HEADER TRANSPORT PROTEIN 22-APR-16 5JJ5 TITLE CRYSTAL STRUCTURE OF IRON UPTAKE ABC TRANSPORTER SUBSTRATE-BINDING TITLE 2 PROTEIN PIAA FROM STREPTOCOCCUS PNEUMONIAE CANADA MDR_19A BOUND TO TITLE 3 HYDROXYMATE SIDEROPHORE FERRIOXAMINE E AND IRON(III) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN-IRON TRANSPORT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 35-341; COMPND 5 SYNONYM: IRON ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN,IRON COMPOUND COMPND 6 ABC UPTAKE TRANSPORTER SUBSTRATE-BINDING PROTEIN PIAA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: YHFQ, YHFQ_1, YHFQ_2, YHFQ_3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC 298255319 KEYWDS CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, NIAID, KEYWDS 2 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, ALPHA AND KEYWDS 3 BETA PROTEIN, PERIPLASMIC BINDING PROTEIN TYPE III FOLD, IRON KEYWDS 4 TRANSPORT, IRON UPTAKE, HYDROXYMATE SIDEROPHORE, FERRIOXAMINE E, KEYWDS 5 PUTATIVE MEMBRANE-ANCHORED LIPOPROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,M.KURDRITSKA,V.YIM,A.SAVCHENKO,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 27-SEP-23 5JJ5 1 REMARK REVDAT 2 25-MAY-16 5JJ5 1 SOURCE REVDAT 1 04-MAY-16 5JJ5 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF IRON UPTAKE ABC TRANSPORTER JRNL TITL 2 SUBSTRATE-BINDING PROTEIN PIAA FROM STREPTOCOCCUS PNEUMONIAE JRNL TITL 3 CANADA MDR_19A BOUND TO HYDROXYMATE SIDEROPHORE FERRIOXAMINE JRNL TITL 4 E AND IRON(III) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.6 REMARK 3 NUMBER OF REFLECTIONS : 36164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2419 - 6.0027 0.99 4088 206 0.1496 0.2046 REMARK 3 2 6.0027 - 4.7712 0.99 4056 218 0.1292 0.1566 REMARK 3 3 4.7712 - 4.1701 0.96 3967 207 0.1009 0.1514 REMARK 3 4 4.1701 - 3.7897 0.95 3910 201 0.1058 0.1772 REMARK 3 5 3.7897 - 3.5185 0.92 3746 209 0.1261 0.1892 REMARK 3 6 3.5185 - 3.3114 0.87 3591 192 0.1430 0.1765 REMARK 3 7 3.3114 - 3.1458 0.79 3238 172 0.1536 0.2021 REMARK 3 8 3.1458 - 3.0090 0.67 2748 130 0.1724 0.2665 REMARK 3 9 3.0090 - 2.8932 0.57 2361 122 0.1871 0.2408 REMARK 3 10 2.8932 - 2.7935 0.52 2154 118 0.1947 0.2296 REMARK 3 11 2.7935 - 2.7062 0.51 2091 110 0.2092 0.2516 REMARK 3 12 2.7062 - 2.6289 0.50 2035 107 0.2085 0.2582 REMARK 3 13 2.6289 - 2.5597 0.46 1900 100 0.2108 0.2419 REMARK 3 14 2.5597 - 2.4973 0.44 1778 96 0.2067 0.2161 REMARK 3 15 2.4973 - 2.4406 0.41 1704 87 0.1971 0.2740 REMARK 3 16 2.4406 - 2.3886 0.37 1531 81 0.2024 0.2398 REMARK 3 17 2.3886 - 2.3409 0.31 1283 68 0.1776 0.2164 REMARK 3 18 2.3409 - 2.2967 0.22 890 44 0.1861 0.2549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4983 REMARK 3 ANGLE : 0.616 6625 REMARK 3 CHIRALITY : 0.025 753 REMARK 3 PLANARITY : 0.003 849 REMARK 3 DIHEDRAL : 11.357 1841 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 34:56 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9685 3.7790 3.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.5775 T22: 0.3049 REMARK 3 T33: 0.2087 T12: 0.0824 REMARK 3 T13: -0.0455 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 7.0187 L22: 7.9377 REMARK 3 L33: 9.3327 L12: 6.2714 REMARK 3 L13: 7.2913 L23: 5.7551 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: -0.5970 S13: 0.6845 REMARK 3 S21: 0.5269 S22: -0.3008 S23: 0.1343 REMARK 3 S31: -0.6492 S32: -0.4129 S33: 0.3335 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 57:159 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0436 -7.3175 -10.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.1359 REMARK 3 T33: 0.1273 T12: -0.0062 REMARK 3 T13: -0.0669 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.6265 L22: 1.5123 REMARK 3 L33: 4.2108 L12: -0.5553 REMARK 3 L13: 0.3976 L23: 0.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.1943 S13: -0.0441 REMARK 3 S21: 0.4131 S22: 0.0896 S23: -0.1717 REMARK 3 S31: 0.1587 S32: 0.2304 S33: -0.0186 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 160:205 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2889 10.9078 -19.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.0867 REMARK 3 T33: 0.2513 T12: 0.0105 REMARK 3 T13: 0.0088 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.8520 L22: 3.0462 REMARK 3 L33: 7.0817 L12: 0.3781 REMARK 3 L13: -0.3411 L23: -0.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: -0.0233 S13: 0.2499 REMARK 3 S21: 0.4563 S22: 0.0440 S23: -0.1258 REMARK 3 S31: -0.7053 S32: 0.1684 S33: -0.1059 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESI 206:341 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4652 -2.3228 -33.9792 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1821 REMARK 3 T33: 0.1507 T12: 0.0197 REMARK 3 T13: -0.0015 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.4853 L22: 3.4045 REMARK 3 L33: 3.4582 L12: -0.3002 REMARK 3 L13: 1.2939 L23: 0.6257 REMARK 3 S TENSOR REMARK 3 S11: 0.1948 S12: 0.2207 S13: -0.1600 REMARK 3 S21: -0.1161 S22: -0.2259 S23: 0.2588 REMARK 3 S31: 0.1012 S32: -0.2737 S33: 0.0095 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESI 38:56 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8187 -49.0339 -22.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.0878 REMARK 3 T33: 0.2222 T12: -0.0121 REMARK 3 T13: 0.0683 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 7.1813 L22: 6.8982 REMARK 3 L33: 7.8619 L12: 1.0606 REMARK 3 L13: 2.8840 L23: -0.3886 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.2500 S13: -0.5760 REMARK 3 S21: 0.0897 S22: -0.0413 S23: 0.4485 REMARK 3 S31: 0.5983 S32: -0.4109 S33: -0.0248 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESI 57:159 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0796 -31.9331 -23.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1214 REMARK 3 T33: 0.0920 T12: -0.0357 REMARK 3 T13: 0.0258 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.1671 L22: 2.8570 REMARK 3 L33: 2.6546 L12: -0.0748 REMARK 3 L13: 0.1768 L23: -0.5444 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: -0.1878 S13: 0.0301 REMARK 3 S21: 0.3565 S22: -0.0705 S23: 0.0822 REMARK 3 S31: -0.0738 S32: -0.0513 S33: 0.0068 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESI 160:205 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7086 -36.3925 -43.3122 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1934 REMARK 3 T33: 0.1637 T12: 0.0717 REMARK 3 T13: -0.0101 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 4.2937 L22: 5.6938 REMARK 3 L33: 7.9868 L12: 2.9060 REMARK 3 L13: -3.2750 L23: -3.4289 REMARK 3 S TENSOR REMARK 3 S11: -0.2421 S12: 0.5103 S13: -0.2205 REMARK 3 S21: -0.5187 S22: 0.0588 S23: -0.0933 REMARK 3 S31: 0.1663 S32: -0.1191 S33: 0.0850 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESI 206:341 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5490 -22.5513 -37.0078 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.1803 REMARK 3 T33: 0.1506 T12: -0.0079 REMARK 3 T13: 0.0371 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 5.1902 L22: 2.8177 REMARK 3 L33: 2.2499 L12: 1.3524 REMARK 3 L13: -0.4836 L23: 0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.1601 S12: -0.1377 S13: 0.0379 REMARK 3 S21: -0.0718 S22: -0.1328 S23: -0.3725 REMARK 3 S31: -0.1302 S32: 0.2531 S33: -0.0093 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4H59 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JEFFAMINE ED-2001 PH 7.0 30%, HEPES REMARK 280 0.1M PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.92200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 34 REMARK 465 HIS B 35 REMARK 465 ALA B 36 REMARK 465 PRO B 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -140.31 54.51 REMARK 500 ALA A 131 32.90 -147.90 REMARK 500 SER A 155 -94.11 -125.91 REMARK 500 TRP A 158 19.75 58.76 REMARK 500 GLN A 159 65.56 -111.81 REMARK 500 PRO A 306 109.30 -52.89 REMARK 500 ALA B 62 -142.11 56.27 REMARK 500 ALA B 131 35.97 -149.86 REMARK 500 SER B 155 -78.92 -132.34 REMARK 500 GLN B 159 68.67 -106.85 REMARK 500 ASP B 278 -164.43 -129.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 767 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 773 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 774 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 775 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 776 DISTANCE = 7.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6L0 A 402 OAE REMARK 620 2 6L0 A 402 NBO 54.3 REMARK 620 3 6L0 A 402 OAH 81.2 28.7 REMARK 620 4 6L0 A 402 OAG 102.5 107.9 94.1 REMARK 620 5 6L0 A 402 OAD 91.6 145.8 164.3 73.8 REMARK 620 6 6L0 A 402 OAF 89.9 92.8 104.3 159.2 89.5 REMARK 620 7 6L0 A 402 OAI 157.9 114.4 93.0 99.2 98.6 70.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6L0 B 402 OAG REMARK 620 2 6L0 B 402 OAI 97.8 REMARK 620 3 6L0 B 402 OAH 92.2 96.8 REMARK 620 4 6L0 B 402 OAD 72.0 100.8 157.7 REMARK 620 5 6L0 B 402 OAF 162.9 79.3 104.9 91.8 REMARK 620 6 6L0 B 402 OAE 98.3 161.2 72.9 93.4 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6L0 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6L0 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91955 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4H59 RELATED DB: PDB DBREF1 5JJ5 A 35 341 UNP A0A062WLD9_STREE DBREF2 5JJ5 A A0A062WLD9 35 341 DBREF1 5JJ5 B 35 341 UNP A0A062WLD9_STREE DBREF2 5JJ5 B A0A062WLD9 35 341 SEQADV 5JJ5 GLY A 34 UNP A0A062WLD EXPRESSION TAG SEQADV 5JJ5 GLY B 34 UNP A0A062WLD EXPRESSION TAG SEQRES 1 A 308 GLY HIS ALA PRO ASP LYS ILE VAL LEU ASP HIS ALA PHE SEQRES 2 A 308 GLY GLN THR ILE LEU ASP LYS LYS PRO GLU ARG VAL ALA SEQRES 3 A 308 THR ILE ALA TRP GLY ASN HIS ASP VAL ALA LEU ALA LEU SEQRES 4 A 308 GLY ILE VAL PRO VAL GLY PHE SER LYS ALA ASN TYR GLY SEQRES 5 A 308 VAL SER ALA ASP LYS GLY VAL LEU PRO TRP THR GLU GLU SEQRES 6 A 308 LYS ILE LYS GLU LEU ASN GLY LYS ALA ASN LEU PHE ASP SEQRES 7 A 308 ASP LEU ASP GLY LEU ASN PHE GLU ALA ILE SER ASN SER SEQRES 8 A 308 LYS PRO ASP VAL ILE LEU ALA GLY TYR SER GLY ILE THR SEQRES 9 A 308 LYS GLU ASP TYR ASP THR LEU SER LYS ILE ALA PRO VAL SEQRES 10 A 308 ALA ALA TYR LYS SER LYS PRO TRP GLN THR LEU TRP ARG SEQRES 11 A 308 ASP MET ILE LYS ILE ASP SER LYS ALA LEU GLY MET GLU SEQRES 12 A 308 LYS GLU GLY ASP GLU LEU ILE LYS ASN THR GLU ALA ARG SEQRES 13 A 308 ILE SER LYS GLU LEU GLU LYS HIS PRO GLU ILE LYS GLY SEQRES 14 A 308 LYS ILE LYS GLY LYS LYS VAL LEU PHE THR MET ILE ASN SEQRES 15 A 308 ALA ALA ASP THR SER LYS PHE TRP ILE TYR THR SER LYS SEQRES 16 A 308 ASP PRO ARG ALA ASN TYR LEU THR ASP LEU GLY LEU VAL SEQRES 17 A 308 PHE PRO GLU SER LEU LYS GLU PHE GLU SER GLU ASP SER SEQRES 18 A 308 PHE ALA LYS GLU ILE SER ALA GLU GLU ALA ASN LYS ILE SEQRES 19 A 308 ASN ASP ALA ASP VAL ILE ILE THR TYR GLY ASP ASP LYS SEQRES 20 A 308 THR LEU GLU ALA LEU GLN LYS ASP PRO LEU LEU GLY LYS SEQRES 21 A 308 ILE ASN ALA ILE LYS ASN GLY ALA VAL ALA VAL ILE PRO SEQRES 22 A 308 ASP ASN THR PRO LEU ALA ALA SER CYS THR PRO THR PRO SEQRES 23 A 308 LEU SER ILE ASN TYR THR ILE GLU GLU TYR LEU ASN LEU SEQRES 24 A 308 LEU GLY ASN ALA CYS LYS ASN ALA LYS SEQRES 1 B 308 GLY HIS ALA PRO ASP LYS ILE VAL LEU ASP HIS ALA PHE SEQRES 2 B 308 GLY GLN THR ILE LEU ASP LYS LYS PRO GLU ARG VAL ALA SEQRES 3 B 308 THR ILE ALA TRP GLY ASN HIS ASP VAL ALA LEU ALA LEU SEQRES 4 B 308 GLY ILE VAL PRO VAL GLY PHE SER LYS ALA ASN TYR GLY SEQRES 5 B 308 VAL SER ALA ASP LYS GLY VAL LEU PRO TRP THR GLU GLU SEQRES 6 B 308 LYS ILE LYS GLU LEU ASN GLY LYS ALA ASN LEU PHE ASP SEQRES 7 B 308 ASP LEU ASP GLY LEU ASN PHE GLU ALA ILE SER ASN SER SEQRES 8 B 308 LYS PRO ASP VAL ILE LEU ALA GLY TYR SER GLY ILE THR SEQRES 9 B 308 LYS GLU ASP TYR ASP THR LEU SER LYS ILE ALA PRO VAL SEQRES 10 B 308 ALA ALA TYR LYS SER LYS PRO TRP GLN THR LEU TRP ARG SEQRES 11 B 308 ASP MET ILE LYS ILE ASP SER LYS ALA LEU GLY MET GLU SEQRES 12 B 308 LYS GLU GLY ASP GLU LEU ILE LYS ASN THR GLU ALA ARG SEQRES 13 B 308 ILE SER LYS GLU LEU GLU LYS HIS PRO GLU ILE LYS GLY SEQRES 14 B 308 LYS ILE LYS GLY LYS LYS VAL LEU PHE THR MET ILE ASN SEQRES 15 B 308 ALA ALA ASP THR SER LYS PHE TRP ILE TYR THR SER LYS SEQRES 16 B 308 ASP PRO ARG ALA ASN TYR LEU THR ASP LEU GLY LEU VAL SEQRES 17 B 308 PHE PRO GLU SER LEU LYS GLU PHE GLU SER GLU ASP SER SEQRES 18 B 308 PHE ALA LYS GLU ILE SER ALA GLU GLU ALA ASN LYS ILE SEQRES 19 B 308 ASN ASP ALA ASP VAL ILE ILE THR TYR GLY ASP ASP LYS SEQRES 20 B 308 THR LEU GLU ALA LEU GLN LYS ASP PRO LEU LEU GLY LYS SEQRES 21 B 308 ILE ASN ALA ILE LYS ASN GLY ALA VAL ALA VAL ILE PRO SEQRES 22 B 308 ASP ASN THR PRO LEU ALA ALA SER CYS THR PRO THR PRO SEQRES 23 B 308 LEU SER ILE ASN TYR THR ILE GLU GLU TYR LEU ASN LEU SEQRES 24 B 308 LEU GLY ASN ALA CYS LYS ASN ALA LYS HET FE A 401 1 HET 6L0 A 402 42 HET CL A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET FE B 401 1 HET 6L0 B 402 42 HET GOL B 403 6 HET GOL B 404 6 HETNAM FE FE (III) ION HETNAM 6L0 (8E)-6,17,28-TRIHYDROXY-1,6,12,17,23,28- HETNAM 2 6L0 HEXAAZACYCLOTRITRIACONT-8-ENE-2,5,13,16,24,27-HEXONE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FE 2(FE 3+) FORMUL 4 6L0 2(C27 H46 N6 O9) FORMUL 5 CL CL 1- FORMUL 6 GOL 4(C3 H8 O3) FORMUL 12 HOH *543(H2 O) HELIX 1 AA1 GLY A 64 LEU A 72 1 9 HELIX 2 AA2 LEU A 93 LEU A 103 1 11 HELIX 3 AA3 ASN A 117 SER A 124 1 8 HELIX 4 AA4 THR A 137 ALA A 148 1 12 HELIX 5 AA5 LEU A 161 LEU A 173 1 13 HELIX 6 AA6 MET A 175 HIS A 197 1 23 HELIX 7 AA7 HIS A 197 LYS A 205 1 9 HELIX 8 AA8 ASP A 229 LEU A 238 1 10 HELIX 9 AA9 SER A 245 GLU A 250 1 6 HELIX 10 AB1 GLU A 262 ASN A 268 5 7 HELIX 11 AB2 LYS A 280 LYS A 287 1 8 HELIX 12 AB3 LEU A 290 LYS A 293 5 4 HELIX 13 AB4 ILE A 294 GLY A 300 1 7 HELIX 14 AB5 THR A 309 SER A 314 1 6 HELIX 15 AB6 THR A 318 LYS A 338 1 21 HELIX 16 AB7 GLY B 64 LEU B 72 1 9 HELIX 17 AB8 LEU B 93 LEU B 103 1 11 HELIX 18 AB9 ASN B 117 SER B 124 1 8 HELIX 19 AC1 THR B 137 ALA B 148 1 12 HELIX 20 AC2 LEU B 161 LEU B 173 1 13 HELIX 21 AC3 MET B 175 HIS B 197 1 23 HELIX 22 AC4 HIS B 197 LYS B 205 1 9 HELIX 23 AC5 ASP B 229 LEU B 238 1 10 HELIX 24 AC6 PRO B 243 GLU B 250 5 8 HELIX 25 AC7 GLU B 263 ASN B 268 5 6 HELIX 26 AC8 LYS B 280 LYS B 287 1 8 HELIX 27 AC9 LEU B 290 LYS B 293 5 4 HELIX 28 AD1 ILE B 294 ASN B 299 1 6 HELIX 29 AD2 THR B 309 SER B 314 1 6 HELIX 30 AD3 THR B 318 ASN B 339 1 22 SHEET 1 AA1 2 ILE A 40 HIS A 44 0 SHEET 2 AA1 2 GLY A 47 LEU A 51 -1 O LEU A 51 N ILE A 40 SHEET 1 AA2 3 VAL A 58 THR A 60 0 SHEET 2 AA2 3 VAL A 128 LEU A 130 1 O LEU A 130 N ALA A 59 SHEET 3 AA2 3 VAL A 150 ALA A 151 1 O ALA A 151 N ILE A 129 SHEET 1 AA3 2 PHE A 79 SER A 80 0 SHEET 2 AA3 2 LEU A 109 PHE A 110 1 O PHE A 110 N PHE A 79 SHEET 1 AA4 5 ALA A 256 SER A 260 0 SHEET 2 AA4 5 LYS A 221 TYR A 225 -1 N ILE A 224 O LYS A 257 SHEET 3 AA4 5 VAL A 209 MET A 213 -1 N PHE A 211 O TYR A 225 SHEET 4 AA4 5 VAL A 272 GLY A 277 1 O ILE A 274 N THR A 212 SHEET 5 AA4 5 VAL A 302 PRO A 306 1 O ILE A 305 N THR A 275 SHEET 1 AA5 2 ILE B 40 HIS B 44 0 SHEET 2 AA5 2 GLY B 47 LEU B 51 -1 O THR B 49 N LEU B 42 SHEET 1 AA6 3 VAL B 58 THR B 60 0 SHEET 2 AA6 3 VAL B 128 LEU B 130 1 O LEU B 130 N ALA B 59 SHEET 3 AA6 3 VAL B 150 ALA B 151 1 O ALA B 151 N ILE B 129 SHEET 1 AA7 2 PHE B 79 SER B 80 0 SHEET 2 AA7 2 LEU B 109 PHE B 110 1 O PHE B 110 N PHE B 79 SHEET 1 AA8 5 ALA B 256 SER B 260 0 SHEET 2 AA8 5 LYS B 221 TYR B 225 -1 N ILE B 224 O LYS B 257 SHEET 3 AA8 5 VAL B 209 MET B 213 -1 N PHE B 211 O TYR B 225 SHEET 4 AA8 5 VAL B 272 GLY B 277 1 O ILE B 274 N THR B 212 SHEET 5 AA8 5 VAL B 302 PRO B 306 1 O ILE B 305 N THR B 275 LINK FE FE A 401 OAE 6L0 A 402 1555 1555 2.16 LINK FE FE A 401 NBO 6L0 A 402 1555 1555 2.76 LINK FE FE A 401 OAH 6L0 A 402 1555 1555 2.07 LINK FE FE A 401 OAG 6L0 A 402 1555 1555 2.11 LINK FE FE A 401 OAD 6L0 A 402 1555 1555 2.13 LINK FE FE A 401 OAF 6L0 A 402 1555 1555 2.10 LINK FE FE A 401 OAI 6L0 A 402 1555 1555 2.07 LINK FE FE B 401 OAG 6L0 B 402 1555 1555 2.20 LINK FE FE B 401 OAI 6L0 B 402 1555 1555 2.10 LINK FE FE B 401 OAH 6L0 B 402 1555 1555 2.20 LINK FE FE B 401 OAD 6L0 B 402 1555 1555 2.12 LINK FE FE B 401 OAF 6L0 B 402 1555 1555 2.19 LINK FE FE B 401 OAE 6L0 B 402 1555 1555 2.18 SITE 1 AC1 1 6L0 A 402 SITE 1 AC2 16 ASN A 83 TYR A 84 TYR A 133 TRP A 158 SITE 2 AC2 16 MET A 213 TRP A 223 TYR A 225 ARG A 231 SITE 3 AC2 16 PHE A 255 TYR A 276 FE A 401 HOH A 505 SITE 4 AC2 16 HOH A 512 HOH A 532 HOH A 606 ASP B 89 SITE 1 AC3 4 HIS A 197 PRO A 198 GLU A 199 HOH A 620 SITE 1 AC4 2 ARG A 163 LYS A 167 SITE 1 AC5 3 GLN A 286 LYS A 298 ASN A 299 SITE 1 AC6 1 6L0 B 402 SITE 1 AC7 16 TRP B 63 ASN B 83 TYR B 84 TYR B 133 SITE 2 AC7 16 TRP B 158 MET B 213 TRP B 223 TYR B 225 SITE 3 AC7 16 ARG B 231 PHE B 255 TYR B 276 FE B 401 SITE 4 AC7 16 HOH B 511 HOH B 548 HOH B 618 HOH B 625 SITE 1 AC8 4 LYS A 280 TYR B 324 HOH B 581 HOH B 663 SITE 1 AC9 4 LYS B 156 PRO B 157 HOH B 621 HOH B 623 CRYST1 77.809 73.844 87.161 90.00 115.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012852 0.000000 0.006210 0.00000 SCALE2 0.000000 0.013542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012742 0.00000