HEADER TRANSFERASE 22-APR-16 5JIJ TITLE STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE TREHALOSE-6-PHOSPHATE TITLE 2 SYNTHASE (APO FORM). COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 ATCC: 19527; SOURCE 5 GENE: RMCT_1906; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OTSA TREHALOSE-6-PHOSPHATE SYNTHASE, TREHALOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,N.VERMA,M.BLASZCZYK,T.L.BLUNDELL REVDAT 4 10-JAN-24 5JIJ 1 REMARK REVDAT 3 22-JAN-20 5JIJ 1 JRNL ATOM REVDAT 2 13-SEP-17 5JIJ 1 REMARK REVDAT 1 10-MAY-17 5JIJ 0 JRNL AUTH V.MENDES,M.ACEBRON-GARCIA-DE-EULATE,N.VERMA,M.BLASZCZYK, JRNL AUTH 2 M.V.B.DIAS,T.L.BLUNDELL JRNL TITL MYCOBACTERIAL OTSA STRUCTURES UNVEIL SUBSTRATE PREFERENCE JRNL TITL 2 MECHANISM AND ALLOSTERIC REGULATION BY 2-OXOGLUTARATE AND JRNL TITL 3 2-PHOSPHOGLYCERATE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31772052 JRNL DOI 10.1128/MBIO.02272-19 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 74139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.6908 - 5.4587 1.00 2861 165 0.1550 0.1672 REMARK 3 2 5.4587 - 4.3331 1.00 2750 136 0.1313 0.1342 REMARK 3 3 4.3331 - 3.7855 1.00 2730 125 0.1325 0.1563 REMARK 3 4 3.7855 - 3.4394 1.00 2696 143 0.1526 0.1798 REMARK 3 5 3.4394 - 3.1929 1.00 2664 146 0.1644 0.1974 REMARK 3 6 3.1929 - 3.0047 1.00 2665 132 0.1789 0.2145 REMARK 3 7 3.0047 - 2.8542 1.00 2638 149 0.1787 0.1890 REMARK 3 8 2.8542 - 2.7300 0.99 2669 141 0.1819 0.1951 REMARK 3 9 2.7300 - 2.6249 0.99 2623 144 0.1747 0.2063 REMARK 3 10 2.6249 - 2.5343 0.99 2620 128 0.1696 0.1884 REMARK 3 11 2.5343 - 2.4550 0.99 2645 131 0.1716 0.2084 REMARK 3 12 2.4550 - 2.3849 0.98 2594 124 0.1710 0.2023 REMARK 3 13 2.3849 - 2.3221 0.99 2585 154 0.1669 0.1875 REMARK 3 14 2.3221 - 2.2654 0.97 2554 162 0.1653 0.1809 REMARK 3 15 2.2654 - 2.2139 0.95 2503 128 0.2000 0.1943 REMARK 3 16 2.2139 - 2.1668 0.99 2592 149 0.1664 0.2028 REMARK 3 17 2.1668 - 2.1235 0.99 2643 129 0.1612 0.1889 REMARK 3 18 2.1235 - 2.0834 0.98 2552 131 0.1740 0.1895 REMARK 3 19 2.0834 - 2.0462 0.98 2575 125 0.1955 0.2121 REMARK 3 20 2.0462 - 2.0115 0.98 2592 151 0.1756 0.1925 REMARK 3 21 2.0115 - 1.9790 0.98 2608 127 0.1876 0.2285 REMARK 3 22 1.9790 - 1.9486 0.98 2514 157 0.2015 0.2164 REMARK 3 23 1.9486 - 1.9199 0.94 2464 142 0.2262 0.2721 REMARK 3 24 1.9199 - 1.8929 0.94 2477 129 0.2806 0.2662 REMARK 3 25 1.8929 - 1.8673 0.97 2499 145 0.2167 0.2739 REMARK 3 26 1.8673 - 1.8430 0.96 2569 123 0.2139 0.2306 REMARK 3 27 1.8430 - 1.8200 0.97 2506 135 0.2201 0.2279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3764 REMARK 3 ANGLE : 1.009 5111 REMARK 3 CHIRALITY : 0.043 569 REMARK 3 PLANARITY : 0.005 669 REMARK 3 DIHEDRAL : 13.736 1395 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5829 -6.4742 45.2528 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.6220 REMARK 3 T33: 0.2755 T12: 0.1761 REMARK 3 T13: -0.0390 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.0517 L22: 1.2601 REMARK 3 L33: 3.2326 L12: 0.1133 REMARK 3 L13: 0.4817 L23: 0.0503 REMARK 3 S TENSOR REMARK 3 S11: -0.1782 S12: -0.0547 S13: 0.2596 REMARK 3 S21: -0.0998 S22: -0.0131 S23: 0.3041 REMARK 3 S31: -0.4244 S32: -1.2030 S33: 0.0811 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7637 -12.7765 27.2523 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.1574 REMARK 3 T33: 0.1756 T12: 0.0092 REMARK 3 T13: -0.0026 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.2907 L22: 0.8692 REMARK 3 L33: 2.2060 L12: 0.3021 REMARK 3 L13: -0.3036 L23: -0.1862 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.0538 S13: 0.0697 REMARK 3 S21: -0.1316 S22: -0.0170 S23: 0.0546 REMARK 3 S31: 0.0330 S32: -0.3346 S33: 0.0358 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 60.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 1UQU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 10 0.7M SODIUM POTASSIUM REMARK 280 TARTRATE 10% V/V ETHYLENE GLYCOL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.43000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.59500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.79750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.39250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 155.39250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.79750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.43000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.59500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.43000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 103.59500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.43000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 155.39250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.79750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.43000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.79750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 155.39250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.43000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.43000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.59500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 63.43000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -63.43000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.59500 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 126.86000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 63.43000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 63.43000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.59500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 845 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 GLU A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 THR A 478 REMARK 465 GLY A 479 REMARK 465 ASP A 480 REMARK 465 ALA A 481 REMARK 465 ASP A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 PRO A 485 REMARK 465 VAL A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 TRP A 33 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 33 CZ3 CH2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 52 CZ NH1 NH2 REMARK 470 ILE A 61 CD1 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 ARG A 80 NE CZ NH1 NH2 REMARK 470 ARG A 136 CD NE CZ NH1 NH2 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 LYS A 241 NZ REMARK 470 ARG A 261 CZ NH1 NH2 REMARK 470 ARG A 268 CZ NH1 NH2 REMARK 470 ARG A 467 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 -65.97 -107.08 REMARK 500 HIS A 103 50.31 -96.48 REMARK 500 VAL A 105 48.20 35.90 REMARK 500 ASP A 144 171.82 67.38 REMARK 500 ASN A 276 64.29 37.35 REMARK 500 HIS A 353 83.71 -152.15 REMARK 500 MET A 387 -68.78 -136.03 REMARK 500 ASN A 388 95.71 89.75 REMARK 500 LEU A 417 46.49 -105.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 DBREF1 5JIJ A 1 486 UNP A0A117IMA6_MYCTH DBREF2 5JIJ A A0A117IMA6 1 486 SEQADV 5JIJ SER A 0 UNP A0A117IMA EXPRESSION TAG SEQRES 1 A 487 SER MET ALA ASP ARG GLY ASP SER GLY ASP SER ASP PHE SEQRES 2 A 487 VAL VAL VAL ALA ASN ARG LEU PRO ILE ASP LEU GLU ARG SEQRES 3 A 487 ALA PRO ASP GLY THR THR SER TRP LYS ARG SER PRO GLY SEQRES 4 A 487 GLY LEU VAL THR ALA LEU GLU PRO LEU LEU ARG ARG ARG SEQRES 5 A 487 ARG GLY ALA TRP ILE GLY TRP PRO GLY ILE PRO ASP SER SEQRES 6 A 487 ASP GLU ASP PRO ILE VAL ASP GLY ASP LEU VAL LEU TYR SEQRES 7 A 487 PRO VAL ARG LEU SER ALA ASP ASP VAL ALA GLN TYR TYR SEQRES 8 A 487 GLU GLY PHE SER ASN ALA THR LEU TRP PRO LEU TYR HIS SEQRES 9 A 487 ASP VAL ILE VAL LYS PRO ILE TYR ASN ARG GLN TRP TRP SEQRES 10 A 487 GLU ARG TYR VAL GLU VAL ASN ARG ARG PHE ALA GLU ALA SEQRES 11 A 487 THR SER ARG ALA ALA ALA ARG GLY ALA THR VAL TRP VAL SEQRES 12 A 487 GLN ASP TYR GLN LEU GLN LEU VAL PRO LYS MET LEU ARG SEQRES 13 A 487 GLU LEU ARG PRO ASP LEU THR ILE GLY PHE PHE LEU HIS SEQRES 14 A 487 ILE PRO PHE PRO PRO VAL GLU LEU PHE MET GLN LEU PRO SEQRES 15 A 487 TRP ARG THR GLU ILE THR ASP GLY LEU LEU GLY ALA ASP SEQRES 16 A 487 LEU VAL GLY PHE HIS LEU PRO GLY GLY ALA GLN ASN PHE SEQRES 17 A 487 LEU PHE LEU ALA ARG ARG LEU VAL GLY ALA ASN THR SER SEQRES 18 A 487 ARG ALA SER VAL GLY VAL ARG SER LYS PHE GLY GLU VAL SEQRES 19 A 487 GLN ILE GLY SER ARG THR VAL LYS VAL GLY ALA PHE PRO SEQRES 20 A 487 ILE SER ILE ASP SER ALA ASP LEU ASP ARG GLN ALA ARG SEQRES 21 A 487 GLN ARG SER ILE ARG GLN ARG ALA ARG GLN ILE ARG ALA SEQRES 22 A 487 GLU LEU GLY ASN PRO ARG ARG ILE LEU LEU GLY VAL ASP SEQRES 23 A 487 ARG LEU ASP TYR THR LYS GLY ILE ASP VAL ARG LEU GLN SEQRES 24 A 487 ALA PHE ALA GLU LEU LEU ALA GLU GLY ARG VAL ASN ARG SEQRES 25 A 487 GLU ASP THR VAL PHE VAL GLN LEU ALA THR PRO SER ARG SEQRES 26 A 487 GLU ARG VAL GLU ALA TYR ARG LEU LEU ARG ASP ASP ILE SEQRES 27 A 487 GLU ARG GLN VAL GLY HIS ILE ASN GLY GLU TYR GLY GLU SEQRES 28 A 487 VAL GLY HIS PRO VAL VAL HIS TYR LEU HIS ARG PRO VAL SEQRES 29 A 487 PRO ARG GLU GLU LEU ILE ALA PHE PHE VAL ALA ALA ASP SEQRES 30 A 487 VAL MET LEU VAL THR PRO LEU ARG ASP GLY MET ASN LEU SEQRES 31 A 487 VAL ALA LYS GLU TYR VAL ALA CYS ARG SER ASP LEU GLY SEQRES 32 A 487 GLY ALA LEU VAL LEU SER GLU PHE THR GLY ALA ALA ALA SEQRES 33 A 487 GLU LEU GLY GLN ALA TYR LEU VAL ASN PRO HIS ASN LEU SEQRES 34 A 487 ASP HIS VAL LYS ASP THR MET VAL ALA ALA LEU ASN GLN SEQRES 35 A 487 THR PRO GLU GLU GLY ARG ARG ARG MET ARG ALA LEU ARG SEQRES 36 A 487 ARG GLN VAL LEU ALA HIS ASP VAL ASP LEU TRP ALA ARG SEQRES 37 A 487 SER PHE LEU ASP ALA LEU ALA SER THR ARG THR GLY ASP SEQRES 38 A 487 ALA ASP ALA VAL PRO VAL HET NHE A 501 13 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NHE C8 H17 N O3 S FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *298(H2 O) HELIX 1 AA1 GLY A 38 LEU A 44 1 7 HELIX 2 AA2 LEU A 44 ARG A 49 1 6 HELIX 3 AA3 SER A 82 TYR A 90 1 9 HELIX 4 AA4 GLY A 92 THR A 97 1 6 HELIX 5 AA5 THR A 97 HIS A 103 1 7 HELIX 6 AA6 ASN A 112 ALA A 133 1 22 HELIX 7 AA7 TYR A 145 GLN A 148 5 4 HELIX 8 AA8 LEU A 149 ARG A 158 1 10 HELIX 9 AA9 PRO A 173 MET A 178 1 6 HELIX 10 AB1 TRP A 182 GLY A 192 1 11 HELIX 11 AB2 LEU A 200 VAL A 215 1 16 HELIX 12 AB3 ASP A 250 ALA A 258 1 9 HELIX 13 AB4 GLN A 260 LEU A 274 1 15 HELIX 14 AB5 GLY A 292 GLU A 306 1 15 HELIX 15 AB6 VAL A 327 GLY A 349 1 23 HELIX 16 AB7 PRO A 364 ALA A 375 1 12 HELIX 17 AB8 ASN A 388 ARG A 398 1 11 HELIX 18 AB9 THR A 411 GLU A 416 5 6 HELIX 19 AC1 ASN A 427 GLN A 441 1 15 HELIX 20 AC2 THR A 442 HIS A 460 1 19 HELIX 21 AC3 ASP A 461 SER A 475 1 15 SHEET 1 AA110 ILE A 69 ASP A 71 0 SHEET 2 AA110 LEU A 74 PRO A 78 -1 O LEU A 76 N ILE A 69 SHEET 3 AA110 GLY A 53 TRP A 58 1 N TRP A 55 O TYR A 77 SHEET 4 AA110 SER A 10 ARG A 18 1 N VAL A 14 O ILE A 56 SHEET 5 AA110 ALA A 134 GLN A 143 1 O ALA A 135 N SER A 10 SHEET 6 AA110 THR A 162 PHE A 166 1 O GLY A 164 N VAL A 140 SHEET 7 AA110 LEU A 195 PHE A 198 1 O GLY A 197 N PHE A 165 SHEET 8 AA110 ARG A 238 ALA A 244 1 O LYS A 241 N VAL A 196 SHEET 9 AA110 GLY A 231 ILE A 235 -1 N VAL A 233 O VAL A 240 SHEET 10 AA110 ASN A 218 THR A 219 -1 N ASN A 218 O GLN A 234 SHEET 1 AA2 2 ILE A 21 ASP A 22 0 SHEET 2 AA2 2 LYS A 34 ARG A 35 -1 O LYS A 34 N ASP A 22 SHEET 1 AA3 6 VAL A 356 HIS A 360 0 SHEET 2 AA3 6 THR A 314 THR A 321 1 N GLN A 318 O HIS A 357 SHEET 3 AA3 6 ARG A 279 ARG A 286 1 N GLY A 283 O LEU A 319 SHEET 4 AA3 6 VAL A 377 VAL A 380 1 O LEU A 379 N LEU A 282 SHEET 5 AA3 6 LEU A 405 SER A 408 1 O VAL A 406 N MET A 378 SHEET 6 AA3 6 TYR A 421 VAL A 423 1 O TYR A 421 N LEU A 405 SITE 1 AC1 10 GLU A 175 MET A 178 ARG A 183 ARG A 213 SITE 2 AC1 10 LEU A 214 ARG A 384 GLU A 409 HOH A 619 SITE 3 AC1 10 HOH A 668 HOH A 670 SITE 1 AC2 7 ARG A 213 LEU A 214 GLU A 444 ARG A 447 SITE 2 AC2 7 ARG A 448 ARG A 451 HOH A 754 SITE 1 AC3 4 LEU A 401 ARG A 451 ARG A 454 ARG A 455 SITE 1 AC4 5 TYR A 111 HIS A 426 LEU A 428 ASP A 429 SITE 2 AC4 5 HOH A 830 SITE 1 AC5 4 GLN A 298 ARG A 339 GLN A 340 HIS A 343 SITE 1 AC6 5 ALA A 258 ARG A 264 CYS A 397 SER A 399 SITE 2 AC6 5 ASP A 400 SITE 1 AC7 3 ARG A 286 THR A 321 LEU A 368 SITE 1 AC8 5 GLY A 418 ALA A 420 LEU A 422 ARG A 449 SITE 2 AC8 5 HOH A 727 SITE 1 AC9 7 LEU A 287 PRO A 322 SER A 323 GLU A 325 SITE 2 AC9 7 HIS A 360 HOH A 631 HOH A 731 SITE 1 AD1 3 GLU A 367 PHE A 371 HOH A 748 CRYST1 126.860 126.860 207.190 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004826 0.00000