HEADER TRANSFERASE 22-APR-16 5JJ6 TITLE FIC-1 (AA134 - 508) FROM C. ELEGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE FICD HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIDO DOMAIN, RESIDUES 134-508; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: ZK593.8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) LOBSTR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS AMPYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.E.CRUZ,T.U.SCHWARTZ REVDAT 4 27-SEP-23 5JJ6 1 REMARK REVDAT 3 11-DEC-19 5JJ6 1 REMARK REVDAT 2 20-SEP-17 5JJ6 1 REMARK REVDAT 1 01-JUN-16 5JJ6 0 JRNL AUTH M.C.TRUTTMAN,V.E.CRUZ,X.GUO,C.ENGERT,T.U.SCHWARTZ,H.L.PLOEGH JRNL TITL FIC-1 DIMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 122.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 27914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1123.0797 - 7.0053 0.97 1928 149 0.1652 0.2181 REMARK 3 2 7.0053 - 5.5603 0.95 1825 141 0.2164 0.2739 REMARK 3 3 5.5603 - 4.8574 0.99 1896 146 0.2079 0.2286 REMARK 3 4 4.8574 - 4.4133 1.00 1891 146 0.1798 0.2406 REMARK 3 5 4.4133 - 4.0969 0.98 1845 142 0.1880 0.2164 REMARK 3 6 4.0969 - 3.8554 0.96 1809 139 0.1956 0.2461 REMARK 3 7 3.8554 - 3.6623 0.99 1870 145 0.2066 0.2677 REMARK 3 8 3.6623 - 3.5028 0.99 1878 145 0.2151 0.2632 REMARK 3 9 3.5028 - 3.3680 1.00 1874 144 0.2275 0.2659 REMARK 3 10 3.3680 - 3.2517 0.99 1859 144 0.2386 0.2924 REMARK 3 11 3.2517 - 3.1501 0.99 1860 144 0.2521 0.3180 REMARK 3 12 3.1501 - 3.0600 0.94 1760 135 0.2574 0.3172 REMARK 3 13 3.0600 - 2.9795 0.98 1869 143 0.2701 0.3014 REMARK 3 14 2.9795 - 2.9068 0.94 1751 136 0.3059 0.3767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5174 REMARK 3 ANGLE : 1.321 7021 REMARK 3 CHIRALITY : 0.054 822 REMARK 3 PLANARITY : 0.007 909 REMARK 3 DIHEDRAL : 15.716 1910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28518 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.907 REMARK 200 RESOLUTION RANGE LOW (A) : 122.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5ED8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 96.07600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.46950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.83867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 96.07600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 55.46950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.83867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 96.07600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 55.46950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.83867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 96.07600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 55.46950 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.83867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 96.07600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 55.46950 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.83867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 96.07600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 55.46950 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.83867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 110.93901 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 121.67733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 110.93901 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 121.67733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 110.93901 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 121.67733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 110.93901 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 121.67733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 110.93901 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 121.67733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 110.93901 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 121.67733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 ASP A 134 REMARK 465 GLU A 135 REMARK 465 LYS A 136 REMARK 465 ARG A 137 REMARK 465 GLU A 138 REMARK 465 ASN A 139 REMARK 465 ASP A 140 REMARK 465 PRO A 141 REMARK 465 ALA A 142 REMARK 465 LYS A 143 REMARK 465 VAL A 144 REMARK 465 VAL A 357 REMARK 465 GLY A 358 REMARK 465 ARG A 359 REMARK 465 PHE A 360 REMARK 465 ASP A 479 REMARK 465 ASN A 480 REMARK 465 ILE A 481 REMARK 465 LEU A 482 REMARK 465 ASN A 483 REMARK 465 SER A 484 REMARK 465 GLY A 485 REMARK 465 ASP A 486 REMARK 465 SER A 487 REMARK 465 LYS A 488 REMARK 465 LEU A 489 REMARK 465 THR A 490 REMARK 465 PRO A 491 REMARK 465 GLU A 492 REMARK 465 GLU A 493 REMARK 465 SER A 494 REMARK 465 GLU A 495 REMARK 465 VAL A 496 REMARK 465 SER A 497 REMARK 465 GLU A 498 REMARK 465 LYS A 499 REMARK 465 ILE A 500 REMARK 465 GLU A 501 REMARK 465 ALA A 502 REMARK 465 GLU A 503 REMARK 465 CYS A 504 REMARK 465 ARG A 505 REMARK 465 ALA A 506 REMARK 465 GLY A 507 REMARK 465 ASN A 508 REMARK 465 MET B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 ASP B 134 REMARK 465 GLU B 135 REMARK 465 LYS B 136 REMARK 465 ARG B 137 REMARK 465 THR B 353 REMARK 465 GLN B 354 REMARK 465 VAL B 355 REMARK 465 TYR B 356 REMARK 465 LYS B 475 REMARK 465 THR B 476 REMARK 465 SER B 477 REMARK 465 SER B 478 REMARK 465 ASP B 479 REMARK 465 ASN B 480 REMARK 465 ILE B 481 REMARK 465 LEU B 482 REMARK 465 ASN B 483 REMARK 465 SER B 484 REMARK 465 GLY B 485 REMARK 465 ASP B 486 REMARK 465 SER B 487 REMARK 465 LYS B 488 REMARK 465 LEU B 489 REMARK 465 THR B 490 REMARK 465 PRO B 491 REMARK 465 GLU B 492 REMARK 465 GLU B 493 REMARK 465 SER B 494 REMARK 465 GLU B 495 REMARK 465 VAL B 496 REMARK 465 SER B 497 REMARK 465 GLU B 498 REMARK 465 LYS B 499 REMARK 465 ILE B 500 REMARK 465 GLU B 501 REMARK 465 ALA B 502 REMARK 465 GLU B 503 REMARK 465 CYS B 504 REMARK 465 ARG B 505 REMARK 465 ALA B 506 REMARK 465 GLY B 507 REMARK 465 ASN B 508 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 MET A 170 CG SD CE REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 ASN A 180 CG OD1 ND2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 MET A 193 CG SD CE REMARK 470 HIS A 194 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 MET A 259 CG SD CE REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 ASP A 324 CG OD1 OD2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 ASP A 329 CG OD1 OD2 REMARK 470 TYR A 356 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 367 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 LEU B 163 CG CD1 CD2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 251 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 SER B 320 OG REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 GLU B 322 CG CD OE1 OE2 REMARK 470 ASP B 324 CG OD1 OD2 REMARK 470 THR B 352 OG1 CG2 REMARK 470 VAL B 357 CG1 CG2 REMARK 470 ARG B 359 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 374 CG OD1 OD2 REMARK 470 ASP B 408 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 149 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 178 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU A 249 CA - CB - CG ANGL. DEV. = 21.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 160 45.40 -106.52 REMARK 500 ASN A 162 78.05 51.24 REMARK 500 PRO A 178 -90.54 -71.24 REMARK 500 ASN A 247 46.56 -72.99 REMARK 500 LEU A 249 147.49 178.88 REMARK 500 SER A 317 -52.65 -136.94 REMARK 500 ASP A 343 77.48 -151.56 REMARK 500 SER A 364 133.82 -39.54 REMARK 500 GLU A 366 39.41 -69.87 REMARK 500 ALA B 153 57.34 -104.60 REMARK 500 ALA B 154 -138.17 -169.02 REMARK 500 ASN B 162 175.57 59.39 REMARK 500 LEU B 163 -88.52 -31.45 REMARK 500 SER B 317 -42.83 -134.99 REMARK 500 ASP B 324 -87.31 54.16 REMARK 500 HIS B 404 70.36 43.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 367 VAL A 368 -133.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 601 DBREF 5JJ6 A 134 508 UNP Q23544 FICD_CAEEL 134 508 DBREF 5JJ6 B 134 508 UNP Q23544 FICD_CAEEL 134 508 SEQADV 5JJ6 MET A 127 UNP Q23544 INITIATING METHIONINE SEQADV 5JJ6 HIS A 128 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS A 129 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS A 130 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS A 131 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS A 132 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS A 133 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 MET B 127 UNP Q23544 INITIATING METHIONINE SEQADV 5JJ6 HIS B 128 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS B 129 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS B 130 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS B 131 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS B 132 UNP Q23544 EXPRESSION TAG SEQADV 5JJ6 HIS B 133 UNP Q23544 EXPRESSION TAG SEQRES 1 A 382 MET HIS HIS HIS HIS HIS HIS ASP GLU LYS ARG GLU ASN SEQRES 2 A 382 ASP PRO ALA LYS VAL LYS GLU ALA ILE LEU ALA ALA LYS SEQRES 3 A 382 ALA ALA GLY ARG SER ARG LYS ASP GLY ASN LEU GLU ARG SEQRES 4 A 382 ALA MET THR ILE MET GLU HIS ALA MET ALA LEU ALA PRO SEQRES 5 A 382 THR ASN PRO GLN ILE LEU ILE GLU MET GLY GLN ILE ARG SEQRES 6 A 382 GLU MET HIS ASN GLU LEU VAL GLU ALA ASP GLN CYS TYR SEQRES 7 A 382 VAL LYS ALA LEU ALA TYR ASP PRO GLY ASN SER GLU ALA SEQRES 8 A 382 LEU VAL LEU ARG ALA ARG THR THR PRO LEU VAL SER ALA SEQRES 9 A 382 ILE ASP ARG LYS MET LEU ARG SER VAL HIS ASP LEU ARG SEQRES 10 A 382 ASP GLU PHE ASN HIS LEU GLN HIS SER THR ALA LEU ARG SEQRES 11 A 382 ARG MET MET ARG GLU THR TYR PHE LEU TYR VAL TYR HIS SEQRES 12 A 382 THR VAL ALA ILE GLU GLY ASN THR LEU SER LEU GLY GLN SEQRES 13 A 382 THR ARG ALA ILE LEU GLU SER GLY MET VAL ILE PRO GLY SEQRES 14 A 382 LYS SER ILE ARG GLU HIS ASN GLU VAL ILE GLY MET ASP SEQRES 15 A 382 ALA ALA LEU ARG PHE LEU ASN CYS SER LEU LEU SER LYS SEQRES 16 A 382 GLU HIS ASP GLU ILE SER ILE ASP ASP ILE LEU GLU MET SEQRES 17 A 382 HIS ARG ARG VAL LEU GLY ASN ALA ASP PRO VAL GLU ALA SEQRES 18 A 382 GLY ARG ILE ARG THR THR GLN VAL TYR VAL GLY ARG PHE SEQRES 19 A 382 THR PRO VAL SER PRO GLU TYR VAL MET GLU GLN LEU LYS SEQRES 20 A 382 ASP ILE VAL ASP TRP LEU ASN ASP GLU SER THR LEU THR SEQRES 21 A 382 ILE ASP PRO ILE GLU ARG ALA ALA ILE ALA HIS TYR LYS SEQRES 22 A 382 LEU VAL LEU VAL HIS PRO PHE THR ASP GLY ASN GLY ARG SEQRES 23 A 382 THR ALA ARG LEU LEU LEU ASN LEU ILE MET MET ARG SER SEQRES 24 A 382 GLY PHE PRO PRO VAL ILE LEU PRO VAL GLU THR ARG ALA SEQRES 25 A 382 GLU TYR TYR ALA SER LEU HIS VAL ALA ASN LEU GLY ASP SEQRES 26 A 382 LEU ARG PRO PHE VAL ARG TYR VAL ALA LYS HIS SER GLU SEQRES 27 A 382 ALA SER ILE GLN ARG TYR ILE GLY ALA MET LYS THR SER SEQRES 28 A 382 SER ASP ASN ILE LEU ASN SER GLY ASP SER LYS LEU THR SEQRES 29 A 382 PRO GLU GLU SER GLU VAL SER GLU LYS ILE GLU ALA GLU SEQRES 30 A 382 CYS ARG ALA GLY ASN SEQRES 1 B 382 MET HIS HIS HIS HIS HIS HIS ASP GLU LYS ARG GLU ASN SEQRES 2 B 382 ASP PRO ALA LYS VAL LYS GLU ALA ILE LEU ALA ALA LYS SEQRES 3 B 382 ALA ALA GLY ARG SER ARG LYS ASP GLY ASN LEU GLU ARG SEQRES 4 B 382 ALA MET THR ILE MET GLU HIS ALA MET ALA LEU ALA PRO SEQRES 5 B 382 THR ASN PRO GLN ILE LEU ILE GLU MET GLY GLN ILE ARG SEQRES 6 B 382 GLU MET HIS ASN GLU LEU VAL GLU ALA ASP GLN CYS TYR SEQRES 7 B 382 VAL LYS ALA LEU ALA TYR ASP PRO GLY ASN SER GLU ALA SEQRES 8 B 382 LEU VAL LEU ARG ALA ARG THR THR PRO LEU VAL SER ALA SEQRES 9 B 382 ILE ASP ARG LYS MET LEU ARG SER VAL HIS ASP LEU ARG SEQRES 10 B 382 ASP GLU PHE ASN HIS LEU GLN HIS SER THR ALA LEU ARG SEQRES 11 B 382 ARG MET MET ARG GLU THR TYR PHE LEU TYR VAL TYR HIS SEQRES 12 B 382 THR VAL ALA ILE GLU GLY ASN THR LEU SER LEU GLY GLN SEQRES 13 B 382 THR ARG ALA ILE LEU GLU SER GLY MET VAL ILE PRO GLY SEQRES 14 B 382 LYS SER ILE ARG GLU HIS ASN GLU VAL ILE GLY MET ASP SEQRES 15 B 382 ALA ALA LEU ARG PHE LEU ASN CYS SER LEU LEU SER LYS SEQRES 16 B 382 GLU HIS ASP GLU ILE SER ILE ASP ASP ILE LEU GLU MET SEQRES 17 B 382 HIS ARG ARG VAL LEU GLY ASN ALA ASP PRO VAL GLU ALA SEQRES 18 B 382 GLY ARG ILE ARG THR THR GLN VAL TYR VAL GLY ARG PHE SEQRES 19 B 382 THR PRO VAL SER PRO GLU TYR VAL MET GLU GLN LEU LYS SEQRES 20 B 382 ASP ILE VAL ASP TRP LEU ASN ASP GLU SER THR LEU THR SEQRES 21 B 382 ILE ASP PRO ILE GLU ARG ALA ALA ILE ALA HIS TYR LYS SEQRES 22 B 382 LEU VAL LEU VAL HIS PRO PHE THR ASP GLY ASN GLY ARG SEQRES 23 B 382 THR ALA ARG LEU LEU LEU ASN LEU ILE MET MET ARG SER SEQRES 24 B 382 GLY PHE PRO PRO VAL ILE LEU PRO VAL GLU THR ARG ALA SEQRES 25 B 382 GLU TYR TYR ALA SER LEU HIS VAL ALA ASN LEU GLY ASP SEQRES 26 B 382 LEU ARG PRO PHE VAL ARG TYR VAL ALA LYS HIS SER GLU SEQRES 27 B 382 ALA SER ILE GLN ARG TYR ILE GLY ALA MET LYS THR SER SEQRES 28 B 382 SER ASP ASN ILE LEU ASN SER GLY ASP SER LYS LEU THR SEQRES 29 B 382 PRO GLU GLU SER GLU VAL SER GLU LYS ILE GLU ALA GLU SEQRES 30 B 382 CYS ARG ALA GLY ASN HET SO4 A 601 5 HET SO4 B 601 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *6(H2 O) HELIX 1 AA1 GLU A 146 ASP A 160 1 15 HELIX 2 AA2 LEU A 163 ALA A 177 1 15 HELIX 3 AA3 ASN A 180 HIS A 194 1 15 HELIX 4 AA4 GLU A 196 ASP A 211 1 16 HELIX 5 AA5 ASN A 214 GLU A 245 1 32 HELIX 6 AA6 HIS A 251 ILE A 273 1 23 HELIX 7 AA7 SER A 279 GLY A 290 1 12 HELIX 8 AA8 SER A 297 SER A 317 1 21 HELIX 9 AA9 SER A 327 GLY A 340 1 14 HELIX 10 AB1 VAL A 368 ASP A 381 1 14 HELIX 11 AB2 GLU A 382 THR A 386 5 5 HELIX 12 AB3 ASP A 388 HIS A 404 1 17 HELIX 13 AB4 GLY A 409 ARG A 424 1 16 HELIX 14 AB5 PRO A 433 GLU A 435 5 3 HELIX 15 AB6 THR A 436 ASN A 448 1 13 HELIX 16 AB7 LEU A 452 SER A 477 1 26 HELIX 17 AB8 PRO B 141 ALA B 153 1 13 HELIX 18 AB9 ASN B 162 ALA B 177 1 16 HELIX 19 AC1 ASN B 180 HIS B 194 1 15 HELIX 20 AC2 GLU B 196 ASP B 211 1 16 HELIX 21 AC3 ASN B 214 ASN B 247 1 34 HELIX 22 AC4 SER B 252 GLY B 275 1 24 HELIX 23 AC5 SER B 279 SER B 289 1 11 HELIX 24 AC6 SER B 297 LEU B 318 1 22 HELIX 25 AC7 SER B 327 GLY B 340 1 14 HELIX 26 AC8 SER B 364 ASP B 381 1 18 HELIX 27 AC9 GLU B 382 THR B 386 5 5 HELIX 28 AD1 ASP B 388 HIS B 404 1 17 HELIX 29 AD2 GLY B 409 ARG B 424 1 16 HELIX 30 AD3 PRO B 433 GLU B 435 5 3 HELIX 31 AD4 THR B 436 ASN B 448 1 13 HELIX 32 AD5 LEU B 452 ALA B 473 1 22 SITE 1 AC1 5 GLU A 274 ASP A 408 GLY A 409 ASN A 410 SITE 2 AC1 5 GLY A 411 SITE 1 AC2 5 GLU B 274 GLY B 409 ASN B 410 GLY B 411 SITE 2 AC2 5 ARG B 412 CRYST1 192.152 192.152 182.516 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005204 0.003005 0.000000 0.00000 SCALE2 0.000000 0.006009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005479 0.00000