HEADER SIGNALING PROTEIN 24-APR-16 5JJJ TITLE STRUCTURE OF THE SRII/HTRII COMPLEX IN P64 SPACE GROUP ("U" SHAPE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSORY RHODOPSIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SENSORY RHODOPSIN II,SR-II; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SENSORY RHODOPSIN II TRANSDUCER; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HTR-II,METHYL-ACCEPTING PHOTOTAXIS PROTEIN II,MPP-II; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NATRONOMONAS PHARAONIS; SOURCE 3 ORGANISM_COMMON: NATRONOBACTERIUM PHARAONIS; SOURCE 4 ORGANISM_TAXID: 2257; SOURCE 5 GENE: SOP2, SOPII; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: NATRONOMONAS PHARAONIS; SOURCE 10 ORGANISM_COMMON: NATRONOBACTERIUM PHARAONIS; SOURCE 11 ORGANISM_TAXID: 2257; SOURCE 12 GENE: HTR2, HTRII; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SENSORY RHODOPSIN II, TRANSDUCER, MEMBRANE PROTEIN COMPLEX, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ISHCHENKO,E.ROUND,V.BORSHCHEVSKIY,S.GRUDININ,I.GUSHCHIN,J.KLARE, AUTHOR 2 A.REMEEVA,V.POLOVINKIN,P.UTROBIN,T.BALANDIN,M.ENGELHARD,G.BUELDT, AUTHOR 3 V.GORDELIY REVDAT 2 10-JAN-24 5JJJ 1 REMARK REVDAT 1 15-FEB-17 5JJJ 0 JRNL AUTH A.ISHCHENKO,E.ROUND,V.BORSHCHEVSKIY,S.GRUDININ,I.GUSHCHIN, JRNL AUTH 2 J.P.KLARE,A.REMEEVA,V.POLOVINKIN,P.UTROBIN,T.BALANDIN, JRNL AUTH 3 M.ENGELHARD,G.BULDT,V.GORDELIY JRNL TITL NEW INSIGHTS ON SIGNAL PROPAGATION BY SENSORY RHODOPSIN JRNL TITL 2 II/TRANSDUCER COMPLEX. JRNL REF SCI REP V. 7 41811 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28165484 JRNL DOI 10.1038/SREP41811 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 72.5 REMARK 3 NUMBER OF REFLECTIONS : 20997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.9955 - 3.9670 0.77 2619 161 0.1522 0.1834 REMARK 3 2 3.9670 - 3.4661 0.71 2441 124 0.1646 0.2445 REMARK 3 3 3.4661 - 3.1494 0.70 2379 127 0.1649 0.2406 REMARK 3 4 3.1494 - 2.9238 0.70 2443 124 0.1628 0.2552 REMARK 3 5 2.9238 - 2.7515 0.70 2386 124 0.1709 0.2020 REMARK 3 6 2.7515 - 2.6138 0.69 2398 128 0.1799 0.2702 REMARK 3 7 2.6138 - 2.5000 0.69 2345 137 0.2156 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2202 REMARK 3 ANGLE : 1.292 2975 REMARK 3 CHIRALITY : 0.061 361 REMARK 3 PLANARITY : 0.004 345 REMARK 3 DIHEDRAL : 13.624 798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4133 18.4582 0.3023 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.4160 REMARK 3 T33: 0.4782 T12: -0.0190 REMARK 3 T13: 0.0749 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.9869 L22: 2.6743 REMARK 3 L33: 4.4504 L12: -0.8006 REMARK 3 L13: 1.3968 L23: 0.3491 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: 0.1440 S13: -0.3462 REMARK 3 S21: 0.1682 S22: 0.1042 S23: 0.1491 REMARK 3 S31: 0.3489 S32: 0.0348 S33: -0.1238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1366 31.8890 2.5127 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.5636 REMARK 3 T33: 0.3615 T12: -0.0080 REMARK 3 T13: -0.0298 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.4093 L22: 1.3423 REMARK 3 L33: 3.1975 L12: -0.2124 REMARK 3 L13: -1.9875 L23: 0.6495 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.0556 S13: 0.1022 REMARK 3 S21: 0.1233 S22: 0.0938 S23: 0.0404 REMARK 3 S31: -0.0437 S32: 0.3318 S33: -0.0068 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6365 20.0657 -10.1197 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.8365 REMARK 3 T33: 0.4727 T12: 0.0993 REMARK 3 T13: 0.0429 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 2.8267 L22: 4.4057 REMARK 3 L33: 2.1796 L12: -0.5340 REMARK 3 L13: 1.1062 L23: -2.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.1176 S12: -0.4056 S13: -0.0834 REMARK 3 S21: 0.6299 S22: 0.5094 S23: 0.3680 REMARK 3 S31: 0.0875 S32: 0.5263 S33: -0.3768 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3296 29.1341 -10.5311 REMARK 3 T TENSOR REMARK 3 T11: 0.3042 T22: 0.7826 REMARK 3 T33: 0.3221 T12: -0.0099 REMARK 3 T13: 0.0085 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 2.5710 L22: 4.1558 REMARK 3 L33: 7.2966 L12: 0.2583 REMARK 3 L13: -3.9318 L23: -0.9811 REMARK 3 S TENSOR REMARK 3 S11: 0.3095 S12: -0.5459 S13: -0.1818 REMARK 3 S21: 0.2763 S22: 0.3599 S23: 0.1445 REMARK 3 S31: -1.0129 S32: -0.8692 S33: -0.6741 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20997 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1HS2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NA/K PHOSPHATE PH 5.6, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.69367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.38733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.69367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.38733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -33.15500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 57.42614 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 2 REMARK 465 LEU A 219 REMARK 465 ARG A 220 REMARK 465 ALA A 221 REMARK 465 GLU A 222 REMARK 465 HIS A 223 REMARK 465 GLY A 224 REMARK 465 GLU A 225 REMARK 465 SER A 226 REMARK 465 LEU A 227 REMARK 465 ALA A 228 REMARK 465 GLY A 229 REMARK 465 VAL A 230 REMARK 465 ASP A 231 REMARK 465 THR A 232 REMARK 465 ASP A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 ALA A 236 REMARK 465 VAL A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 SER A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 ALA B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 ARG B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 VAL B 14 REMARK 465 ARG B 15 REMARK 465 HIS B 16 REMARK 465 SER B 17 REMARK 465 TYR B 18 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 LYS B 21 REMARK 465 MET B 22 REMARK 465 GLY B 83 REMARK 465 GLY B 84 REMARK 465 ASP B 85 REMARK 465 THR B 86 REMARK 465 ALA B 87 REMARK 465 ALA B 88 REMARK 465 SER B 89 REMARK 465 LEU B 90 REMARK 465 SER B 91 REMARK 465 THR B 92 REMARK 465 LEU B 93 REMARK 465 ALA B 94 REMARK 465 ALA B 95 REMARK 465 LYS B 96 REMARK 465 ALA B 97 REMARK 465 SER B 98 REMARK 465 ARG B 99 REMARK 465 MET B 100 REMARK 465 GLY B 101 REMARK 465 ASP B 102 REMARK 465 GLY B 103 REMARK 465 ASP B 104 REMARK 465 LEU B 105 REMARK 465 ASP B 106 REMARK 465 VAL B 107 REMARK 465 GLU B 108 REMARK 465 LEU B 109 REMARK 465 GLU B 110 REMARK 465 THR B 111 REMARK 465 ARG B 112 REMARK 465 ARG B 113 REMARK 465 GLU B 114 REMARK 465 ASP B 115 REMARK 465 GLU B 116 REMARK 465 ILE B 117 REMARK 465 GLY B 118 REMARK 465 ASP B 119 REMARK 465 LEU B 120 REMARK 465 TYR B 121 REMARK 465 ALA B 122 REMARK 465 ALA B 123 REMARK 465 PHE B 124 REMARK 465 ASP B 125 REMARK 465 GLU B 126 REMARK 465 MET B 127 REMARK 465 ARG B 128 REMARK 465 GLN B 129 REMARK 465 SER B 130 REMARK 465 VAL B 131 REMARK 465 ARG B 132 REMARK 465 THR B 133 REMARK 465 SER B 134 REMARK 465 LEU B 135 REMARK 465 GLU B 136 REMARK 465 ASP B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 64 -117.27 42.74 REMARK 500 ALA A 217 -71.05 -79.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 309 DBREF 5JJJ A 2 239 UNP P42196 BACS2_NATPH 2 239 DBREF 5JJJ B 5 137 UNP P42259 HTR2_NATPH 5 137 SEQADV 5JJJ GLU A 240 UNP P42196 EXPRESSION TAG SEQADV 5JJJ ASN A 241 UNP P42196 EXPRESSION TAG SEQADV 5JJJ SER A 242 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 243 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 244 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 245 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 246 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 247 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 248 UNP P42196 EXPRESSION TAG SEQADV 5JJJ HIS A 249 UNP P42196 EXPRESSION TAG SEQADV 5JJJ ALA B 4 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 138 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 139 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 140 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 141 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 142 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 143 UNP P42259 EXPRESSION TAG SEQADV 5JJJ HIS B 144 UNP P42259 EXPRESSION TAG SEQRES 1 A 248 VAL GLY LEU THR THR LEU PHE TRP LEU GLY ALA ILE GLY SEQRES 2 A 248 MET LEU VAL GLY THR LEU ALA PHE ALA TRP ALA GLY ARG SEQRES 3 A 248 ASP ALA GLY SER GLY GLU ARG ARG TYR TYR VAL THR LEU SEQRES 4 A 248 VAL GLY ILE SER GLY ILE ALA ALA VAL ALA TYR VAL VAL SEQRES 5 A 248 MET ALA LEU GLY VAL GLY TRP VAL PRO VAL ALA GLU ARG SEQRES 6 A 248 THR VAL PHE ALA PRO ARG TYR ILE ASP TRP ILE LEU THR SEQRES 7 A 248 THR PRO LEU ILE VAL TYR PHE LEU GLY LEU LEU ALA GLY SEQRES 8 A 248 LEU ASP SER ARG GLU PHE GLY ILE VAL ILE THR LEU ASN SEQRES 9 A 248 THR VAL VAL MET LEU ALA GLY PHE ALA GLY ALA MET VAL SEQRES 10 A 248 PRO GLY ILE GLU ARG TYR ALA LEU PHE GLY MET GLY ALA SEQRES 11 A 248 VAL ALA PHE LEU GLY LEU VAL TYR TYR LEU VAL GLY PRO SEQRES 12 A 248 MET THR GLU SER ALA SER GLN ARG SER SER GLY ILE LYS SEQRES 13 A 248 SER LEU TYR VAL ARG LEU ARG ASN LEU THR VAL ILE LEU SEQRES 14 A 248 TRP ALA ILE TYR PRO PHE ILE TRP LEU LEU GLY PRO PRO SEQRES 15 A 248 GLY VAL ALA LEU LEU THR PRO THR VAL ASP VAL ALA LEU SEQRES 16 A 248 ILE VAL TYR LEU ASP LEU VAL THR LYS VAL GLY PHE GLY SEQRES 17 A 248 PHE ILE ALA LEU ASP ALA ALA ALA THR LEU ARG ALA GLU SEQRES 18 A 248 HIS GLY GLU SER LEU ALA GLY VAL ASP THR ASP ALA PRO SEQRES 19 A 248 ALA VAL ALA ASP GLU ASN SER HIS HIS HIS HIS HIS HIS SEQRES 20 A 248 HIS SEQRES 1 B 141 ALA VAL SER ARG LEU LEU LEU PRO SER ARG VAL ARG HIS SEQRES 2 B 141 SER TYR THR GLY LYS MET GLY ALA VAL PHE ILE PHE VAL SEQRES 3 B 141 GLY ALA LEU THR VAL LEU PHE GLY ALA ILE ALA TYR GLY SEQRES 4 B 141 GLU VAL THR ALA ALA ALA ALA THR GLY ASP ALA ALA ALA SEQRES 5 B 141 VAL GLN GLU ALA ALA VAL SER ALA ILE LEU GLY LEU ILE SEQRES 6 B 141 ILE LEU LEU GLY ILE ASN LEU GLY LEU VAL ALA ALA THR SEQRES 7 B 141 LEU GLY GLY ASP THR ALA ALA SER LEU SER THR LEU ALA SEQRES 8 B 141 ALA LYS ALA SER ARG MET GLY ASP GLY ASP LEU ASP VAL SEQRES 9 B 141 GLU LEU GLU THR ARG ARG GLU ASP GLU ILE GLY ASP LEU SEQRES 10 B 141 TYR ALA ALA PHE ASP GLU MET ARG GLN SER VAL ARG THR SEQRES 11 B 141 SER LEU GLU ASP HIS HIS HIS HIS HIS HIS HIS HET RET A 301 20 HET LFA A 302 10 HET LFA A 303 7 HET LFA A 304 10 HET LFA A 305 16 HET LFA A 306 16 HET LFA A 307 16 HET LFA A 308 5 HET LFA A 309 10 HETNAM RET RETINAL HETNAM LFA EICOSANE HETSYN LFA LIPID FRAGMENT FORMUL 3 RET C20 H28 O FORMUL 4 LFA 8(C20 H42) FORMUL 12 HOH *26(H2 O) HELIX 1 AA1 GLY A 3 ARG A 27 1 25 HELIX 2 AA2 GLU A 33 LEU A 56 1 24 HELIX 3 AA3 ALA A 70 GLY A 92 1 23 HELIX 4 AA4 ASP A 94 MET A 117 1 24 HELIX 5 AA5 GLU A 122 GLY A 143 1 22 HELIX 6 AA6 GLY A 143 GLN A 151 1 9 HELIX 7 AA7 SER A 153 ALA A 172 1 20 HELIX 8 AA8 ILE A 173 GLY A 181 1 9 HELIX 9 AA9 THR A 189 THR A 218 1 30 HELIX 10 AB1 ALA B 24 ALA B 49 1 26 HELIX 11 AB2 ASP B 52 LEU B 82 1 31 SHEET 1 AA1 2 TRP A 60 VAL A 63 0 SHEET 2 AA1 2 ARG A 66 PHE A 69 -1 O ARG A 66 N VAL A 63 LINK NZ LYS A 205 C15 RET A 301 1555 1555 1.47 SITE 1 AC1 14 TRP A 76 THR A 80 VAL A 108 MET A 109 SITE 2 AC1 14 GLY A 112 PHE A 127 PHE A 134 TRP A 171 SITE 3 AC1 14 TYR A 174 PRO A 175 TRP A 178 ASP A 201 SITE 4 AC1 14 THR A 204 LYS A 205 SITE 1 AC2 2 LEU A 126 MET A 129 SITE 1 AC3 1 TYR A 124 SITE 1 AC4 2 GLY A 59 ILE A 74 SITE 1 AC5 1 LEU A 135 SITE 1 AC6 1 VAL A 142 SITE 1 AC7 2 VAL A 38 ARG A 96 CRYST1 66.310 66.310 170.081 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015081 0.008707 0.000000 0.00000 SCALE2 0.000000 0.017414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005880 0.00000