HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-APR-16 5JIC TITLE STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A TITLE 2 PANTOTHENATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II PANTOTHENATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANK-II,PANTOTHENIC ACID KINASE; COMPND 5 EC: 2.7.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN MW2); SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: COAW, MW2054; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PANTOTHENAMIDE, INHIBITOR, ANTIMICROBIAL, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HUGHES,T.ANTOSHCHENKO,K.MOTTAGHI,L.BARNARD,E.STRAUSS,H.PARK REVDAT 3 27-SEP-23 5JIC 1 REMARK LINK REVDAT 2 02-NOV-16 5JIC 1 JRNL REVDAT 1 10-AUG-16 5JIC 0 JRNL AUTH S.J.HUGHES,L.BARNARD,K.MOTTAGHI,W.TEMPEL,T.ANTOSHCHENKO, JRNL AUTH 2 B.S.HONG,A.ALLALI-HASSANI,D.SMIL,M.VEDADI,E.STRAUSS,H.W.PARK JRNL TITL DISCOVERY OF POTENT PANTOTHENAMIDE INHIBITORS OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS PANTOTHENATE KINASE THROUGH A MINIMAL JRNL TITL 3 SAR STUDY: INHIBITION IS DUE TO TRAPPING OF THE PRODUCT. JRNL REF ACS INFECT DIS. V. 2 627 2016 JRNL REFN ESSN 2373-8227 JRNL PMID 27759386 JRNL DOI 10.1021/ACSINFECDIS.6B00090 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2358 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2242 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3224 ; 1.300 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5155 ; 0.750 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;39.617 ;24.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;10.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2779 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 569 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1163 ; 1.155 ; 1.784 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1162 ; 1.150 ; 1.781 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1478 ; 1.658 ; 2.677 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4600 ; 2.148 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 90 ;21.040 ;10.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4779 ;12.786 ;10.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5JIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57601 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.1.03 REMARK 200 STARTING MODEL: 4M7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 UL PROTEIN + 0.5 UL BUFFER (35% REMARK 280 PEG3350, 0.1 M TRIS, 0.2 M MAGNESIUM CHLORIDE, PH 8.5), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.97350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.97350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.69350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.37300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.69350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.37300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.97350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.69350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.37300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.97350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.69350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.37300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 18 REMARK 465 ASP A 19 REMARK 465 ASN A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 157 O HOH A 401 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 79.31 -113.42 REMARK 500 ASP A 88 79.66 -116.98 REMARK 500 ASP A 88 77.73 -118.64 REMARK 500 GLN A 133 15.71 58.97 REMARK 500 LYS A 161 -111.76 58.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 727 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 302 O2B REMARK 620 2 N7E A 303 O03 98.2 REMARK 620 3 HOH A 424 O 87.5 172.3 REMARK 620 4 HOH A 431 O 175.5 86.2 88.2 REMARK 620 5 HOH A 487 O 92.4 86.7 87.8 88.8 REMARK 620 6 HOH A 491 O 92.4 99.0 85.9 86.0 172.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N7E A 303 DBREF 5JIC A 1 267 UNP Q8NVG0 COAW_STAAW 1 267 SEQADV 5JIC HIS A 268 UNP Q8NVG0 EXPRESSION TAG SEQADV 5JIC HIS A 269 UNP Q8NVG0 EXPRESSION TAG SEQADV 5JIC HIS A 270 UNP Q8NVG0 EXPRESSION TAG SEQADV 5JIC HIS A 271 UNP Q8NVG0 EXPRESSION TAG SEQADV 5JIC HIS A 272 UNP Q8NVG0 EXPRESSION TAG SEQADV 5JIC HIS A 273 UNP Q8NVG0 EXPRESSION TAG SEQRES 1 A 273 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 A 273 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 A 273 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 A 273 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 A 273 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 A 273 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 A 273 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 A 273 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 A 273 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 A 273 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 A 273 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 A 273 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 A 273 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 A 273 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 A 273 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 A 273 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 A 273 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 A 273 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 A 273 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 A 273 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 A 273 GLY ALA LEU TYR LEU GLU LYS HIS HIS HIS HIS HIS HIS HET MG A 301 1 HET ADP A 302 27 HET N7E A 303 26 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM N7E N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 N7E BUTANOYL]-N-(5-METHOXYPENTYL)-BETA-ALANINAMIDE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 N7E C15 H31 N2 O8 P FORMUL 5 HOH *328(H2 O) HELIX 1 AA1 ASN A 31 GLN A 41 1 11 HELIX 2 AA2 ASN A 53 ASN A 60 1 8 HELIX 3 AA3 VAL A 69 GLN A 85 1 17 HELIX 4 AA4 GLY A 120 GLN A 133 1 14 HELIX 5 AA5 ASP A 136 GLN A 145 1 10 HELIX 6 AA6 VAL A 156 LYS A 161 1 6 HELIX 7 AA7 HIS A 178 HIS A 182 5 5 HELIX 8 AA8 THR A 188 LYS A 216 1 29 HELIX 9 AA9 GLY A 224 HIS A 228 5 5 HELIX 10 AB1 ASN A 230 ARG A 244 1 15 HELIX 11 AB2 ASN A 253 ALA A 255 5 3 HELIX 12 AB3 PHE A 256 HIS A 270 1 15 SHEET 1 AA1 5 THR A 23 LEU A 28 0 SHEET 2 AA1 5 LEU A 11 GLN A 16 -1 N ILE A 12 O GLU A 27 SHEET 3 AA1 5 VAL A 3 ALA A 7 -1 N GLY A 4 O VAL A 15 SHEET 4 AA1 5 LEU A 47 THR A 50 1 O THR A 50 N ALA A 7 SHEET 5 AA1 5 ALA A 65 ILE A 67 1 O GLN A 66 N LEU A 49 SHEET 1 AA2 5 GLN A 111 ILE A 117 0 SHEET 2 AA2 5 THR A 101 PHE A 106 -1 N LEU A 103 O GLY A 115 SHEET 3 AA2 5 TYR A 92 VAL A 97 -1 N TYR A 92 O PHE A 106 SHEET 4 AA2 5 ASN A 219 ILE A 223 1 O VAL A 221 N ILE A 93 SHEET 5 AA2 5 LYS A 247 TYR A 250 1 O TYR A 249 N TYR A 222 SHEET 1 AA3 2 LEU A 154 LYS A 155 0 SHEET 2 AA3 2 THR A 172 ALA A 174 -1 O ALA A 173 N LEU A 154 LINK MG MG A 301 O2B ADP A 302 1555 1555 2.03 LINK MG MG A 301 O03 N7E A 303 1555 1555 1.93 LINK MG MG A 301 O HOH A 424 1555 1555 2.06 LINK MG MG A 301 O HOH A 431 1555 1555 2.11 LINK MG MG A 301 O HOH A 487 1555 1555 2.12 LINK MG MG A 301 O HOH A 491 1555 1555 2.13 SITE 1 AC1 6 ADP A 302 N7E A 303 HOH A 424 HOH A 431 SITE 2 AC1 6 HOH A 487 HOH A 491 SITE 1 AC2 23 GLY A 8 GLY A 9 THR A 10 LEU A 11 SITE 2 AC2 23 LYS A 13 LEU A 28 GLY A 98 THR A 99 SITE 3 AC2 23 GLY A 121 GLY A 122 GLN A 125 TYR A 137 SITE 4 AC2 23 GLY A 224 SER A 225 SER A 226 HIS A 228 SITE 5 AC2 23 MG A 301 N7E A 303 HOH A 424 HOH A 465 SITE 6 AC2 23 HOH A 487 HOH A 491 HOH A 548 SITE 1 AC3 23 GLY A 9 GLU A 70 THR A 99 GLY A 100 SITE 2 AC3 23 THR A 101 SER A 102 ARG A 113 GLY A 116 SITE 3 AC3 23 ILE A 117 ASP A 170 LEU A 171 THR A 172 SITE 4 AC3 23 ALA A 173 GLU A 202 TYR A 240 MG A 301 SITE 5 AC3 23 ADP A 302 HOH A 431 HOH A 442 HOH A 451 SITE 6 AC3 23 HOH A 487 HOH A 491 HOH A 599 CRYST1 57.387 136.746 73.947 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017426 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013523 0.00000