HEADER HYDROLASE 25-APR-16 5JJT TITLE CRYSTAL STRUCTURE OF A TYPE 5 SERINE/THREONINE PROTEIN PHOSPHATASE TITLE 2 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 5-483 OF ISOFORM 2; COMPND 5 SYNONYM: TYPE 5 SERINE/THREONINE PROTEIN PHOSPHATASE; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PAPP5, PP5, AT2G42810, F7D19.19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.LI,H.PU REVDAT 2 08-NOV-23 5JJT 1 LINK REVDAT 1 26-APR-17 5JJT 0 JRNL AUTH H.M.LI,H.PU JRNL TITL CRYSTAL STRUCTURE OF A TYPE 5 SERINE/THREONINE PROTEIN JRNL TITL 2 PHOSPHATASE FROM ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 54450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8077 - 5.7049 0.97 2693 147 0.1637 0.1972 REMARK 3 2 5.7049 - 4.5294 0.97 2656 162 0.1557 0.1724 REMARK 3 3 4.5294 - 3.9573 0.98 2639 149 0.1505 0.1832 REMARK 3 4 3.9573 - 3.5956 0.97 2677 136 0.1704 0.1874 REMARK 3 5 3.5956 - 3.3380 0.97 2640 146 0.1777 0.2358 REMARK 3 6 3.3380 - 3.1412 0.96 2611 143 0.1869 0.2536 REMARK 3 7 3.1412 - 2.9839 0.96 2575 145 0.1938 0.2347 REMARK 3 8 2.9839 - 2.8541 0.96 2590 134 0.2002 0.2225 REMARK 3 9 2.8541 - 2.7442 0.96 2626 124 0.2031 0.2654 REMARK 3 10 2.7442 - 2.6495 0.96 2574 161 0.2113 0.2775 REMARK 3 11 2.6495 - 2.5667 0.96 2585 142 0.2059 0.2881 REMARK 3 12 2.5667 - 2.4933 0.96 2616 133 0.2110 0.2753 REMARK 3 13 2.4933 - 2.4277 0.96 2586 148 0.2129 0.2649 REMARK 3 14 2.4277 - 2.3685 0.96 2599 140 0.2162 0.2768 REMARK 3 15 2.3685 - 2.3146 0.96 2602 119 0.2129 0.2606 REMARK 3 16 2.3146 - 2.2654 0.95 2593 129 0.2123 0.2409 REMARK 3 17 2.2654 - 2.2200 0.94 2554 129 0.2215 0.3133 REMARK 3 18 2.2200 - 2.1781 0.94 2545 138 0.2113 0.2846 REMARK 3 19 2.1781 - 2.1392 0.93 2512 118 0.2242 0.3020 REMARK 3 20 2.1392 - 2.1030 0.81 2221 113 0.2159 0.2950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7719 REMARK 3 ANGLE : 0.705 10447 REMARK 3 CHIRALITY : 0.051 1129 REMARK 3 PLANARITY : 0.003 1367 REMARK 3 DIHEDRAL : 11.726 2865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55086 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WAO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.2, 22.5% PEG 3350, 20% REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.35250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 114 REMARK 465 PRO A 115 REMARK 465 ASP A 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 GLN A 402 CG CD OE1 NE2 REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 470 GLU B 311 CG CD OE1 OE2 REMARK 470 GLN B 402 CG CD OE1 NE2 REMARK 470 LYS B 456 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 413 O HOH A 601 2.02 REMARK 500 N TYR B 49 O HOH B 601 2.15 REMARK 500 O HOH B 890 O HOH B 906 2.16 REMARK 500 O GLU A 311 O HOH A 602 2.17 REMARK 500 O HOH A 853 O HOH A 884 2.19 REMARK 500 O HOH A 916 O HOH A 976 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 34.64 -89.06 REMARK 500 HIS A 27 13.32 57.35 REMARK 500 ASP A 260 152.98 74.68 REMARK 500 ARG A 261 -64.40 69.67 REMARK 500 GLU A 291 53.00 -100.75 REMARK 500 LEU A 309 -117.62 -123.67 REMARK 500 SER A 412 -119.57 -130.41 REMARK 500 HIS A 413 -28.86 73.32 REMARK 500 GLN A 440 -23.13 -151.33 REMARK 500 ASN B 43 85.43 -160.67 REMARK 500 ASP B 260 155.45 76.18 REMARK 500 ARG B 261 -63.19 66.82 REMARK 500 LEU B 309 -110.53 -120.01 REMARK 500 LEU B 341 -163.71 -103.72 REMARK 500 SER B 412 -115.89 -134.79 REMARK 500 HIS B 413 -30.09 72.38 REMARK 500 GLN B 440 -15.09 -148.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1009 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1011 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1012 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 958 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 228 OD2 REMARK 620 2 HIS A 230 NE2 97.7 REMARK 620 3 ASP A 257 OD2 92.6 77.4 REMARK 620 4 HOH A 601 O 103.1 154.3 116.2 REMARK 620 5 HOH A 748 O 97.6 87.5 162.8 74.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 ASN A 289 OD1 76.9 REMARK 620 3 HIS A 338 NE2 82.2 83.8 REMARK 620 4 HIS A 413 ND1 176.1 100.2 94.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 228 OD2 REMARK 620 2 HIS B 230 NE2 90.8 REMARK 620 3 ASP B 257 OD2 88.4 72.7 REMARK 620 4 HOH B 704 O 96.9 80.2 152.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 257 OD2 REMARK 620 2 ASN B 289 OD1 80.2 REMARK 620 3 HIS B 338 NE2 82.1 87.0 REMARK 620 4 HIS B 413 ND1 177.2 100.4 95.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 503 DBREF 5JJT A 5 483 UNP Q84XU2 PPP5_ARATH 5 483 DBREF 5JJT B 5 483 UNP Q84XU2 PPP5_ARATH 5 483 SEQRES 1 A 479 ASN GLU ASN SER ASP VAL SER ARG ALA GLU GLU PHE LYS SEQRES 2 A 479 SER GLN ALA ASN GLU ALA PHE LYS GLY HIS LYS TYR SER SEQRES 3 A 479 SER ALA ILE ASP LEU TYR THR LYS ALA ILE GLU LEU ASN SEQRES 4 A 479 SER ASN ASN ALA VAL TYR TRP ALA ASN ARG ALA PHE ALA SEQRES 5 A 479 HIS THR LYS LEU GLU GLU TYR GLY SER ALA ILE GLN ASP SEQRES 6 A 479 ALA SER LYS ALA ILE GLU VAL ASP SER ARG TYR SER LYS SEQRES 7 A 479 GLY TYR TYR ARG ARG GLY ALA ALA TYR LEU ALA MET GLY SEQRES 8 A 479 LYS PHE LYS ASP ALA LEU LYS ASP PHE GLN GLN VAL LYS SEQRES 9 A 479 ARG LEU SER PRO ASN ASP PRO ASP ALA THR ARG LYS LEU SEQRES 10 A 479 LYS GLU CYS GLU LYS ALA VAL MET LYS LEU LYS PHE GLU SEQRES 11 A 479 GLU ALA ILE SER VAL PRO VAL SER GLU ARG ARG SER VAL SEQRES 12 A 479 ALA GLU SER ILE ASP PHE HIS THR ILE GLU VAL GLU PRO SEQRES 13 A 479 GLN TYR SER GLY ALA ARG ILE GLU GLY GLU GLU VAL THR SEQRES 14 A 479 LEU ASP PHE VAL LYS THR MET MET GLU ASP PHE LYS ASN SEQRES 15 A 479 GLN LYS THR LEU HIS LYS ARG TYR ALA TYR GLN ILE VAL SEQRES 16 A 479 LEU GLN THR ARG GLN ILE LEU LEU ALA LEU PRO SER LEU SEQRES 17 A 479 VAL ASP ILE SER VAL PRO HIS GLY LYS HIS ILE THR VAL SEQRES 18 A 479 CYS GLY ASP VAL HIS GLY GLN PHE TYR ASP LEU LEU ASN SEQRES 19 A 479 ILE PHE GLU LEU ASN GLY LEU PRO SER GLU GLU ASN PRO SEQRES 20 A 479 TYR LEU PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SEQRES 21 A 479 SER VAL GLU ILE ILE LEU THR LEU PHE ALA PHE LYS CYS SEQRES 22 A 479 MET CYS PRO SER SER ILE TYR LEU ALA ARG GLY ASN HIS SEQRES 23 A 479 GLU SER LYS SER MET ASN LYS ILE TYR GLY PHE GLU GLY SEQRES 24 A 479 GLU VAL ARG SER LYS LEU SER GLU LYS PHE VAL ASP LEU SEQRES 25 A 479 PHE ALA GLU VAL PHE CYS TYR LEU PRO LEU ALA HIS VAL SEQRES 26 A 479 ILE ASN GLY LYS VAL PHE VAL VAL HIS GLY GLY LEU PHE SEQRES 27 A 479 SER VAL ASP GLY VAL LYS LEU SER ASP ILE ARG ALA ILE SEQRES 28 A 479 ASP ARG PHE CYS GLU PRO PRO GLU GLU GLY LEU MET CYS SEQRES 29 A 479 GLU LEU LEU TRP SER ASP PRO GLN PRO LEU PRO GLY ARG SEQRES 30 A 479 GLY PRO SER LYS ARG GLY VAL GLY LEU SER PHE GLY GLY SEQRES 31 A 479 ASP VAL THR LYS ARG PHE LEU GLN ASP ASN ASN LEU ASP SEQRES 32 A 479 LEU LEU VAL ARG SER HIS GLU VAL LYS ASP GLU GLY TYR SEQRES 33 A 479 GLU VAL GLU HIS ASP GLY LYS LEU ILE THR VAL PHE SER SEQRES 34 A 479 ALA PRO ASN TYR CYS ASP GLN MET GLY ASN LYS GLY ALA SEQRES 35 A 479 PHE ILE ARG PHE GLU ALA PRO ASP MET LYS PRO ASN ILE SEQRES 36 A 479 VAL THR PHE SER ALA VAL PRO HIS PRO ASP VAL LYS PRO SEQRES 37 A 479 MET ALA TYR ALA ASN ASN PHE LEU ARG MET PHE SEQRES 1 B 479 ASN GLU ASN SER ASP VAL SER ARG ALA GLU GLU PHE LYS SEQRES 2 B 479 SER GLN ALA ASN GLU ALA PHE LYS GLY HIS LYS TYR SER SEQRES 3 B 479 SER ALA ILE ASP LEU TYR THR LYS ALA ILE GLU LEU ASN SEQRES 4 B 479 SER ASN ASN ALA VAL TYR TRP ALA ASN ARG ALA PHE ALA SEQRES 5 B 479 HIS THR LYS LEU GLU GLU TYR GLY SER ALA ILE GLN ASP SEQRES 6 B 479 ALA SER LYS ALA ILE GLU VAL ASP SER ARG TYR SER LYS SEQRES 7 B 479 GLY TYR TYR ARG ARG GLY ALA ALA TYR LEU ALA MET GLY SEQRES 8 B 479 LYS PHE LYS ASP ALA LEU LYS ASP PHE GLN GLN VAL LYS SEQRES 9 B 479 ARG LEU SER PRO ASN ASP PRO ASP ALA THR ARG LYS LEU SEQRES 10 B 479 LYS GLU CYS GLU LYS ALA VAL MET LYS LEU LYS PHE GLU SEQRES 11 B 479 GLU ALA ILE SER VAL PRO VAL SER GLU ARG ARG SER VAL SEQRES 12 B 479 ALA GLU SER ILE ASP PHE HIS THR ILE GLU VAL GLU PRO SEQRES 13 B 479 GLN TYR SER GLY ALA ARG ILE GLU GLY GLU GLU VAL THR SEQRES 14 B 479 LEU ASP PHE VAL LYS THR MET MET GLU ASP PHE LYS ASN SEQRES 15 B 479 GLN LYS THR LEU HIS LYS ARG TYR ALA TYR GLN ILE VAL SEQRES 16 B 479 LEU GLN THR ARG GLN ILE LEU LEU ALA LEU PRO SER LEU SEQRES 17 B 479 VAL ASP ILE SER VAL PRO HIS GLY LYS HIS ILE THR VAL SEQRES 18 B 479 CYS GLY ASP VAL HIS GLY GLN PHE TYR ASP LEU LEU ASN SEQRES 19 B 479 ILE PHE GLU LEU ASN GLY LEU PRO SER GLU GLU ASN PRO SEQRES 20 B 479 TYR LEU PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SEQRES 21 B 479 SER VAL GLU ILE ILE LEU THR LEU PHE ALA PHE LYS CYS SEQRES 22 B 479 MET CYS PRO SER SER ILE TYR LEU ALA ARG GLY ASN HIS SEQRES 23 B 479 GLU SER LYS SER MET ASN LYS ILE TYR GLY PHE GLU GLY SEQRES 24 B 479 GLU VAL ARG SER LYS LEU SER GLU LYS PHE VAL ASP LEU SEQRES 25 B 479 PHE ALA GLU VAL PHE CYS TYR LEU PRO LEU ALA HIS VAL SEQRES 26 B 479 ILE ASN GLY LYS VAL PHE VAL VAL HIS GLY GLY LEU PHE SEQRES 27 B 479 SER VAL ASP GLY VAL LYS LEU SER ASP ILE ARG ALA ILE SEQRES 28 B 479 ASP ARG PHE CYS GLU PRO PRO GLU GLU GLY LEU MET CYS SEQRES 29 B 479 GLU LEU LEU TRP SER ASP PRO GLN PRO LEU PRO GLY ARG SEQRES 30 B 479 GLY PRO SER LYS ARG GLY VAL GLY LEU SER PHE GLY GLY SEQRES 31 B 479 ASP VAL THR LYS ARG PHE LEU GLN ASP ASN ASN LEU ASP SEQRES 32 B 479 LEU LEU VAL ARG SER HIS GLU VAL LYS ASP GLU GLY TYR SEQRES 33 B 479 GLU VAL GLU HIS ASP GLY LYS LEU ILE THR VAL PHE SER SEQRES 34 B 479 ALA PRO ASN TYR CYS ASP GLN MET GLY ASN LYS GLY ALA SEQRES 35 B 479 PHE ILE ARG PHE GLU ALA PRO ASP MET LYS PRO ASN ILE SEQRES 36 B 479 VAL THR PHE SER ALA VAL PRO HIS PRO ASP VAL LYS PRO SEQRES 37 B 479 MET ALA TYR ALA ASN ASN PHE LEU ARG MET PHE HET NI A 501 1 HET NI A 502 1 HET NI A 503 1 HET NI B 501 1 HET NI B 502 1 HET NI B 503 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 6(NI 2+) FORMUL 9 HOH *770(H2 O) HELIX 1 AA1 SER A 11 GLY A 26 1 16 HELIX 2 AA2 LYS A 28 ASN A 43 1 16 HELIX 3 AA3 ASN A 46 LEU A 60 1 15 HELIX 4 AA4 GLU A 62 ASP A 77 1 16 HELIX 5 AA5 TYR A 80 MET A 94 1 15 HELIX 6 AA6 LYS A 96 SER A 111 1 16 HELIX 7 AA7 THR A 118 ILE A 137 1 20 HELIX 8 AA8 PRO A 140 ARG A 144 5 5 HELIX 9 AA9 SER A 146 SER A 150 5 5 HELIX 10 AB1 ASP A 152 ILE A 156 5 5 HELIX 11 AB2 THR A 173 ASN A 186 1 14 HELIX 12 AB3 HIS A 191 ALA A 208 1 18 HELIX 13 AB4 GLN A 232 GLY A 244 1 13 HELIX 14 AB5 PHE A 264 CYS A 279 1 16 HELIX 15 AB6 SER A 292 GLY A 300 1 9 HELIX 16 AB7 GLY A 300 LEU A 309 1 10 HELIX 17 AB8 SER A 310 CYS A 322 1 13 HELIX 18 AB9 LYS A 348 ALA A 354 1 7 HELIX 19 AC1 GLY A 365 SER A 373 1 9 HELIX 20 AC2 GLY A 393 ASN A 404 1 12 HELIX 21 AC3 ASN A 436 GLN A 440 5 5 HELIX 22 AC4 ASN A 477 MET A 482 1 6 HELIX 23 AC5 ASP B 9 GLY B 26 1 18 HELIX 24 AC6 LYS B 28 ASN B 43 1 16 HELIX 25 AC7 ASN B 46 LEU B 60 1 15 HELIX 26 AC8 GLU B 62 ASP B 77 1 16 HELIX 27 AC9 TYR B 80 MET B 94 1 15 HELIX 28 AD1 LYS B 96 SER B 111 1 16 HELIX 29 AD2 ASP B 114 ILE B 137 1 24 HELIX 30 AD3 PRO B 140 ARG B 144 5 5 HELIX 31 AD4 SER B 146 SER B 150 5 5 HELIX 32 AD5 ASP B 152 ILE B 156 5 5 HELIX 33 AD6 THR B 173 ASN B 186 1 14 HELIX 34 AD7 HIS B 191 ALA B 208 1 18 HELIX 35 AD8 GLN B 232 GLY B 244 1 13 HELIX 36 AD9 PHE B 264 CYS B 279 1 16 HELIX 37 AE1 SER B 292 GLY B 300 1 9 HELIX 38 AE2 GLY B 300 LEU B 309 1 10 HELIX 39 AE3 SER B 310 TYR B 323 1 14 HELIX 40 AE4 LYS B 348 ALA B 354 1 7 HELIX 41 AE5 GLY B 365 SER B 373 1 9 HELIX 42 AE6 GLY B 393 ASN B 404 1 12 HELIX 43 AE7 ASN B 436 GLN B 440 5 5 HELIX 44 AE8 ASN B 477 MET B 482 1 6 SHEET 1 AA1 6 LEU A 212 ILE A 215 0 SHEET 2 AA1 6 ALA A 327 ILE A 330 1 O VAL A 329 N ILE A 215 SHEET 3 AA1 6 VAL A 334 VAL A 337 -1 O VAL A 336 N HIS A 328 SHEET 4 AA1 6 LEU A 408 ARG A 411 1 O VAL A 410 N PHE A 335 SHEET 5 AA1 6 LEU A 428 VAL A 431 1 O VAL A 431 N ARG A 411 SHEET 6 AA1 6 TYR A 420 GLU A 423 -1 N GLU A 423 O LEU A 428 SHEET 1 AA2 5 ILE A 283 ALA A 286 0 SHEET 2 AA2 5 TYR A 252 ASN A 255 1 N TYR A 252 O TYR A 284 SHEET 3 AA2 5 HIS A 222 CYS A 226 1 N CYS A 226 O LEU A 253 SHEET 4 AA2 5 GLY A 445 GLU A 451 -1 O ILE A 448 N VAL A 225 SHEET 5 AA2 5 PRO A 457 PHE A 462 -1 O PHE A 462 N GLY A 445 SHEET 1 AA3 3 ASP A 374 PRO A 375 0 SHEET 2 AA3 3 LEU A 390 PHE A 392 1 O PHE A 392 N ASP A 374 SHEET 3 AA3 3 ARG A 381 PRO A 383 -1 N GLY A 382 O SER A 391 SHEET 1 AA4 6 LEU B 212 ILE B 215 0 SHEET 2 AA4 6 ALA B 327 ILE B 330 1 O VAL B 329 N ILE B 215 SHEET 3 AA4 6 VAL B 334 VAL B 337 -1 O VAL B 336 N HIS B 328 SHEET 4 AA4 6 LEU B 408 ARG B 411 1 O VAL B 410 N PHE B 335 SHEET 5 AA4 6 LEU B 428 VAL B 431 1 O VAL B 431 N ARG B 411 SHEET 6 AA4 6 TYR B 420 GLU B 423 -1 N GLU B 423 O LEU B 428 SHEET 1 AA5 5 ILE B 283 LEU B 285 0 SHEET 2 AA5 5 TYR B 252 PHE B 254 1 N TYR B 252 O TYR B 284 SHEET 3 AA5 5 HIS B 222 CYS B 226 1 N CYS B 226 O LEU B 253 SHEET 4 AA5 5 GLY B 445 GLU B 451 -1 O ILE B 448 N VAL B 225 SHEET 5 AA5 5 LYS B 456 PHE B 462 -1 O PHE B 462 N GLY B 445 SHEET 1 AA6 3 ASP B 374 PRO B 375 0 SHEET 2 AA6 3 LEU B 390 PHE B 392 1 O LEU B 390 N ASP B 374 SHEET 3 AA6 3 ARG B 381 PRO B 383 -1 N GLY B 382 O SER B 391 LINK OD2 ASP A 228 NI NI A 502 1555 1555 2.59 LINK NE2 HIS A 230 NI NI A 502 1555 1555 2.67 LINK OD2 ASP A 257 NI NI A 501 1555 1555 2.66 LINK OD2 ASP A 257 NI NI A 502 1555 1555 2.68 LINK OD1 ASN A 289 NI NI A 501 1555 1555 2.52 LINK NE2 HIS A 338 NI NI A 501 1555 1555 2.65 LINK ND1 HIS A 413 NI NI A 501 1555 1555 2.59 LINK NI NI A 502 O HOH A 601 1555 1555 2.75 LINK NI NI A 502 O HOH A 748 1555 1555 2.71 LINK NI NI A 503 O HOH A 601 1555 1555 2.75 LINK OD2 ASP B 228 NI NI B 502 1555 1555 2.59 LINK NE2 HIS B 230 NI NI B 502 1555 1555 2.75 LINK OD2 ASP B 257 NI NI B 501 1555 1555 2.66 LINK OD2 ASP B 257 NI NI B 502 1555 1555 2.75 LINK OD1 ASN B 289 NI NI B 501 1555 1555 2.52 LINK NE2 HIS B 338 NI NI B 501 1555 1555 2.65 LINK ND1 HIS B 413 NI NI B 501 1555 1555 2.60 LINK NI NI B 502 O HOH B 704 1555 1555 2.66 CISPEP 1 ALA A 452 PRO A 453 0 4.69 CISPEP 2 ALA B 452 PRO B 453 0 2.55 SITE 1 AC1 7 ASP A 257 ASN A 289 HIS A 338 HIS A 413 SITE 2 AC1 7 NI A 502 NI A 503 HOH A 601 SITE 1 AC2 7 ASP A 228 HIS A 230 ASP A 257 NI A 501 SITE 2 AC2 7 NI A 503 HOH A 601 HOH A 748 SITE 1 AC3 7 GLU A 61 ARG A 261 ASN A 289 HIS A 290 SITE 2 AC3 7 NI A 501 NI A 502 HOH A 601 SITE 1 AC4 6 ASP B 257 ASN B 289 HIS B 338 HIS B 413 SITE 2 AC4 6 NI B 502 NI B 503 SITE 1 AC5 6 ASP B 228 HIS B 230 ASP B 257 NI B 501 SITE 2 AC5 6 NI B 503 HOH B 704 SITE 1 AC6 5 ASN B 289 HIS B 290 ARG B 386 NI B 501 SITE 2 AC6 5 NI B 502 CRYST1 51.408 102.705 95.290 90.00 95.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019452 0.000000 0.001897 0.00000 SCALE2 0.000000 0.009737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010544 0.00000