HEADER TRANSFERASE 22-APR-16 5JIZ TITLE PKG II'S CARBOXYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN TITLE 2 A COMPLEX WITH 8-PCPT-CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CGK2,CGMP-DEPENDENT PROTEIN KINASE II,CGKII; COMPND 5 EC: 2.7.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG2, PRKGR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIC GMP-DEPENDENT PROTEIN KINASE TYPE II, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CAMPBELL,C.W.KIM REVDAT 2 27-SEP-23 5JIZ 1 LINK REVDAT 1 03-MAY-17 5JIZ 0 JRNL AUTH J.C.CAMPBELL,C.W.KIM JRNL TITL PKG II'S CARBOXYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN JRNL TITL 2 (CNB-B) IN A COMPLEX WITH 8-PCPT-CGMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 22476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8630 - 3.6147 0.99 1599 156 0.1819 0.1652 REMARK 3 2 3.6147 - 2.8693 1.00 1527 149 0.1674 0.1846 REMARK 3 3 2.8693 - 2.5067 1.00 1502 146 0.1694 0.2083 REMARK 3 4 2.5067 - 2.2775 0.99 1497 148 0.1639 0.1993 REMARK 3 5 2.2775 - 2.1143 0.99 1468 143 0.1656 0.1735 REMARK 3 6 2.1143 - 1.9896 0.99 1482 144 0.1618 0.1826 REMARK 3 7 1.9896 - 1.8900 0.99 1468 144 0.1775 0.2061 REMARK 3 8 1.8900 - 1.8077 0.99 1470 143 0.1825 0.2121 REMARK 3 9 1.8077 - 1.7381 0.99 1447 141 0.1895 0.2059 REMARK 3 10 1.7381 - 1.6782 0.99 1443 141 0.1998 0.2593 REMARK 3 11 1.6782 - 1.6257 0.98 1435 141 0.2133 0.2240 REMARK 3 12 1.6257 - 1.5792 0.98 1458 142 0.2125 0.2932 REMARK 3 13 1.5792 - 1.5376 0.97 1422 140 0.2238 0.2459 REMARK 3 14 1.5376 - 1.5001 0.87 1258 122 0.2465 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1246 REMARK 3 ANGLE : 1.489 1690 REMARK 3 CHIRALITY : 0.072 191 REMARK 3 PLANARITY : 0.007 212 REMARK 3 DIHEDRAL : 15.872 444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0261 -14.2749 19.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.1803 REMARK 3 T33: 0.2595 T12: -0.0377 REMARK 3 T13: -0.0507 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 4.5283 L22: 7.5180 REMARK 3 L33: 5.6126 L12: 0.9756 REMARK 3 L13: -0.1410 L23: -2.3872 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: -0.2936 S13: -0.6365 REMARK 3 S21: 0.2233 S22: -0.3564 S23: -1.0905 REMARK 3 S31: -0.0506 S32: 0.3559 S33: 0.1516 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3535 -8.0594 18.7358 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.0514 REMARK 3 T33: 0.0771 T12: 0.0125 REMARK 3 T13: 0.0055 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.8601 L22: 2.6774 REMARK 3 L33: 5.7763 L12: 1.9857 REMARK 3 L13: 3.1814 L23: 1.3430 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.0255 S13: 0.1803 REMARK 3 S21: 0.0567 S22: -0.0644 S23: -0.0433 REMARK 3 S31: -0.1650 S32: 0.2246 S33: 0.0428 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2970 -8.1026 4.9941 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: 0.1048 REMARK 3 T33: 0.0804 T12: -0.0304 REMARK 3 T13: 0.0182 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.6489 L22: 4.0525 REMARK 3 L33: 0.9292 L12: -1.6084 REMARK 3 L13: 1.8487 L23: -0.6829 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.0739 S13: -0.0866 REMARK 3 S21: -0.0501 S22: -0.0417 S23: 0.3352 REMARK 3 S31: 0.1106 S32: -0.3250 S33: 0.0499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7122 -2.6704 -0.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.0690 REMARK 3 T33: 0.0652 T12: -0.0317 REMARK 3 T13: -0.0003 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.1078 L22: 4.1292 REMARK 3 L33: 4.4651 L12: -1.7990 REMARK 3 L13: 1.3190 L23: -1.2969 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: 0.4585 S13: 0.0595 REMARK 3 S21: -0.4575 S22: -0.1220 S23: 0.1142 REMARK 3 S31: 0.0062 S32: 0.1192 S33: -0.0034 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6483 -4.7807 7.6004 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0509 REMARK 3 T33: 0.0410 T12: -0.0081 REMARK 3 T13: 0.0111 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.0547 L22: 1.6100 REMARK 3 L33: 1.6550 L12: -0.1368 REMARK 3 L13: 0.5773 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.1087 S13: 0.0191 REMARK 3 S21: -0.0382 S22: -0.0027 S23: -0.0562 REMARK 3 S31: 0.0527 S32: 0.0849 S33: 0.0179 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1682 -0.9183 22.3321 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1161 REMARK 3 T33: 0.1426 T12: 0.0059 REMARK 3 T13: 0.0039 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 8.4498 L22: 7.9795 REMARK 3 L33: 4.1041 L12: 6.8136 REMARK 3 L13: 2.3559 L23: 0.9014 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.5457 S13: 0.6488 REMARK 3 S21: 0.2054 S22: -0.2377 S23: 0.2223 REMARK 3 S31: -0.2018 S32: 0.0421 S33: 0.1201 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0162 9.5935 7.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.0932 REMARK 3 T33: 0.0761 T12: 0.0088 REMARK 3 T13: 0.0188 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 8.9623 L22: 4.5131 REMARK 3 L33: 8.8334 L12: -1.0341 REMARK 3 L13: 8.3729 L23: -1.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.0463 S13: 0.1594 REMARK 3 S21: -0.3023 S22: -0.1297 S23: -0.0768 REMARK 3 S31: -0.2649 S32: 0.0454 S33: 0.1527 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.849 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5BV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM CACL2, 100 MM NAOAC, 30% MPD, PH REMARK 280 4.6, AT 4OC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 268 OG REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 GLN A 276 CD OE1 NE2 REMARK 470 LYS A 288 CD CE NZ REMARK 470 LYS A 309 NZ REMARK 470 ARG A 315 NH1 NH2 REMARK 470 LYS A 330 CE NZ REMARK 470 GLU A 338 OE1 OE2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 GLN A 342 CG CD OE1 NE2 REMARK 470 LYS A 351 NZ REMARK 470 GLU A 373 CD OE1 OE2 REMARK 470 ARG A 384 CD NE CZ NH1 NH2 REMARK 470 GLU A 385 CD OE1 OE2 REMARK 470 GLN A 389 CD OE1 NE2 REMARK 470 GLU A 395 OE1 OE2 REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 LEU A 397 CD1 CD2 REMARK 470 LYS A 399 CE NZ REMARK 470 LYS A 414 CE NZ REMARK 470 LYS A 418 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 339 O HOH A 601 1.18 REMARK 500 O HOH A 777 O HOH A 780 1.84 REMARK 500 O HOH A 727 O HOH A 745 1.86 REMARK 500 O HOH A 620 O HOH A 772 1.86 REMARK 500 O HOH A 772 O HOH A 779 1.87 REMARK 500 O HOH A 650 O HOH A 734 1.89 REMARK 500 O HOH A 713 O HOH A 755 1.96 REMARK 500 N GLY A 339 O HOH A 601 2.01 REMARK 500 O HOH A 607 O HOH A 616 2.04 REMARK 500 O SER A 268 O HOH A 602 2.06 REMARK 500 O HOH A 715 O HOH A 765 2.14 REMARK 500 CZ ARG A 315 O HOH A 719 2.14 REMARK 500 O HOH A 682 O HOH A 770 2.14 REMARK 500 O HOH A 674 O HOH A 755 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 750 4445 1.90 REMARK 500 O HOH A 704 O HOH A 726 3455 2.09 REMARK 500 O HOH A 606 O HOH A 727 3455 2.11 REMARK 500 O HOH A 717 O HOH A 751 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 340 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 390 -83.82 -123.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6FW A 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 364 OD2 REMARK 620 2 HOH A 638 O 24.8 REMARK 620 3 HOH A 644 O 23.9 3.1 REMARK 620 4 HOH A 669 O 21.6 3.8 5.2 REMARK 620 5 HOH A 730 O 19.0 6.4 7.1 2.7 REMARK 620 6 HOH A 753 O 18.8 6.3 5.2 4.5 4.0 REMARK 620 7 HOH A 768 O 20.7 4.4 3.4 3.4 4.2 1.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6FW A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6FW A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JIX RELATED DB: PDB DBREF 5JIZ A 269 418 UNP Q13237 KGP2_HUMAN 269 418 SEQADV 5JIZ GLY A 267 UNP Q13237 EXPRESSION TAG SEQADV 5JIZ SER A 268 UNP Q13237 EXPRESSION TAG SEQRES 1 A 152 GLY SER THR ALA GLN ALA ARG ASP GLU GLN TYR ARG ASN SEQRES 2 A 152 PHE LEU ARG SER VAL SER LEU LEU LYS ASN LEU PRO GLU SEQRES 3 A 152 ASP LYS LEU THR LYS ILE ILE ASP CYS LEU GLU VAL GLU SEQRES 4 A 152 TYR TYR ASP LYS GLY ASP TYR ILE ILE ARG GLU GLY GLU SEQRES 5 A 152 GLU GLY SER THR PHE PHE ILE LEU ALA LYS GLY LYS VAL SEQRES 6 A 152 LYS VAL THR GLN SER THR GLU GLY HIS ASP GLN PRO GLN SEQRES 7 A 152 LEU ILE LYS THR LEU GLN LYS GLY GLU TYR PHE GLY GLU SEQRES 8 A 152 LYS ALA LEU ILE SER ASP ASP VAL ARG SER ALA ASN ILE SEQRES 9 A 152 ILE ALA GLU GLU ASN ASP VAL ALA CYS LEU VAL ILE ASP SEQRES 10 A 152 ARG GLU THR PHE ASN GLN THR VAL GLY THR PHE GLU GLU SEQRES 11 A 152 LEU GLN LYS TYR LEU GLU GLY TYR VAL ALA ASN LEU ASN SEQRES 12 A 152 ARG ASP ASP GLU LYS ARG HIS ALA LYS HET 6FW A 501 46 HET 6FW A 502 9 HET MPD A 503 22 HET MPD A 504 22 HET CA A 505 1 HETNAM 6FW 2-AMINO-8-[(4-CHLOROPHENYL)SULFANYL]-9-[(2S,4AR,6R,7R, HETNAM 2 6FW 7AS)-2,7-DIHYDROXY-2-OXOTETRAHYDRO-2H,4H-2LAMBDA~5~- HETNAM 3 6FW FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-6-YL]-3,9-DIHYDRO- HETNAM 4 6FW 6H-PURIN-6-ONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CA CALCIUM ION FORMUL 2 6FW 2(C16 H15 CL N5 O7 P S) FORMUL 4 MPD 2(C6 H14 O2) FORMUL 6 CA CA 2+ FORMUL 7 HOH *180(H2 O) HELIX 1 AA1 THR A 269 SER A 283 1 15 HELIX 2 AA2 VAL A 284 LYS A 288 5 5 HELIX 3 AA3 PRO A 291 LEU A 302 1 12 HELIX 4 AA4 GLY A 356 ASP A 363 1 8 HELIX 5 AA5 ASP A 383 THR A 390 1 8 HELIX 6 AA6 VAL A 391 THR A 393 5 3 HELIX 7 AA7 PHE A 394 ARG A 415 1 22 SHEET 1 AA1 4 GLU A 303 TYR A 307 0 SHEET 2 AA1 4 VAL A 377 ILE A 382 -1 O VAL A 381 N GLU A 303 SHEET 3 AA1 4 PHE A 323 LYS A 328 -1 N ILE A 325 O LEU A 380 SHEET 4 AA1 4 TYR A 354 PHE A 355 -1 O PHE A 355 N PHE A 324 SHEET 1 AA2 4 TYR A 312 ILE A 314 0 SHEET 2 AA2 4 ASN A 369 ALA A 372 -1 O ILE A 370 N ILE A 313 SHEET 3 AA2 4 LYS A 330 GLN A 335 -1 N THR A 334 O ASN A 369 SHEET 4 AA2 4 GLN A 344 GLN A 350 -1 O GLN A 344 N GLN A 335 LINK OD2 ASP A 364 CA CA A 505 1555 3455 2.33 LINK CA CA A 505 O HOH A 638 1555 3445 2.37 LINK CA CA A 505 O HOH A 644 1555 1555 2.39 LINK CA CA A 505 O HOH A 669 1555 1555 2.49 LINK CA CA A 505 O HOH A 730 1555 3445 2.32 LINK CA CA A 505 O HOH A 753 1555 1555 2.45 LINK CA CA A 505 O HOH A 768 1555 3445 2.35 SITE 1 AC1 18 GLN A 335 TYR A 354 PHE A 355 GLY A 356 SITE 2 AC1 18 GLU A 357 LYS A 358 ALA A 359 ARG A 366 SITE 3 AC1 18 SER A 367 ALA A 368 ILE A 370 TYR A 404 SITE 4 AC1 18 LEU A 408 ASP A 412 ARG A 415 HOH A 624 SITE 5 AC1 18 HOH A 651 HOH A 700 SITE 1 AC2 5 GLU A 303 VAL A 381 ILE A 382 LYS A 399 SITE 2 AC2 5 GLU A 402 SITE 1 AC3 2 TYR A 277 ALA A 327 SITE 1 AC4 8 GLU A 305 TYR A 306 ASN A 388 GLY A 392 SITE 2 AC4 8 GLN A 398 HOH A 625 HOH A 655 HOH A 658 SITE 1 AC5 7 ASP A 364 HOH A 638 HOH A 644 HOH A 669 SITE 2 AC5 7 HOH A 730 HOH A 753 HOH A 768 CRYST1 42.200 50.210 65.500 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015267 0.00000