HEADER SIGNALING PROTEIN 23-APR-16 5JJF TITLE STRUCTURE OF THE SRII/HTRII COMPLEX IN I212121 SPACE GROUP ("U" SHAPE) TITLE 2 - M STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSORY RHODOPSIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SENSORY RHODOPSIN II,SR-II; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SENSORY RHODOPSIN II TRANSDUCER; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HTR-II,METHYL-ACCEPTING PHOTOTAXIS PROTEIN II,MPP-II; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NATRONOMONAS PHARAONIS; SOURCE 3 ORGANISM_COMMON: NATRONOBACTERIUM PHARAONIS; SOURCE 4 ORGANISM_TAXID: 2257; SOURCE 5 GENE: SOP2, SOPII; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: NATRONOMONAS PHARAONIS; SOURCE 10 ORGANISM_COMMON: NATRONOBACTERIUM PHARAONIS; SOURCE 11 ORGANISM_TAXID: 2257; SOURCE 12 GENE: HTR2, HTRII; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SENSORY RHODOPSIN II, TRANSDUCER, MEMBRANE PROTEIN COMPLEX, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ISHCHENKO,E.ROUND,V.BORSHCHEVSKIY,S.GRUDININ,I.GUSHCHIN,J.KLARE, AUTHOR 2 A.REMEEVA,V.POLOVINKIN,P.UTROBIN,T.BALANDIN,M.ENGELHARD,G.BUELDT, AUTHOR 3 V.GORDELIY REVDAT 3 10-JAN-24 5JJF 1 HETSYN REVDAT 2 29-JUL-20 5JJF 1 COMPND REMARK HETNAM SITE REVDAT 1 15-FEB-17 5JJF 0 JRNL AUTH A.ISHCHENKO,E.ROUND,V.BORSHCHEVSKIY,S.GRUDININ,I.GUSHCHIN, JRNL AUTH 2 J.P.KLARE,A.REMEEVA,V.POLOVINKIN,P.UTROBIN,T.BALANDIN, JRNL AUTH 3 M.ENGELHARD,G.BULDT,V.GORDELIY JRNL TITL NEW INSIGHTS ON SIGNAL PROPAGATION BY SENSORY RHODOPSIN JRNL TITL 2 II/TRANSDUCER COMPLEX. JRNL REF SCI REP V. 7 41811 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28165484 JRNL DOI 10.1038/SREP41811 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 28023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.0913 - 3.2480 1.00 2750 133 0.1922 0.2336 REMARK 3 2 3.2480 - 2.8377 1.00 2696 140 0.1907 0.2260 REMARK 3 3 2.8377 - 2.5783 1.00 2684 149 0.1783 0.2385 REMARK 3 4 2.5783 - 2.3935 1.00 2659 154 0.1787 0.2329 REMARK 3 5 2.3935 - 2.2524 1.00 2671 128 0.1850 0.2128 REMARK 3 6 2.2524 - 2.1396 1.00 2688 140 0.2456 0.3090 REMARK 3 7 2.1396 - 2.0465 0.98 2594 142 0.1990 0.2203 REMARK 3 8 2.0465 - 1.9677 0.97 2567 140 0.2180 0.2866 REMARK 3 9 1.9677 - 1.9000 0.96 2532 144 0.2602 0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4449 REMARK 3 ANGLE : 1.303 6028 REMARK 3 CHIRALITY : 0.288 733 REMARK 3 PLANARITY : 0.008 718 REMARK 3 DIHEDRAL : 14.572 1536 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8685 2.6195 38.7603 REMARK 3 T TENSOR REMARK 3 T11: 0.0861 T22: 0.1639 REMARK 3 T33: 0.0449 T12: -0.0017 REMARK 3 T13: 0.0314 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.1349 L22: 0.1003 REMARK 3 L33: 0.0009 L12: 0.0250 REMARK 3 L13: 0.0022 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: -0.0124 S13: -0.0420 REMARK 3 S21: -0.0366 S22: -0.0294 S23: -0.0512 REMARK 3 S31: 0.0411 S32: 0.0845 S33: -0.4841 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2831 -21.2021 34.0298 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.4195 REMARK 3 T33: 0.7691 T12: -0.0006 REMARK 3 T13: 0.1286 T23: -0.1149 REMARK 3 L TENSOR REMARK 3 L11: 0.0461 L22: 0.0080 REMARK 3 L33: 0.0033 L12: 0.0132 REMARK 3 L13: -0.0054 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.0093 S13: -0.0007 REMARK 3 S21: -0.0020 S22: -0.0414 S23: -0.0159 REMARK 3 S31: 0.0224 S32: 0.0235 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4636 2.4565 37.4948 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.0954 REMARK 3 T33: 0.0278 T12: 0.0312 REMARK 3 T13: 0.0211 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.2379 L22: 0.0602 REMARK 3 L33: 0.3301 L12: 0.0085 REMARK 3 L13: 0.1161 L23: -0.0103 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.0510 S13: 0.0142 REMARK 3 S21: 0.0038 S22: -0.0210 S23: 0.0019 REMARK 3 S31: -0.0044 S32: 0.0393 S33: -0.8471 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2566 -2.3305 44.2328 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0606 REMARK 3 T33: 0.1028 T12: 0.0598 REMARK 3 T13: -0.0353 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 0.1836 L22: 0.1917 REMARK 3 L33: 0.1094 L12: -0.1400 REMARK 3 L13: -0.0756 L23: 0.0864 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0350 S13: 0.0216 REMARK 3 S21: -0.0412 S22: -0.0548 S23: 0.0760 REMARK 3 S31: -0.0009 S32: -0.0467 S33: -0.2210 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3804 4.5431 53.2726 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1291 REMARK 3 T33: 0.2281 T12: 0.0648 REMARK 3 T13: 0.0187 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 0.0913 L22: 0.0033 REMARK 3 L33: 0.1445 L12: 0.0177 REMARK 3 L13: -0.0178 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.0029 S13: 0.0636 REMARK 3 S21: 0.0093 S22: -0.0243 S23: 0.0706 REMARK 3 S31: -0.0937 S32: -0.1277 S33: -0.4468 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5488 -20.6913 52.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1004 REMARK 3 T33: 0.2077 T12: 0.0165 REMARK 3 T13: 0.0862 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.0665 L22: 0.0583 REMARK 3 L33: 0.0195 L12: -0.0525 REMARK 3 L13: -0.0090 L23: 0.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0124 S13: -0.0215 REMARK 3 S21: -0.0059 S22: -0.0172 S23: 0.0200 REMARK 3 S31: 0.0420 S32: 0.0001 S33: 0.0206 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2558 -6.1888 53.8911 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0235 REMARK 3 T33: 0.0547 T12: 0.0160 REMARK 3 T13: 0.0197 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.1204 L22: 0.1653 REMARK 3 L33: 0.1245 L12: -0.0439 REMARK 3 L13: -0.0124 L23: 0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.0490 S13: -0.0033 REMARK 3 S21: 0.0247 S22: -0.0204 S23: 0.0339 REMARK 3 S31: -0.0141 S32: -0.0355 S33: -0.1789 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6292 0.1740 48.7016 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.0994 REMARK 3 T33: 0.0976 T12: 0.0738 REMARK 3 T13: -0.0131 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.0854 L22: 0.1009 REMARK 3 L33: 0.1787 L12: 0.0662 REMARK 3 L13: -0.0743 L23: -0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: -0.0222 S13: -0.0170 REMARK 3 S21: 0.0035 S22: -0.0896 S23: -0.0986 REMARK 3 S31: 0.0164 S32: 0.1164 S33: -0.9556 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6390 10.8956 54.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.3831 T22: 0.2883 REMARK 3 T33: 0.3130 T12: -0.0429 REMARK 3 T13: -0.0348 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.2529 L22: 0.0362 REMARK 3 L33: 0.4853 L12: 0.2123 REMARK 3 L13: -0.7756 L23: -0.1320 REMARK 3 S TENSOR REMARK 3 S11: -0.2099 S12: 0.1844 S13: -0.3933 REMARK 3 S21: -0.0856 S22: -0.1003 S23: -0.1293 REMARK 3 S31: 0.0746 S32: 0.2384 S33: -0.1755 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6731 8.4069 59.8501 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.1110 REMARK 3 T33: 0.0666 T12: 0.0829 REMARK 3 T13: -0.1242 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.0296 L22: 0.0016 REMARK 3 L33: 0.0111 L12: 0.0022 REMARK 3 L13: 0.0004 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.0422 S13: 0.0388 REMARK 3 S21: 0.0324 S22: -0.0065 S23: -0.0016 REMARK 3 S31: -0.0702 S32: -0.0129 S33: -0.8169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1H2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NA/K PHOSPHATE , PH 5.6, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.77900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.69350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.88950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.69350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.77900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.88950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.77900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.88950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.69350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.88950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.77900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.69350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 24.77900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 125.38700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 223 REMARK 465 GLY A 224 REMARK 465 GLU A 225 REMARK 465 SER A 226 REMARK 465 LEU A 227 REMARK 465 ALA A 228 REMARK 465 GLY A 229 REMARK 465 VAL A 230 REMARK 465 ASP A 231 REMARK 465 THR A 232 REMARK 465 ASP A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 ALA A 236 REMARK 465 VAL A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 SER A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 ALA B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 ARG B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 VAL B 14 REMARK 465 ARG B 15 REMARK 465 HIS B 16 REMARK 465 SER B 17 REMARK 465 TYR B 18 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 LYS B 21 REMARK 465 ASP B 85 REMARK 465 THR B 86 REMARK 465 ALA B 87 REMARK 465 ALA B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 SER B 91 REMARK 465 THR B 92 REMARK 465 LEU B 93 REMARK 465 ALA B 94 REMARK 465 ALA B 95 REMARK 465 LYS B 96 REMARK 465 ALA B 97 REMARK 465 SER B 98 REMARK 465 ARG B 99 REMARK 465 MET B 100 REMARK 465 GLY B 101 REMARK 465 ASP B 102 REMARK 465 GLY B 103 REMARK 465 ASP B 104 REMARK 465 LEU B 105 REMARK 465 ASP B 106 REMARK 465 VAL B 107 REMARK 465 GLU B 108 REMARK 465 LEU B 109 REMARK 465 GLU B 110 REMARK 465 THR B 111 REMARK 465 ARG B 112 REMARK 465 ARG B 113 REMARK 465 GLU B 114 REMARK 465 ASP B 115 REMARK 465 GLU B 116 REMARK 465 ILE B 117 REMARK 465 GLY B 118 REMARK 465 ASP B 119 REMARK 465 LEU B 120 REMARK 465 TYR B 121 REMARK 465 ALA B 122 REMARK 465 ALA B 123 REMARK 465 PHE B 124 REMARK 465 ASP B 125 REMARK 465 GLU B 126 REMARK 465 MET B 127 REMARK 465 ARG B 128 REMARK 465 GLN B 129 REMARK 465 SER B 130 REMARK 465 VAL B 131 REMARK 465 ARG B 132 REMARK 465 THR B 133 REMARK 465 SER B 134 REMARK 465 LEU B 135 REMARK 465 GLU B 136 REMARK 465 ASP B 137 REMARK 465 ALA B 138 REMARK 465 LYS B 139 REMARK 465 ASN B 140 REMARK 465 ALA B 141 REMARK 465 ARG B 142 REMARK 465 GLU B 143 REMARK 465 ASP B 144 REMARK 465 ALA B 145 REMARK 465 GLU B 146 REMARK 465 GLN B 147 REMARK 465 ALA B 148 REMARK 465 GLN B 149 REMARK 465 LYS B 150 REMARK 465 ARG B 151 REMARK 465 ALA B 152 REMARK 465 GLU B 153 REMARK 465 GLU B 154 REMARK 465 ILE B 155 REMARK 465 ASN B 156 REMARK 465 THR B 157 REMARK 465 ASN B 158 REMARK 465 SER B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 204 C LYS A 205 N 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 64 -121.12 51.05 REMARK 500 ALA A 64 -125.64 52.33 REMARK 500 LYS A 205 -61.77 -107.86 REMARK 500 LYS A 205 -63.31 -103.65 REMARK 500 ALA A 221 40.71 -101.28 REMARK 500 THR B 81 -62.11 -97.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA B 201 REMARK 610 LFA B 202 REMARK 610 LFA B 203 DBREF 5JJF A 2 239 UNP P42196 BACS2_NATPH 2 239 DBREF 5JJF B 5 157 UNP P42259 HTR2_NATPH 5 157 SEQADV 5JJF GLU A 240 UNP P42196 EXPRESSION TAG SEQADV 5JJF ASN A 241 UNP P42196 EXPRESSION TAG SEQADV 5JJF SER A 242 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 243 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 244 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 245 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 246 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 247 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 248 UNP P42196 EXPRESSION TAG SEQADV 5JJF HIS A 249 UNP P42196 EXPRESSION TAG SEQADV 5JJF ALA B 4 UNP P42259 EXPRESSION TAG SEQADV 5JJF ASN B 158 UNP P42259 EXPRESSION TAG SEQADV 5JJF SER B 159 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 160 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 161 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 162 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 163 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 164 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 165 UNP P42259 EXPRESSION TAG SEQADV 5JJF HIS B 166 UNP P42259 EXPRESSION TAG SEQRES 1 A 248 VAL GLY LEU THR THR LEU PHE TRP LEU GLY ALA ILE GLY SEQRES 2 A 248 MET LEU VAL GLY THR LEU ALA PHE ALA TRP ALA GLY ARG SEQRES 3 A 248 ASP ALA GLY SER GLY GLU ARG ARG TYR TYR VAL THR LEU SEQRES 4 A 248 VAL GLY ILE SER GLY ILE ALA ALA VAL ALA TYR VAL VAL SEQRES 5 A 248 MET ALA LEU GLY VAL GLY TRP VAL PRO VAL ALA GLU ARG SEQRES 6 A 248 THR VAL PHE ALA PRO ARG TYR ILE ASP TRP ILE LEU THR SEQRES 7 A 248 THR PRO LEU ILE VAL TYR PHE LEU GLY LEU LEU ALA GLY SEQRES 8 A 248 LEU ASP SER ARG GLU PHE GLY ILE VAL ILE THR LEU ASN SEQRES 9 A 248 THR VAL VAL MET LEU ALA GLY PHE ALA GLY ALA MET VAL SEQRES 10 A 248 PRO GLY ILE GLU ARG TYR ALA LEU PHE GLY MET GLY ALA SEQRES 11 A 248 VAL ALA PHE LEU GLY LEU VAL TYR TYR LEU VAL GLY PRO SEQRES 12 A 248 MET THR GLU SER ALA SER GLN ARG SER SER GLY ILE LYS SEQRES 13 A 248 SER LEU TYR VAL ARG LEU ARG ASN LEU THR VAL ILE LEU SEQRES 14 A 248 TRP ALA ILE TYR PRO PHE ILE TRP LEU LEU GLY PRO PRO SEQRES 15 A 248 GLY VAL ALA LEU LEU THR PRO THR VAL ASP VAL ALA LEU SEQRES 16 A 248 ILE VAL TYR LEU ASP LEU VAL THR LYS VAL GLY PHE GLY SEQRES 17 A 248 PHE ILE ALA LEU ASP ALA ALA ALA THR LEU ARG ALA GLU SEQRES 18 A 248 HIS GLY GLU SER LEU ALA GLY VAL ASP THR ASP ALA PRO SEQRES 19 A 248 ALA VAL ALA ASP GLU ASN SER HIS HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS SEQRES 1 B 163 ALA VAL SER ARG LEU LEU LEU PRO SER ARG VAL ARG HIS SEQRES 2 B 163 SER TYR THR GLY LYS MET GLY ALA VAL PHE ILE PHE VAL SEQRES 3 B 163 GLY ALA LEU THR VAL LEU PHE GLY ALA ILE ALA TYR GLY SEQRES 4 B 163 GLU VAL THR ALA ALA ALA ALA THR GLY ASP ALA ALA ALA SEQRES 5 B 163 VAL GLN GLU ALA ALA VAL SER ALA ILE LEU GLY LEU ILE SEQRES 6 B 163 ILE LEU LEU GLY ILE ASN LEU GLY LEU VAL ALA ALA THR SEQRES 7 B 163 LEU GLY GLY ASP THR ALA ALA SER LEU SER THR LEU ALA SEQRES 8 B 163 ALA LYS ALA SER ARG MET GLY ASP GLY ASP LEU ASP VAL SEQRES 9 B 163 GLU LEU GLU THR ARG ARG GLU ASP GLU ILE GLY ASP LEU SEQRES 10 B 163 TYR ALA ALA PHE ASP GLU MET ARG GLN SER VAL ARG THR SEQRES 11 B 163 SER LEU GLU ASP ALA LYS ASN ALA ARG GLU ASP ALA GLU SEQRES 12 B 163 GLN ALA GLN LYS ARG ALA GLU GLU ILE ASN THR ASN SER SEQRES 13 B 163 HIS HIS HIS HIS HIS HIS HIS HET RET A 301 40 HET BOG A 302 20 HET LFA A 303 10 HET LFA A 304 7 HET LFA A 305 10 HET LFA A 306 10 HET LFA A 307 16 HET LFA A 308 16 HET LFA A 309 10 HET LFA A 310 16 HET LFA A 311 5 HET LFA B 201 10 HET LFA B 202 5 HET LFA B 203 16 HETNAM RET RETINAL HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM LFA EICOSANE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE HETSYN LFA LIPID FRAGMENT FORMUL 3 RET C20 H28 O FORMUL 4 BOG C14 H28 O6 FORMUL 5 LFA 12(C20 H42) FORMUL 17 HOH *56(H2 O) HELIX 1 AA1 GLY A 3 GLY A 26 1 24 HELIX 2 AA2 GLU A 33 LEU A 56 1 24 HELIX 3 AA3 ALA A 70 GLY A 92 1 23 HELIX 4 AA4 ASP A 94 MET A 117 1 24 HELIX 5 AA5 GLU A 122 GLY A 143 1 22 HELIX 6 AA6 GLY A 143 SER A 150 1 8 HELIX 7 AA7 SER A 153 ALA A 172 1 20 HELIX 8 AA8 ILE A 173 GLY A 181 1 9 HELIX 9 AA9 THR A 189 ALA A 221 1 33 HELIX 10 AB1 GLY B 23 ALA B 49 1 27 HELIX 11 AB2 ASP B 52 GLY B 83 1 32 SHEET 1 AA1 2 TRP A 60 VAL A 63 0 SHEET 2 AA1 2 ARG A 66 PHE A 69 -1 O VAL A 68 N VAL A 61 LINK NZ GLYS A 205 C15GRET A 301 1555 1555 1.32 LINK NZ MLYS A 205 C15MRET A 301 1555 1555 1.26 CRYST1 49.558 113.779 125.387 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007975 0.00000