HEADER HYDROLASE 22-APR-16 5JIP TITLE CRYSTAL STRUCTURE OF THE CLOSTRIDIUM PERFRINGENS SPORE CORTEX LYTIC TITLE 2 ENZYME SLEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORTICAL-LYTIC ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: SLEM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBADCLIC-SLEM KEYWDS SPORE, CORTEX, PEPTIDOGLYCAN-LYSIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.Y.CHIRGADZE,G.CHRISTIE,F.I.USTOK,B.AL-RIYAMI,K.STOTT REVDAT 4 10-JAN-24 5JIP 1 LINK REVDAT 3 02-NOV-16 5JIP 1 JRNL REVDAT 2 17-AUG-16 5JIP 1 JRNL REVDAT 1 10-AUG-16 5JIP 0 JRNL AUTH B.AL-RIYAMI,F.I.USTOK,K.STOTT,D.Y.CHIRGADZE,G.CHRISTIE JRNL TITL THE CRYSTAL STRUCTURE OF CLOSTRIDIUM PERFRINGENS SLEM, A JRNL TITL 2 MURAMIDASE INVOLVED IN CORTICAL HYDROLYSIS DURING SPORE JRNL TITL 3 GERMINATION. JRNL REF PROTEINS V. 84 1681 2016 JRNL REFN ESSN 1097-0134 JRNL PMID 27488615 JRNL DOI 10.1002/PROT.25112 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2313: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 66248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3970 - 5.1891 1.00 2723 135 0.1729 0.1714 REMARK 3 2 5.1891 - 4.1198 1.00 2667 134 0.1199 0.1425 REMARK 3 3 4.1198 - 3.5994 1.00 2635 132 0.1245 0.1264 REMARK 3 4 3.5994 - 3.2704 1.00 2667 137 0.1294 0.1689 REMARK 3 5 3.2704 - 3.0361 1.00 2613 153 0.1369 0.1683 REMARK 3 6 3.0361 - 2.8571 1.00 2643 137 0.1327 0.1373 REMARK 3 7 2.8571 - 2.7141 1.00 2659 119 0.1361 0.1849 REMARK 3 8 2.7141 - 2.5959 1.00 2621 157 0.1331 0.1630 REMARK 3 9 2.5959 - 2.4960 1.00 2611 138 0.1327 0.1745 REMARK 3 10 2.4960 - 2.4099 1.00 2621 145 0.1426 0.1705 REMARK 3 11 2.4099 - 2.3345 1.00 2632 168 0.1409 0.1726 REMARK 3 12 2.3345 - 2.2678 1.00 2633 139 0.1435 0.1778 REMARK 3 13 2.2678 - 2.2081 1.00 2587 139 0.1512 0.1807 REMARK 3 14 2.2081 - 2.1542 1.00 2658 133 0.1478 0.1862 REMARK 3 15 2.1542 - 2.1053 1.00 2603 126 0.1520 0.1924 REMARK 3 16 2.1053 - 2.0605 1.00 2655 168 0.1649 0.2057 REMARK 3 17 2.0605 - 2.0193 1.00 2569 134 0.1691 0.2371 REMARK 3 18 2.0193 - 1.9812 1.00 2602 160 0.1715 0.2196 REMARK 3 19 1.9812 - 1.9458 0.99 2566 150 0.1840 0.2342 REMARK 3 20 1.9458 - 1.9128 0.99 2631 139 0.1820 0.2105 REMARK 3 21 1.9128 - 1.8819 0.99 2571 128 0.2016 0.2614 REMARK 3 22 1.8819 - 1.8530 0.98 2579 146 0.2296 0.2884 REMARK 3 23 1.8530 - 1.8257 0.98 2606 120 0.2486 0.3159 REMARK 3 24 1.8257 - 1.8000 0.98 2532 127 0.2747 0.3017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5235 REMARK 3 ANGLE : 1.065 7100 REMARK 3 CHIRALITY : 0.058 742 REMARK 3 PLANARITY : 0.007 920 REMARK 3 DIHEDRAL : 13.704 3107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HELIOS MX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES BUFFER, PH 6.0, 0.25 M REMARK 280 MAGNESIUM CHLORIDE, 16% (W/V) PEG6000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.92600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 321 REMARK 465 GLY A 322 REMARK 465 GLU A 323 REMARK 465 PHE A 324 REMARK 465 LEU A 325 REMARK 465 GLY A 326 REMARK 465 GLU A 327 REMARK 465 ASN A 328 REMARK 465 LEU A 329 REMARK 465 TYR A 330 REMARK 465 PHE A 331 REMARK 465 GLN A 332 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 PHE B 5 REMARK 465 ALA B 6 REMARK 465 ASN B 321 REMARK 465 GLY B 322 REMARK 465 GLU B 323 REMARK 465 PHE B 324 REMARK 465 LEU B 325 REMARK 465 GLY B 326 REMARK 465 GLU B 327 REMARK 465 ASN B 328 REMARK 465 LEU B 329 REMARK 465 TYR B 330 REMARK 465 PHE B 331 REMARK 465 GLN B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS B 80 O HOH B 502 1.51 REMARK 500 HH11 ARG A 188 O HOH A 506 1.52 REMARK 500 O HOH B 769 O HOH B 915 1.54 REMARK 500 O HOH B 794 O HOH B 1027 1.60 REMARK 500 O HOH A 532 O HOH A 808 1.70 REMARK 500 O HOH B 835 O HOH B 882 1.70 REMARK 500 O HOH A 735 O HOH B 858 1.78 REMARK 500 O HOH A 559 O HOH A 565 1.80 REMARK 500 O HOH A 878 O HOH A 908 1.82 REMARK 500 O HOH B 960 O HOH B 1008 1.82 REMARK 500 O HOH A 838 O HOH A 1008 1.84 REMARK 500 O HOH B 939 O HOH B 996 1.86 REMARK 500 O HOH A 846 O HOH A 942 1.87 REMARK 500 O HOH A 614 O HOH A 651 1.87 REMARK 500 O HOH A 872 O HOH A 945 1.88 REMARK 500 O HOH B 501 O HOH B 508 1.88 REMARK 500 O HOH B 831 O HOH B 936 1.89 REMARK 500 O HOH A 873 O HOH A 994 1.91 REMARK 500 O HOH B 951 O HOH B 1053 1.93 REMARK 500 O HOH B 850 O HOH B 902 1.95 REMARK 500 O HOH B 831 O HOH B 989 1.95 REMARK 500 O HOH B 956 O HOH B 1057 1.96 REMARK 500 O HOH B 615 O HOH B 949 1.96 REMARK 500 O HOH B 807 O HOH B 945 1.97 REMARK 500 O HOH B 508 O HOH B 953 1.97 REMARK 500 O HOH A 536 O HOH A 871 1.99 REMARK 500 O HOH B 527 O HOH B 954 2.00 REMARK 500 O HOH B 992 O HOH B 1006 2.00 REMARK 500 O HOH B 696 O HOH B 815 2.00 REMARK 500 OD1 ASN A 245 O HOH A 501 2.01 REMARK 500 O HOH B 972 O HOH B 981 2.02 REMARK 500 O HOH A 649 O HOH A 788 2.03 REMARK 500 O ASN B 320 O HOH B 501 2.04 REMARK 500 O HOH B 1074 O HOH B 1084 2.04 REMARK 500 O HOH A 558 O HOH A 776 2.05 REMARK 500 O HOH A 598 O HOH B 879 2.05 REMARK 500 O HOH A 551 O HOH A 886 2.06 REMARK 500 O HOH A 691 O HOH A 861 2.06 REMARK 500 O HOH A 884 O HOH A 1021 2.06 REMARK 500 NZ LYS B 80 O HOH B 502 2.08 REMARK 500 O HOH A 663 O HOH A 920 2.08 REMARK 500 O HOH A 890 O HOH A 935 2.09 REMARK 500 O HOH B 927 O HOH B 1060 2.09 REMARK 500 O HOH B 821 O HOH B 850 2.10 REMARK 500 O HOH B 632 O HOH B 939 2.10 REMARK 500 O HOH B 502 O HOH B 873 2.11 REMARK 500 O HOH B 524 O HOH B 608 2.11 REMARK 500 O HOH B 672 O HOH B 731 2.12 REMARK 500 O HOH B 642 O HOH B 740 2.12 REMARK 500 O HOH B 502 O HOH B 719 2.12 REMARK 500 REMARK 500 THIS ENTRY HAS 74 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 892 O HOH B 932 2645 1.44 REMARK 500 O HOH A 520 O HOH B 827 2745 1.84 REMARK 500 O HOH A 777 O HOH B 827 2745 1.86 REMARK 500 O HOH A 803 O HOH B 897 2746 1.93 REMARK 500 O HOH A 746 O HOH B 945 2745 2.14 REMARK 500 O HOH A 571 O HOH A 900 2746 2.18 REMARK 500 O HOH A 835 O HOH B 534 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 158 46.55 -102.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1040 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1041 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1045 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1046 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1047 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A1048 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A1049 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH A1051 DISTANCE = 11.42 ANGSTROMS REMARK 525 HOH B1071 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1072 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1073 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1074 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B1075 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1076 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B1077 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B1078 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B1079 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B1080 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B1081 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B1082 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B1083 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B1084 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B1085 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH B1086 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH B1087 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH B1088 DISTANCE = 9.08 ANGSTROMS REMARK 525 HOH B1089 DISTANCE = 9.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 227 O REMARK 620 2 MET A 230 O 85.6 REMARK 620 3 ASP A 258 OD2 83.8 169.0 REMARK 620 4 ASP A 304 OD2 174.1 90.1 100.6 REMARK 620 5 HOH A 552 O 88.0 85.7 90.7 95.8 REMARK 620 6 HOH A 604 O 95.4 91.9 92.3 80.6 175.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 227 O REMARK 620 2 MET B 230 O 86.3 REMARK 620 3 ASP B 258 OD2 85.0 171.3 REMARK 620 4 ASP B 304 OD2 177.2 93.0 95.6 REMARK 620 5 HOH B 582 O 86.5 87.3 92.2 96.2 REMARK 620 6 HOH B 705 O 93.9 90.1 90.4 83.3 177.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 DBREF 5JIP A 7 326 UNP O06496 O06496_CLOPF 2 321 DBREF 5JIP B 7 326 UNP O06496 O06496_CLOPF 2 321 SEQADV 5JIP MET A 1 UNP O06496 INITIATING METHIONINE SEQADV 5JIP GLY A 2 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLY A 3 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLY A 4 UNP O06496 EXPRESSION TAG SEQADV 5JIP PHE A 5 UNP O06496 EXPRESSION TAG SEQADV 5JIP ALA A 6 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLU A 327 UNP O06496 EXPRESSION TAG SEQADV 5JIP ASN A 328 UNP O06496 EXPRESSION TAG SEQADV 5JIP LEU A 329 UNP O06496 EXPRESSION TAG SEQADV 5JIP TYR A 330 UNP O06496 EXPRESSION TAG SEQADV 5JIP PHE A 331 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLN A 332 UNP O06496 EXPRESSION TAG SEQADV 5JIP MET B 1 UNP O06496 INITIATING METHIONINE SEQADV 5JIP GLY B 2 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLY B 3 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLY B 4 UNP O06496 EXPRESSION TAG SEQADV 5JIP PHE B 5 UNP O06496 EXPRESSION TAG SEQADV 5JIP ALA B 6 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLU B 327 UNP O06496 EXPRESSION TAG SEQADV 5JIP ASN B 328 UNP O06496 EXPRESSION TAG SEQADV 5JIP LEU B 329 UNP O06496 EXPRESSION TAG SEQADV 5JIP TYR B 330 UNP O06496 EXPRESSION TAG SEQADV 5JIP PHE B 331 UNP O06496 EXPRESSION TAG SEQADV 5JIP GLN B 332 UNP O06496 EXPRESSION TAG SEQRES 1 A 332 MET GLY GLY GLY PHE ALA GLN ASP LYS ASN PRO LEU SER SEQRES 2 A 332 THR PHE GLY PRO ASP LEU ASN GLU PHE SER ARG ASP VAL SEQRES 3 A 332 ASN PHE LEU THR LEU ALA LYS ASN SER ASP PHE ILE TYR SEQRES 4 A 332 LEU ARG ALA SER GLY SER GLY THR GLY LYS LEU ARG ILE SEQRES 5 A 332 ASP ASN LYS PHE LEU GLU PHE ALA LYS GLU CYS ARG ARG SEQRES 6 A 332 LEU GLY ILE PRO CYS GLY ALA TYR HIS PHE ALA LYS PRO SEQRES 7 A 332 SER LYS ASP LEU ASP SER ALA VAL ILE GLN ALA ASP GLN SEQRES 8 A 332 PHE ILE ASP VAL LEU GLN GLN GLY PHE GLY ASP GLY ASP SEQRES 9 A 332 TYR GLY ASP LEU PHE PRO VAL LEU ASP VAL GLU THR PRO SEQRES 10 A 332 THR ASP LYS SER LEU THR THR THR GLU LEU VAL ASN TRP SEQRES 11 A 332 ILE ASP ARG PHE ARG ASP ARG PHE GLU GLU LYS THR ARG SEQRES 12 A 332 ARG ARG LEU MET LEU TYR THR GLY LEU PHE PHE ILE GLY SEQRES 13 A 332 LEU TYR ASP ASP PHE LYS VAL PRO GLY LYS GLY TYR PRO SEQRES 14 A 332 LEU SER ASP MET PRO LEU TRP ILE ALA MET TYR THR ARG SEQRES 15 A 332 ILE PRO SER ASN PRO ARG ILE PRO PRO ASN VAL GLY GLY SEQRES 16 A 332 TRP LYS ARG TRP THR MET TRP GLN PHE THR ASP GLU GLY SEQRES 17 A 332 LYS LEU ASP GLY VAL GLY SER PRO VAL ASP LEU ASN TRP SEQRES 18 A 332 GLY PRO ASN SER ILE ASP SER LEU MET PRO PRO SER ALA SEQRES 19 A 332 VAL THR GLY LEU ASN ALA TYR ILE SER GLY ASN LYS ILE SEQRES 20 A 332 PHE VAL ASN TRP THR ALA ASN LYS GLU ASP ASP LEU ASN SEQRES 21 A 332 GLY TYR ASN VAL PHE VAL ASN ASP ASN TYR ALA GLY THR SEQRES 22 A 332 LEU PRO ARG LYS ALA THR LYS ILE VAL ILE ASP LYS SER SEQRES 23 A 332 ARG PHE TYR LEU PRO LYS GLY LYS PRO ILE LYS ILE SER SEQRES 24 A 332 ILE GLU ALA PHE ASP ILE THR GLY ASP PHE SER LYS GLU SEQRES 25 A 332 ARG THR GLU TYR ILE LEU ASP ASN ASN GLY GLU PHE LEU SEQRES 26 A 332 GLY GLU ASN LEU TYR PHE GLN SEQRES 1 B 332 MET GLY GLY GLY PHE ALA GLN ASP LYS ASN PRO LEU SER SEQRES 2 B 332 THR PHE GLY PRO ASP LEU ASN GLU PHE SER ARG ASP VAL SEQRES 3 B 332 ASN PHE LEU THR LEU ALA LYS ASN SER ASP PHE ILE TYR SEQRES 4 B 332 LEU ARG ALA SER GLY SER GLY THR GLY LYS LEU ARG ILE SEQRES 5 B 332 ASP ASN LYS PHE LEU GLU PHE ALA LYS GLU CYS ARG ARG SEQRES 6 B 332 LEU GLY ILE PRO CYS GLY ALA TYR HIS PHE ALA LYS PRO SEQRES 7 B 332 SER LYS ASP LEU ASP SER ALA VAL ILE GLN ALA ASP GLN SEQRES 8 B 332 PHE ILE ASP VAL LEU GLN GLN GLY PHE GLY ASP GLY ASP SEQRES 9 B 332 TYR GLY ASP LEU PHE PRO VAL LEU ASP VAL GLU THR PRO SEQRES 10 B 332 THR ASP LYS SER LEU THR THR THR GLU LEU VAL ASN TRP SEQRES 11 B 332 ILE ASP ARG PHE ARG ASP ARG PHE GLU GLU LYS THR ARG SEQRES 12 B 332 ARG ARG LEU MET LEU TYR THR GLY LEU PHE PHE ILE GLY SEQRES 13 B 332 LEU TYR ASP ASP PHE LYS VAL PRO GLY LYS GLY TYR PRO SEQRES 14 B 332 LEU SER ASP MET PRO LEU TRP ILE ALA MET TYR THR ARG SEQRES 15 B 332 ILE PRO SER ASN PRO ARG ILE PRO PRO ASN VAL GLY GLY SEQRES 16 B 332 TRP LYS ARG TRP THR MET TRP GLN PHE THR ASP GLU GLY SEQRES 17 B 332 LYS LEU ASP GLY VAL GLY SER PRO VAL ASP LEU ASN TRP SEQRES 18 B 332 GLY PRO ASN SER ILE ASP SER LEU MET PRO PRO SER ALA SEQRES 19 B 332 VAL THR GLY LEU ASN ALA TYR ILE SER GLY ASN LYS ILE SEQRES 20 B 332 PHE VAL ASN TRP THR ALA ASN LYS GLU ASP ASP LEU ASN SEQRES 21 B 332 GLY TYR ASN VAL PHE VAL ASN ASP ASN TYR ALA GLY THR SEQRES 22 B 332 LEU PRO ARG LYS ALA THR LYS ILE VAL ILE ASP LYS SER SEQRES 23 B 332 ARG PHE TYR LEU PRO LYS GLY LYS PRO ILE LYS ILE SER SEQRES 24 B 332 ILE GLU ALA PHE ASP ILE THR GLY ASP PHE SER LYS GLU SEQRES 25 B 332 ARG THR GLU TYR ILE LEU ASP ASN ASN GLY GLU PHE LEU SEQRES 26 B 332 GLY GLU ASN LEU TYR PHE GLN HET MES A 401 25 HET MES A 402 25 HET MG A 403 1 HET MES B 401 25 HET MES B 402 25 HET MG B 403 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 MES 4(C6 H13 N O4 S) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *1139(H2 O) HELIX 1 AA1 ASN A 27 SER A 35 1 9 HELIX 2 AA2 LYS A 55 GLY A 67 1 13 HELIX 3 AA3 LEU A 82 GLY A 101 1 20 HELIX 4 AA4 THR A 123 ARG A 143 1 21 HELIX 5 AA5 LEU A 152 TYR A 158 1 7 HELIX 6 AA6 ASP A 159 LYS A 162 5 4 HELIX 7 AA7 SER A 225 MET A 230 5 6 HELIX 8 AA8 SER A 286 PHE A 288 5 3 HELIX 9 AA9 ASN B 27 SER B 35 1 9 HELIX 10 AB1 LYS B 55 GLY B 67 1 13 HELIX 11 AB2 LEU B 82 GLY B 101 1 20 HELIX 12 AB3 THR B 123 ARG B 143 1 21 HELIX 13 AB4 LEU B 152 TYR B 158 1 7 HELIX 14 AB5 ASP B 159 LYS B 162 5 4 HELIX 15 AB6 SER B 225 MET B 230 5 6 HELIX 16 AB7 SER B 286 PHE B 288 5 3 SHEET 1 AA110 ARG A 51 ILE A 52 0 SHEET 2 AA110 ILE A 38 GLY A 44 -1 N GLY A 44 O ARG A 51 SHEET 3 AA110 CYS A 70 PHE A 75 1 O TYR A 73 N ALA A 42 SHEET 4 AA110 VAL A 111 ASP A 113 1 O ASP A 113 N HIS A 74 SHEET 5 AA110 MET A 147 GLY A 151 1 O TYR A 149 N LEU A 112 SHEET 6 AA110 LEU A 175 ALA A 178 1 O TRP A 176 N LEU A 148 SHEET 7 AA110 MET A 201 GLY A 208 1 O GLN A 203 N ILE A 177 SHEET 8 AA110 VAL A 217 TRP A 221 -1 O TRP A 221 N TRP A 202 SHEET 9 AA110 PHE A 15 LEU A 19 -1 N GLY A 16 O ASN A 220 SHEET 10 AA110 ILE A 38 GLY A 44 1 O TYR A 39 N LEU A 19 SHEET 1 AA2 3 ASN A 239 SER A 243 0 SHEET 2 AA2 3 LYS A 246 ASN A 250 -1 O PHE A 248 N TYR A 241 SHEET 3 AA2 3 LYS A 280 ASP A 284 -1 O ILE A 283 N ILE A 247 SHEET 1 AA3 4 ASN A 269 PRO A 275 0 SHEET 2 AA3 4 LEU A 259 VAL A 266 -1 N VAL A 264 O ALA A 271 SHEET 3 AA3 4 ILE A 296 ASP A 304 -1 O SER A 299 N PHE A 265 SHEET 4 AA3 4 THR A 314 LEU A 318 -1 O LEU A 318 N ILE A 296 SHEET 1 AA410 ARG B 51 ILE B 52 0 SHEET 2 AA410 ILE B 38 GLY B 44 -1 N GLY B 44 O ARG B 51 SHEET 3 AA410 CYS B 70 PHE B 75 1 O TYR B 73 N ALA B 42 SHEET 4 AA410 VAL B 111 ASP B 113 1 O ASP B 113 N HIS B 74 SHEET 5 AA410 MET B 147 GLY B 151 1 O TYR B 149 N LEU B 112 SHEET 6 AA410 LEU B 175 ALA B 178 1 O TRP B 176 N LEU B 148 SHEET 7 AA410 MET B 201 GLY B 208 1 O GLN B 203 N ILE B 177 SHEET 8 AA410 VAL B 217 TRP B 221 -1 O VAL B 217 N GLY B 208 SHEET 9 AA410 PHE B 15 LEU B 19 -1 N GLY B 16 O ASN B 220 SHEET 10 AA410 ILE B 38 GLY B 44 1 O TYR B 39 N LEU B 19 SHEET 1 AA5 3 ASN B 239 SER B 243 0 SHEET 2 AA5 3 LYS B 246 ASN B 250 -1 O PHE B 248 N TYR B 241 SHEET 3 AA5 3 LYS B 280 ASP B 284 -1 O ILE B 283 N ILE B 247 SHEET 1 AA6 4 ASN B 269 PRO B 275 0 SHEET 2 AA6 4 LEU B 259 VAL B 266 -1 N VAL B 264 O ALA B 271 SHEET 3 AA6 4 ILE B 296 ASP B 304 -1 O SER B 299 N PHE B 265 SHEET 4 AA6 4 THR B 314 LEU B 318 -1 O LEU B 318 N ILE B 296 LINK O ASP A 227 MG MG A 403 1555 1555 2.16 LINK O MET A 230 MG MG A 403 1555 1555 2.04 LINK OD2 ASP A 258 MG MG A 403 1555 1555 2.04 LINK OD2 ASP A 304 MG MG A 403 1555 1555 2.08 LINK MG MG A 403 O HOH A 552 1555 1555 2.13 LINK MG MG A 403 O HOH A 604 1555 1555 2.10 LINK O ASP B 227 MG MG B 403 1555 1555 2.12 LINK O MET B 230 MG MG B 403 1555 1555 1.99 LINK OD2 ASP B 258 MG MG B 403 1555 1555 2.13 LINK OD2 ASP B 304 MG MG B 403 1555 1555 2.11 LINK MG MG B 403 O HOH B 582 1555 1555 2.16 LINK MG MG B 403 O HOH B 705 1555 1555 2.17 CISPEP 1 THR A 116 PRO A 117 0 -4.06 CISPEP 2 THR B 116 PRO B 117 0 -3.54 SITE 1 AC1 10 ASP A 18 ASN A 20 ARG A 41 TYR A 73 SITE 2 AC1 10 PHE A 75 ASP A 113 GLU A 115 TYR A 149 SITE 3 AC1 10 GLN A 203 ASP A 218 SITE 1 AC2 10 GLU A 115 TYR A 149 LEU A 152 PHE A 153 SITE 2 AC2 10 ALA A 178 MET A 179 TYR A 180 ILE A 183 SITE 3 AC2 10 ASN A 186 HOH A 541 SITE 1 AC3 6 ASP A 227 MET A 230 ASP A 258 ASP A 304 SITE 2 AC3 6 HOH A 552 HOH A 604 SITE 1 AC4 11 ASP B 18 ASN B 20 ARG B 41 TYR B 73 SITE 2 AC4 11 PHE B 75 ASP B 113 GLU B 115 TYR B 149 SITE 3 AC4 11 GLN B 203 ASP B 218 HOH B 819 SITE 1 AC5 8 TYR B 149 LEU B 152 PHE B 153 ALA B 178 SITE 2 AC5 8 MET B 179 TYR B 180 ASN B 186 HOH B 519 SITE 1 AC6 6 ASP B 227 MET B 230 ASP B 258 ASP B 304 SITE 2 AC6 6 HOH B 582 HOH B 705 CRYST1 50.599 85.852 87.205 90.00 105.51 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019763 0.000000 0.005483 0.00000 SCALE2 0.000000 0.011648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011900 0.00000