A 108 1555 1555 2.03 SSBOND 5 CYS A 73 CYS B 73 1555 1555 2.04 SSBOND 6 CYS B 6 CYS B 16 1555 1555 2.03 SSBOND 7 CYS B 15 CYS B 74 1555 1555 2.03 SSBOND 8 CYS B 43 CYS B 106 1555 1555 2.03 SSBOND 9 CYS B 47 CYS B 108 1555 1555 2.03 CISPEP 1 ALA A 34 PRO A 35 0 -0.43 CISPEP 2 ALA B 34 PRO B 35 0 -3.12 SITE 1 AC1 2 TRP A 31 MET A 84 SITE 1 AC2 3 PRO A 76 LYS A 78 MET A 79 SITE 1 AC3 5 ALA A 34 PRO A 35 LYS A 36 MPD A 204 SITE 2 AC3 5 ARG B 14 SITE 1 AC4 1 MPD A 203 SITE 1 AC5 4 ALA B 26 PHE B 27 LYS B 78 MET B 79 SITE 1 AC6 1 MET B 84 SITE 1 AC7 1 TYR B 42 CRYST1 29.606 77.739 119.544 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008365 0.00000