HEADER TRANSFERASE 22-APR-16 5JIO TITLE STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE TREHALOSE-6-PHOSPHATE TITLE 2 SYNTHASE TERNARY COMPLEX WITH ADP AND GLUCOSE-6-PHOSPHATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 ATCC: 19527; SOURCE 5 GENE: RMCT_1906; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OTSA TREHALOSE-6-PHOSPHATE SYNTHASE TREHALOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,N.VERMA,M.BLASZCZYK,T.L.BLUNDELL REVDAT 5 10-JAN-24 5JIO 1 HETSYN REVDAT 4 29-JUL-20 5JIO 1 COMPND REMARK HETNAM SITE REVDAT 3 22-JAN-20 5JIO 1 JRNL ATOM REVDAT 2 13-SEP-17 5JIO 1 REMARK REVDAT 1 10-MAY-17 5JIO 0 JRNL AUTH V.MENDES,M.ACEBRON-GARCIA-DE-EULATE,N.VERMA,M.BLASZCZYK, JRNL AUTH 2 M.V.B.DIAS,T.L.BLUNDELL JRNL TITL MYCOBACTERIAL OTSA STRUCTURES UNVEIL SUBSTRATE PREFERENCE JRNL TITL 2 MECHANISM AND ALLOSTERIC REGULATION BY 2-OXOGLUTARATE AND JRNL TITL 3 2-PHOSPHOGLYCERATE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31772052 JRNL DOI 10.1128/MBIO.02272-19 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 91.3719 - 4.6429 1.00 2976 153 0.1510 0.1738 REMARK 3 2 4.6429 - 3.6851 1.00 2802 146 0.1251 0.1466 REMARK 3 3 3.6851 - 3.2193 1.00 2764 133 0.1478 0.1564 REMARK 3 4 3.2193 - 2.9249 1.00 2749 117 0.1544 0.1726 REMARK 3 5 2.9249 - 2.7153 1.00 2719 140 0.1575 0.1745 REMARK 3 6 2.7153 - 2.5552 1.00 2681 161 0.1555 0.1822 REMARK 3 7 2.5552 - 2.4272 1.00 2695 138 0.1561 0.2038 REMARK 3 8 2.4272 - 2.3215 1.00 2677 142 0.1545 0.2072 REMARK 3 9 2.3215 - 2.2321 1.00 2701 121 0.1463 0.1726 REMARK 3 10 2.2321 - 2.1551 1.00 2673 132 0.1471 0.1594 REMARK 3 11 2.1551 - 2.0877 1.00 2693 137 0.1492 0.1804 REMARK 3 12 2.0877 - 2.0280 1.00 2613 151 0.1528 0.2044 REMARK 3 13 2.0280 - 1.9746 1.00 2695 137 0.1556 0.2134 REMARK 3 14 1.9746 - 1.9265 1.00 2644 150 0.1710 0.1922 REMARK 3 15 1.9265 - 1.8827 1.00 2633 141 0.1734 0.2004 REMARK 3 16 1.8827 - 1.8426 1.00 2671 132 0.1736 0.2474 REMARK 3 17 1.8426 - 1.8057 1.00 2648 137 0.1741 0.1891 REMARK 3 18 1.8057 - 1.7717 1.00 2666 118 0.1907 0.2193 REMARK 3 19 1.7717 - 1.7400 1.00 2641 155 0.2085 0.2219 REMARK 3 20 1.7400 - 1.7105 1.00 2622 152 0.2331 0.2818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3834 REMARK 3 ANGLE : 1.092 5221 REMARK 3 CHIRALITY : 0.048 581 REMARK 3 PLANARITY : 0.005 679 REMARK 3 DIHEDRAL : 12.723 1403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2224 103.9118 177.8176 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.1521 REMARK 3 T33: 0.2251 T12: -0.0521 REMARK 3 T13: 0.0359 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.4944 L22: 2.3293 REMARK 3 L33: 1.9804 L12: 0.1544 REMARK 3 L13: -0.1480 L23: 0.4065 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.0990 S13: -0.1696 REMARK 3 S21: -0.1488 S22: -0.0430 S23: 0.3183 REMARK 3 S31: 0.3841 S32: -0.2826 S33: 0.0659 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6104 116.3691 162.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.1091 REMARK 3 T33: 0.1427 T12: 0.0197 REMARK 3 T13: 0.0345 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.7713 L22: 1.3778 REMARK 3 L33: 1.1908 L12: -0.0050 REMARK 3 L13: -0.1627 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.0781 S13: -0.0911 REMARK 3 S21: -0.1971 S22: -0.0057 S23: -0.0253 REMARK 3 S31: 0.2079 S32: 0.0432 S33: 0.0336 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 91.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.10 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: 5JIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M AMMONIUM PHOSPHATE DIBASIC 0.1M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.91067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.95533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.91067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.95533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.91067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.95533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 105.91067 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.95533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.67850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 273.72552 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 158.03550 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 91.24184 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 370.68733 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -105.35700 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 182.48368 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 370.68733 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 845 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 THR A 478 REMARK 465 GLY A 479 REMARK 465 ASP A 480 REMARK 465 ALA A 481 REMARK 465 ASP A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 PRO A 485 REMARK 465 VAL A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 7 OG REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 221 NE CZ NH1 NH2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 268 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 758 O HOH A 882 11657 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 103 50.40 -97.10 REMARK 500 VAL A 105 49.60 33.49 REMARK 500 ASP A 144 177.00 82.72 REMARK 500 HIS A 353 82.39 -152.02 REMARK 500 HIS A 360 63.46 -108.72 REMARK 500 MET A 387 -62.06 -139.96 REMARK 500 ASN A 388 102.88 82.20 REMARK 500 ARG A 398 58.81 -93.86 REMARK 500 LEU A 417 53.53 -103.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 928 DISTANCE = 6.14 ANGSTROMS DBREF1 5JIO A 1 486 UNP A0A117IMA6_MYCTH DBREF2 5JIO A A0A117IMA6 1 486 SEQADV 5JIO SER A 0 UNP A0A117IMA EXPRESSION TAG SEQRES 1 A 487 SER MET ALA ASP ARG GLY ASP SER GLY ASP SER ASP PHE SEQRES 2 A 487 VAL VAL VAL ALA ASN ARG LEU PRO ILE ASP LEU GLU ARG SEQRES 3 A 487 ALA PRO ASP GLY THR THR SER TRP LYS ARG SER PRO GLY SEQRES 4 A 487 GLY LEU VAL THR ALA LEU GLU PRO LEU LEU ARG ARG ARG SEQRES 5 A 487 ARG GLY ALA TRP ILE GLY TRP PRO GLY ILE PRO ASP SER SEQRES 6 A 487 ASP GLU ASP PRO ILE VAL ASP GLY ASP LEU VAL LEU TYR SEQRES 7 A 487 PRO VAL ARG LEU SER ALA ASP ASP VAL ALA GLN TYR TYR SEQRES 8 A 487 GLU GLY PHE SER ASN ALA THR LEU TRP PRO LEU TYR HIS SEQRES 9 A 487 ASP VAL ILE VAL LYS PRO ILE TYR ASN ARG GLN TRP TRP SEQRES 10 A 487 GLU ARG TYR VAL GLU VAL ASN ARG ARG PHE ALA GLU ALA SEQRES 11 A 487 THR SER ARG ALA ALA ALA ARG GLY ALA THR VAL TRP VAL SEQRES 12 A 487 GLN ASP TYR GLN LEU GLN LEU VAL PRO LYS MET LEU ARG SEQRES 13 A 487 GLU LEU ARG PRO ASP LEU THR ILE GLY PHE PHE LEU HIS SEQRES 14 A 487 ILE PRO PHE PRO PRO VAL GLU LEU PHE MET GLN LEU PRO SEQRES 15 A 487 TRP ARG THR GLU ILE THR ASP GLY LEU LEU GLY ALA ASP SEQRES 16 A 487 LEU VAL GLY PHE HIS LEU PRO GLY GLY ALA GLN ASN PHE SEQRES 17 A 487 LEU PHE LEU ALA ARG ARG LEU VAL GLY ALA ASN THR SER SEQRES 18 A 487 ARG ALA SER VAL GLY VAL ARG SER LYS PHE GLY GLU VAL SEQRES 19 A 487 GLN ILE GLY SER ARG THR VAL LYS VAL GLY ALA PHE PRO SEQRES 20 A 487 ILE SER ILE ASP SER ALA ASP LEU ASP ARG GLN ALA ARG SEQRES 21 A 487 GLN ARG SER ILE ARG GLN ARG ALA ARG GLN ILE ARG ALA SEQRES 22 A 487 GLU LEU GLY ASN PRO ARG ARG ILE LEU LEU GLY VAL ASP SEQRES 23 A 487 ARG LEU ASP TYR THR LYS GLY ILE ASP VAL ARG LEU GLN SEQRES 24 A 487 ALA PHE ALA GLU LEU LEU ALA GLU GLY ARG VAL ASN ARG SEQRES 25 A 487 GLU ASP THR VAL PHE VAL GLN LEU ALA THR PRO SER ARG SEQRES 26 A 487 GLU ARG VAL GLU ALA TYR ARG LEU LEU ARG ASP ASP ILE SEQRES 27 A 487 GLU ARG GLN VAL GLY HIS ILE ASN GLY GLU TYR GLY GLU SEQRES 28 A 487 VAL GLY HIS PRO VAL VAL HIS TYR LEU HIS ARG PRO VAL SEQRES 29 A 487 PRO ARG GLU GLU LEU ILE ALA PHE PHE VAL ALA ALA ASP SEQRES 30 A 487 VAL MET LEU VAL THR PRO LEU ARG ASP GLY MET ASN LEU SEQRES 31 A 487 VAL ALA LYS GLU TYR VAL ALA CYS ARG SER ASP LEU GLY SEQRES 32 A 487 GLY ALA LEU VAL LEU SER GLU PHE THR GLY ALA ALA ALA SEQRES 33 A 487 GLU LEU GLY GLN ALA TYR LEU VAL ASN PRO HIS ASN LEU SEQRES 34 A 487 ASP HIS VAL LYS ASP THR MET VAL ALA ALA LEU ASN GLN SEQRES 35 A 487 THR PRO GLU GLU GLY ARG ARG ARG MET ARG ALA LEU ARG SEQRES 36 A 487 ARG GLN VAL LEU ALA HIS ASP VAL ASP LEU TRP ALA ARG SEQRES 37 A 487 SER PHE LEU ASP ALA LEU ALA SER THR ARG THR GLY ASP SEQRES 38 A 487 ALA ASP ALA VAL PRO VAL HET ADP A 501 27 HET G6P A 502 16 HET EDO A 503 4 HET EDO A 504 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM G6P 6-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN G6P ALPHA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-ALPHA-D- HETSYN 2 G6P GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 G6P GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 G6P C6 H13 O9 P FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *328(H2 O) HELIX 1 AA1 GLY A 38 ARG A 51 1 14 HELIX 2 AA2 SER A 82 TYR A 89 1 8 HELIX 3 AA3 GLY A 92 THR A 97 1 6 HELIX 4 AA4 THR A 97 HIS A 103 1 7 HELIX 5 AA5 ASN A 112 ALA A 133 1 22 HELIX 6 AA6 TYR A 145 GLN A 148 5 4 HELIX 7 AA7 LEU A 149 ARG A 158 1 10 HELIX 8 AA8 PRO A 173 MET A 178 1 6 HELIX 9 AA9 TRP A 182 LEU A 191 1 10 HELIX 10 AB1 LEU A 200 LEU A 214 1 15 HELIX 11 AB2 ASP A 250 ALA A 258 1 9 HELIX 12 AB3 GLN A 260 LEU A 274 1 15 HELIX 13 AB4 GLY A 292 GLU A 306 1 15 HELIX 14 AB5 VAL A 327 GLY A 349 1 23 HELIX 15 AB6 PRO A 364 ALA A 375 1 12 HELIX 16 AB7 ASN A 388 ARG A 398 1 11 HELIX 17 AB8 THR A 411 GLU A 416 5 6 HELIX 18 AB9 ASN A 427 ASN A 440 1 14 HELIX 19 AC1 THR A 442 HIS A 460 1 19 HELIX 20 AC2 ASP A 461 SER A 475 1 15 SHEET 1 AA1 9 ILE A 69 ASP A 71 0 SHEET 2 AA1 9 LEU A 74 PRO A 78 -1 O LEU A 76 N ILE A 69 SHEET 3 AA1 9 ALA A 54 TRP A 58 1 N TRP A 55 O TYR A 77 SHEET 4 AA1 9 SER A 10 ARG A 18 1 N VAL A 14 O ALA A 54 SHEET 5 AA1 9 ALA A 134 GLN A 143 1 O GLN A 143 N VAL A 15 SHEET 6 AA1 9 THR A 162 PHE A 166 1 O GLY A 164 N VAL A 142 SHEET 7 AA1 9 LEU A 195 PHE A 198 1 O GLY A 197 N PHE A 165 SHEET 8 AA1 9 ARG A 238 ALA A 244 1 O LYS A 241 N VAL A 196 SHEET 9 AA1 9 GLY A 231 ILE A 235 -1 N VAL A 233 O VAL A 240 SHEET 1 AA2 2 ILE A 21 GLU A 24 0 SHEET 2 AA2 2 SER A 32 ARG A 35 -1 O LYS A 34 N ASP A 22 SHEET 1 AA3 6 VAL A 356 HIS A 360 0 SHEET 2 AA3 6 THR A 314 THR A 321 1 N GLN A 318 O HIS A 357 SHEET 3 AA3 6 ARG A 279 ARG A 286 1 N GLY A 283 O LEU A 319 SHEET 4 AA3 6 VAL A 377 VAL A 380 1 O LEU A 379 N LEU A 282 SHEET 5 AA3 6 LEU A 405 SER A 408 1 O VAL A 406 N MET A 378 SHEET 6 AA3 6 TYR A 421 VAL A 423 1 O TYR A 421 N LEU A 405 CRYST1 105.357 105.357 158.866 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009492 0.005480 0.000000 0.00000 SCALE2 0.000000 0.010960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006295 0.00000