HEADER DE NOVO PROTEIN 21-APR-16 5JI4 TITLE SOLUTION STRUCTURE OF THE DE NOVO MINI PROTEIN GEEHE_02 COMPND MOL_ID: 1; COMPND 2 MOLECULE: W37; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DE NOVO MINIPROTEIN EEHE_02; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DRUG DESIGN, DISULFIDE-RICH, PEPTIDE DESIGN, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,C.D.BAHL,S.V.PULAVARTI,D.BAKER,T.SZYPERSKI REVDAT 4 14-JUN-23 5JI4 1 COMPND JRNL REMARK REVDAT 3 02-NOV-16 5JI4 1 JRNL REVDAT 2 26-OCT-16 5JI4 1 JRNL REVDAT 1 28-SEP-16 5JI4 0 JRNL AUTH G.BHARDWAJ,V.K.MULLIGAN,C.D.BAHL,J.M.GILMORE,P.J.HARVEY, JRNL AUTH 2 O.CHENEVAL,G.W.BUCHKO,S.V.PULAVARTI,Q.KAAS,A.ELETSKY, JRNL AUTH 3 P.S.HUANG,W.A.JOHNSEN,P.J.GREISEN,G.J.ROCKLIN,Y.SONG, JRNL AUTH 4 T.W.LINSKY,A.WATKINS,S.A.RETTIE,X.XU,L.P.CARTER,R.BONNEAU, JRNL AUTH 5 J.M.OLSON,E.COUTSIAS,C.E.CORRENTI,T.SZYPERSKI,D.J.CRAIK, JRNL AUTH 6 D.BAKER JRNL TITL ACCURATE DE NOVO DESIGN OF HYPERSTABLE CONSTRAINED PEPTIDES. JRNL REF NATURE V. 538 329 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27626386 JRNL DOI 10.1038/NATURE19791 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL REMARK 3 OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) REMARK 3 AFTER ADDING 0% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE REMARK 3 RESTRAINTS AND THE VDW LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS REMARK 3 USED FOR THE WATER REFINEMENT CALCULATIONS. REMARK 4 REMARK 4 5JI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220451. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 75 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] W37, 50 MM REMARK 210 SODIUM CHLORIDE, 25 MM SODIUM REMARK 210 ACETATE, 93% H2O/7% D2O; 1 MM [U- REMARK 210 99% 15N] W37, 50 MM SODIUM REMARK 210 CHLORIDE, 25 MM SODIUM ACETATE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 DEUTERIUM EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007, CYANA 2.1, SPARKY REMARK 210 3.115, PSVS 1.5 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 31 97.08 -66.65 REMARK 500 2 ASN A 8 -68.77 68.93 REMARK 500 2 ASN A 31 98.96 -69.03 REMARK 500 3 ASN A 8 -22.14 69.83 REMARK 500 4 PRO A 2 49.10 -80.27 REMARK 500 5 ASN A 8 -27.62 69.56 REMARK 500 5 SER A 15 -76.45 -64.03 REMARK 500 5 ASN A 31 91.10 -69.20 REMARK 500 6 ASN A 8 -0.29 64.46 REMARK 500 6 ASN A 31 48.04 -80.33 REMARK 500 10 PRO A 2 -157.34 -71.58 REMARK 500 10 ASN A 8 10.09 56.35 REMARK 500 11 ASN A 31 78.08 -69.15 REMARK 500 12 ASN A 8 19.62 57.82 REMARK 500 14 PRO A 2 -107.94 -91.19 REMARK 500 15 PRO A 2 -159.13 -80.11 REMARK 500 16 PRO A 2 -174.03 -67.54 REMARK 500 19 PRO A 2 -172.15 -65.09 REMARK 500 20 PRO A 2 -114.57 -81.74 REMARK 500 20 CYS A 3 106.16 -177.48 REMARK 500 20 ASN A 8 -1.87 65.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30069 RELATED DB: BMRB DBREF 5JI4 A 1 37 PDB 5JI4 5JI4 1 37 SEQRES 1 A 37 ALA PRO CYS GLU CYS ASP VAL ASN GLY GLU THR TYR THR SEQRES 2 A 37 VAL SER SER SER GLU GLU CYS GLU ARG LEU CYS ARG LYS SEQRES 3 A 37 LEU GLY VAL THR ASN CYS ARG VAL HIS CYS GLY HELIX 1 AA1 SER A 16 GLY A 28 1 13 SHEET 1 AA1 3 GLU A 10 VAL A 14 0 SHEET 2 AA1 3 CYS A 3 VAL A 7 -1 N CYS A 5 O TYR A 12 SHEET 3 AA1 3 CYS A 32 CYS A 36 -1 O HIS A 35 N GLU A 4 SSBOND 1 CYS A 3 CYS A 36 1555 1555 2.04 SSBOND 2 CYS A 5 CYS A 20 1555 1555 2.03 SSBOND 3 CYS A 24 CYS A 32 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1