HEADER HYDROLASE 21-APR-16 5JI5 TITLE CRYSTAL STRUCTURE OF A HISTONE DEACETYLASE SUPERFAMILY PROTEIN FROM TITLE 2 BURKHOLDERIA PHYMATUMPHYMATUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUPHA.10154.A.B1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BUPHA.10154.A.B1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PHYMATUM (STRAIN DSM 17167 / SOURCE 3 STM815); SOURCE 4 ORGANISM_TAXID: 391038; SOURCE 5 STRAIN: DSM 17167 / STM815; SOURCE 6 GENE: BPHY_0756; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BUPHA.10154.A.B1 KEYWDS SSGCID, HISTONE DEACETYLASE SUPERFAMILY, BURKHOLDERIA PHYMATUM, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5JI5 1 REMARK LINK REVDAT 1 04-MAY-16 5JI5 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A HISTONE DEACETYLASE SUPERFAMILY JRNL TITL 2 PROTEIN FROM BURKHOLDERIA PHYMATUMPHYMATUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2356 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 16662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8081 - 4.8063 0.97 1365 150 0.1730 0.2123 REMARK 3 2 4.8063 - 3.8154 0.99 1312 142 0.1491 0.1641 REMARK 3 3 3.8154 - 3.3333 0.98 1301 145 0.1556 0.2361 REMARK 3 4 3.3333 - 3.0286 0.96 1258 137 0.1688 0.2440 REMARK 3 5 3.0286 - 2.8115 0.95 1257 137 0.1827 0.2402 REMARK 3 6 2.8115 - 2.6458 0.96 1239 133 0.1786 0.2281 REMARK 3 7 2.6458 - 2.5133 0.95 1240 140 0.1726 0.2683 REMARK 3 8 2.5133 - 2.4039 0.95 1225 138 0.1756 0.2642 REMARK 3 9 2.4039 - 2.3114 0.96 1223 136 0.1718 0.2652 REMARK 3 10 2.3114 - 2.2316 0.94 1223 136 0.1754 0.2686 REMARK 3 11 2.2316 - 2.1618 0.93 1194 132 0.1740 0.3138 REMARK 3 12 2.1618 - 2.1000 0.90 1181 118 0.1842 0.2736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2392 REMARK 3 ANGLE : 0.963 3256 REMARK 3 CHIRALITY : 0.054 355 REMARK 3 PLANARITY : 0.006 434 REMARK 3 DIHEDRAL : 12.904 1416 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0399 47.3535 25.0132 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2317 REMARK 3 T33: 0.0762 T12: -0.0062 REMARK 3 T13: -0.0284 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6438 L22: 1.6603 REMARK 3 L33: 1.3413 L12: -0.1615 REMARK 3 L13: 0.4958 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: 0.2788 S13: 0.0663 REMARK 3 S21: -0.2315 S22: -0.0198 S23: 0.0703 REMARK 3 S31: -0.1048 S32: -0.1630 S33: 0.0951 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9345 53.6408 37.7615 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.1674 REMARK 3 T33: 0.1267 T12: -0.0230 REMARK 3 T13: -0.0297 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.4141 L22: 1.5556 REMARK 3 L33: 2.6109 L12: 0.0860 REMARK 3 L13: -0.3566 L23: 0.5153 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.1407 S13: 0.1479 REMARK 3 S21: -0.0736 S22: 0.0161 S23: -0.2233 REMARK 3 S31: -0.0868 S32: 0.2071 S33: 0.0072 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3877 45.2100 44.0596 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.1603 REMARK 3 T33: 0.1076 T12: -0.0006 REMARK 3 T13: -0.0215 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.2914 L22: 0.8099 REMARK 3 L33: 1.0789 L12: 0.2160 REMARK 3 L13: -0.2396 L23: -0.1562 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0561 S13: -0.0135 REMARK 3 S21: 0.0377 S22: -0.0099 S23: 0.0119 REMARK 3 S31: -0.0128 S32: -0.1081 S33: -0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8372 37.7011 38.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.2316 REMARK 3 T33: 0.1117 T12: -0.0426 REMARK 3 T13: -0.0219 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8081 L22: 1.2306 REMARK 3 L33: 1.7905 L12: -0.0852 REMARK 3 L13: -0.3155 L23: 0.4703 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.0077 S13: -0.0804 REMARK 3 S21: -0.0652 S22: -0.0041 S23: 0.0849 REMARK 3 S31: 0.0808 S32: -0.2205 S33: 0.0197 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: 1ZZ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPHA.10154.A.B1.PS37854 AT 20.7 MG/ML REMARK 280 WAS MIXED 1:1 WITH MCSG1(F11) 0.2 M AMMONIUM SULFATE, 0.1 M REMARK 280 HEPES:NAOH, PH = 7.5, 25% (W/V) PEG-3350, CRYOPROTECTED WITH 20% REMARK 280 ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.93500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.93500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.34000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.93500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.34000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.93500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 604 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 644 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 14.72 58.56 REMARK 500 VAL A 59 -52.39 -121.50 REMARK 500 PRO A 88 1.26 -65.63 REMARK 500 PHE A 135 -0.14 80.32 REMARK 500 GLU A 285 -114.12 -104.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 163 OD2 REMARK 620 2 HIS A 165 ND1 105.0 REMARK 620 3 ASP A 244 OD2 103.3 102.6 REMARK 620 4 HOH A 503 O 144.9 105.8 86.1 REMARK 620 5 HOH A 523 O 88.2 107.8 143.4 66.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 163 O REMARK 620 2 HIS A 165 O 75.7 REMARK 620 3 ILE A 185 O 71.1 130.7 REMARK 620 4 HOH A 536 O 162.9 106.5 96.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPHA.10154.A RELATED DB: TARGETTRACK DBREF 5JI5 A 1 307 UNP B2JF16 B2JF16_BURP8 1 307 SEQADV 5JI5 MET A -7 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 ALA A -6 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 HIS A -5 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 HIS A -4 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 HIS A -3 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 HIS A -2 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 HIS A -1 UNP B2JF16 EXPRESSION TAG SEQADV 5JI5 HIS A 0 UNP B2JF16 EXPRESSION TAG SEQRES 1 A 315 MET ALA HIS HIS HIS HIS HIS HIS MET ALA THR GLY PHE SEQRES 2 A 315 TYR SER HIS ALA ASP CYS LEU GLN HIS GLU MET GLY GLN SEQRES 3 A 315 TRP HIS PRO GLU CYS PRO ALA ARG LEU GLN ALA ILE GLU SEQRES 4 A 315 ASP GLN LEU ILE ALA SER ARG ILE GLY GLU LEU ILE GLU SEQRES 5 A 315 ARG GLU SER ALA PRO LEU ALA ASP GLU ALA ALA LEU LEU SEQRES 6 A 315 ARG VAL HIS THR LYS ALA HIS VAL ASP TYR LEU ARG ALA SEQRES 7 A 315 ARG SER PRO GLN SER GLY TYR ALA GLU ILE ASP PRO ASP SEQRES 8 A 315 THR SER MET ASN PRO HIS THR TRP THR ALA ALA LEU ARG SEQRES 9 A 315 ALA ALA GLY ALA ALA VAL ALA ALA THR ASP ALA VAL ILE SEQRES 10 A 315 GLU GLY ARG TYR ASP ASN ALA PHE CYS SER VAL ARG PRO SEQRES 11 A 315 PRO GLY HIS HIS ALA GLU PRO ALA ARG ALA MET GLY PHE SEQRES 12 A 315 CYS PHE PHE ASN ASN VAL ALA ILE ALA ALA ARG HIS ALA SEQRES 13 A 315 LEU GLU VAL HIS LYS LEU GLU ARG VAL ALA ILE ILE ASP SEQRES 14 A 315 PHE ASP VAL HIS HIS GLY ASN GLY THR GLU ALA ALA PHE SEQRES 15 A 315 SER ASN ASP ALA ARG VAL LEU MET CYS SER ILE PHE GLN SEQRES 16 A 315 HIS PRO PHE TYR PRO PHE THR GLY ALA ASP ASN GLN ALA SEQRES 17 A 315 PRO ASN MET CYS ASN VAL PRO ILE ALA ALA ARG SER LYS SEQRES 18 A 315 GLY MET VAL VAL ARG GLU ALA ILE ASP MET ILE TRP LEU SEQRES 19 A 315 PRO ARG LEU ASP ALA PHE LYS PRO GLN MET LEU PHE VAL SEQRES 20 A 315 SER ALA GLY PHE ASP ALA HIS ARG GLU ASP ASP LEU GLY SEQRES 21 A 315 ASN MET ALA LEU VAL GLU ASP ASP TYR ALA TRP ILE THR SEQRES 22 A 315 GLN GLN ILE ARG LEU VAL ALA ASP LYS TYR ALA LYS GLY SEQRES 23 A 315 ARG ILE VAL SER CYS LEU GLU GLY GLY TYR ASN LEU SER SEQRES 24 A 315 ALA LEU GLY ARG SER VAL VAL ALA HIS VAL ARG ALA LEU SEQRES 25 A 315 ALA ASP ILE HET ZN A 401 1 HET SO4 A 402 5 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET NA A 406 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 NA NA 1+ FORMUL 8 HOH *156(H2 O) HELIX 1 AA1 ALA A 9 HIS A 14 1 6 HELIX 2 AA2 PRO A 24 SER A 37 1 14 HELIX 3 AA3 ARG A 38 LEU A 42 5 5 HELIX 4 AA4 ASP A 52 ARG A 58 1 7 HELIX 5 AA5 THR A 61 SER A 72 1 12 HELIX 6 AA6 HIS A 89 GLU A 110 1 22 HELIX 7 AA7 ASN A 139 VAL A 151 1 13 HELIX 8 AA8 GLY A 167 SER A 175 1 9 HELIX 9 AA9 LYS A 213 LYS A 233 1 21 HELIX 10 AB1 VAL A 257 ALA A 276 1 20 HELIX 11 AB2 ASN A 289 ASP A 306 1 18 SHEET 1 AA1 8 GLU A 44 SER A 47 0 SHEET 2 AA1 8 THR A 3 SER A 7 1 N PHE A 5 O GLU A 46 SHEET 3 AA1 8 ASN A 115 CYS A 118 1 O PHE A 117 N TYR A 6 SHEET 4 AA1 8 ILE A 280 LEU A 284 1 O SER A 282 N CYS A 118 SHEET 5 AA1 8 LEU A 237 ALA A 241 1 N VAL A 239 O CYS A 283 SHEET 6 AA1 8 VAL A 157 ASP A 161 1 N ILE A 160 O PHE A 238 SHEET 7 AA1 8 VAL A 180 GLN A 187 1 O LEU A 181 N ILE A 159 SHEET 8 AA1 8 MET A 203 ILE A 208 1 O CYS A 204 N MET A 182 SHEET 1 AA2 2 ALA A 78 ASP A 81 0 SHEET 2 AA2 2 THR A 84 MET A 86 -1 O THR A 84 N ILE A 80 LINK OD2 ASP A 163 ZN ZN A 401 1555 1555 2.10 LINK O ASP A 163 NA NA A 406 1555 1555 2.90 LINK ND1 HIS A 165 ZN ZN A 401 1555 1555 2.02 LINK O HIS A 165 NA NA A 406 1555 1555 2.76 LINK O ILE A 185 NA NA A 406 1555 1555 2.61 LINK OD2 ASP A 244 ZN ZN A 401 1555 1555 2.12 LINK ZN ZN A 401 O HOH A 503 1555 1555 2.38 LINK ZN ZN A 401 O HOH A 523 1555 1555 2.33 LINK NA NA A 406 O HOH A 536 1555 1555 2.66 CISPEP 1 ARG A 121 PRO A 122 0 0.99 CISPEP 2 HIS A 188 PRO A 189 0 -5.41 CISPEP 3 TYR A 191 PRO A 192 0 7.35 SITE 1 AC1 6 ASP A 163 HIS A 165 ASP A 244 EDO A 403 SITE 2 AC1 6 HOH A 503 HOH A 523 SITE 1 AC2 2 ARG A 71 HOH A 610 SITE 1 AC3 9 HIS A 126 GLY A 134 HIS A 165 TYR A 191 SITE 2 AC3 9 TYR A 288 ZN A 401 HOH A 501 HOH A 503 SITE 3 AC3 9 HOH A 523 SITE 1 AC4 3 SER A 7 HIS A 8 ALA A 9 SITE 1 AC5 7 ALA A 63 HIS A 64 ARG A 146 ASP A 177 SITE 2 AC5 7 HOH A 521 HOH A 522 HOH A 570 SITE 1 AC6 7 ASP A 161 ASP A 163 HIS A 165 HIS A 166 SITE 2 AC6 7 ILE A 185 PHE A 186 HOH A 536 CRYST1 66.380 127.870 68.680 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014560 0.00000