HEADER HYDROLASE/REPLICATION 26-APR-16 5JKS TITLE VACCINIA VIRUS D4 R167A MUTANT /A20(1-50) COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20; COMPND 10 CHAIN: D, C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: FRAGMENT: N-TERMINAL RESIDUES 1-50 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN COPENHAGEN); SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10249; SOURCE 5 STRAIN: COPENHAGEN; SOURCE 6 GENE: UNG, D4R; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN COPENHAGEN); SOURCE 11 ORGANISM_COMMON: VACV; SOURCE 12 ORGANISM_TAXID: 10249; SOURCE 13 STRAIN: COPENHAGEN; SOURCE 14 GENE: A20R; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA POLYMERASE PROCESSIVITY FACTOR, DNA BINDING, DNA POLYMERASE KEYWDS 2 BINDING, HYDROLASE-REPLICATION COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CONTESTO-RICHEFEU,N.TARBOURIECH,X.BRAZZOLOTTO,W.P.BURMEISTER, AUTHOR 2 C.N.PEYREFITTE,F.ISENI REVDAT 4 10-JAN-24 5JKS 1 REMARK REVDAT 3 06-SEP-17 5JKS 1 REMARK REVDAT 2 28-SEP-16 5JKS 1 JRNL REVDAT 1 14-SEP-16 5JKS 0 JRNL AUTH C.CONTESTO-RICHEFEU,N.TARBOURIECH,X.BRAZZOLOTTO, JRNL AUTH 2 W.P.BURMEISTER,C.N.PEYREFITTE,F.ISENI JRNL TITL STRUCTURAL ANALYSIS OF POINT MUTATIONS AT THE VACCINIA VIRUS JRNL TITL 2 A20/D4 INTERFACE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 687 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27599859 JRNL DOI 10.1107/S2053230X16011778 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4461 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4190 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6068 ; 1.826 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9679 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 6.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;39.157 ;24.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 753 ;17.954 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.606 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4909 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 991 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2168 ; 4.436 ; 5.661 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2167 ; 4.435 ; 5.660 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2703 ; 6.659 ; 8.477 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2704 ; 6.657 ; 8.478 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2293 ; 5.216 ; 6.074 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2269 ; 5.086 ; 6.045 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3329 ; 8.033 ; 8.845 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4959 ;10.526 ;44.803 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4960 ;10.526 ;44.811 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 107 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 28.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4ODA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 7.8, 1.6M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.57000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.14000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.14000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLY D -1 REMARK 465 MET A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 GLY C -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B -2 CB CG CD OE1 NE2 REMARK 470 ILE B 103 CG1 CG2 CD1 REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 ARG B 185 CD NE CZ NH1 NH2 REMARK 470 ASP B 186 CB CG OD1 OD2 REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 103 CG1 CG2 CD1 REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 GLU A 129 CB CG CD OE1 OE2 REMARK 470 GLU A 171 CB CG CD OE1 OE2 REMARK 470 ARG A 185 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP A 186 CB CG OD1 OD2 REMARK 470 ARG A 187 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 59 O HOH B 401 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 404 O HOH B 404 6555 1.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 11 -34.48 77.43 REMARK 500 PHE B 79 -15.88 77.84 REMARK 500 PHE B 84 60.29 62.38 REMARK 500 LYS B 131 7.39 56.56 REMARK 500 ASP B 138 -86.86 17.07 REMARK 500 ASN B 165 32.34 -96.81 REMARK 500 GLU B 171 -75.58 -79.10 REMARK 500 MET D 1 -7.32 64.29 REMARK 500 TRP D 43 -53.82 80.85 REMARK 500 TYR A 11 -40.59 77.93 REMARK 500 PRO A 44 -179.93 -68.91 REMARK 500 PHE A 79 -11.41 68.74 REMARK 500 PHE A 84 51.30 73.29 REMARK 500 LEU A 127 111.15 -31.49 REMARK 500 LYS A 131 -0.38 75.74 REMARK 500 ASP A 138 -75.64 2.70 REMARK 500 ASN A 165 35.81 -98.26 REMARK 500 ALA A 183 54.80 -111.57 REMARK 500 ASP A 186 -16.39 92.52 REMARK 500 ARG A 187 30.84 70.54 REMARK 500 ASP A 192 119.51 -29.22 REMARK 500 MET C 1 9.86 55.38 REMARK 500 TRP C 43 -54.44 69.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 DBREF 5JKS B 1 218 UNP P20536 UNG_VACCC 1 218 DBREF 5JKS D 1 50 UNP P20995 A20_VACCC 1 50 DBREF 5JKS A 1 218 UNP P20536 UNG_VACCC 1 218 DBREF 5JKS C 1 50 UNP P20995 A20_VACCC 1 50 SEQADV 5JKS MET B -13 UNP P20536 INITIATING METHIONINE SEQADV 5JKS SER B -12 UNP P20536 EXPRESSION TAG SEQADV 5JKS SER B -11 UNP P20536 EXPRESSION TAG SEQADV 5JKS GLY B -10 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS B -9 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS B -8 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS B -7 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS B -6 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS B -5 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS B -4 UNP P20536 EXPRESSION TAG SEQADV 5JKS SER B -3 UNP P20536 EXPRESSION TAG SEQADV 5JKS GLN B -2 UNP P20536 EXPRESSION TAG SEQADV 5JKS ASP B -1 UNP P20536 EXPRESSION TAG SEQADV 5JKS PRO B 0 UNP P20536 EXPRESSION TAG SEQADV 5JKS ALA B 167 UNP P20536 ARG 167 ENGINEERED MUTATION SEQADV 5JKS GLY D -1 UNP P20995 EXPRESSION TAG SEQADV 5JKS ALA D 0 UNP P20995 EXPRESSION TAG SEQADV 5JKS MET A -13 UNP P20536 INITIATING METHIONINE SEQADV 5JKS SER A -12 UNP P20536 EXPRESSION TAG SEQADV 5JKS SER A -11 UNP P20536 EXPRESSION TAG SEQADV 5JKS GLY A -10 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS A -9 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS A -8 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS A -7 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS A -6 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS A -5 UNP P20536 EXPRESSION TAG SEQADV 5JKS HIS A -4 UNP P20536 EXPRESSION TAG SEQADV 5JKS SER A -3 UNP P20536 EXPRESSION TAG SEQADV 5JKS GLN A -2 UNP P20536 EXPRESSION TAG SEQADV 5JKS ASP A -1 UNP P20536 EXPRESSION TAG SEQADV 5JKS PRO A 0 UNP P20536 EXPRESSION TAG SEQADV 5JKS ALA A 167 UNP P20536 ARG 167 ENGINEERED MUTATION SEQADV 5JKS GLY C -1 UNP P20995 EXPRESSION TAG SEQADV 5JKS ALA C 0 UNP P20995 EXPRESSION TAG SEQRES 1 B 232 MET SER SER GLY HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 232 PRO MET ASN SER VAL THR VAL SER HIS ALA PRO TYR THR SEQRES 3 B 232 ILE THR TYR HIS ASP ASP TRP GLU PRO VAL MET SER GLN SEQRES 4 B 232 LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP LEU LEU SEQRES 5 B 232 ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE PHE ILE SEQRES 6 B 232 GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL CYS VAL SEQRES 7 B 232 CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR GLY VAL SEQRES 8 B 232 PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER ILE LYS SEQRES 9 B 232 GLU ILE ALA SER SER ILE SER ARG LEU THR GLY VAL ILE SEQRES 10 B 232 ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP GLY VAL SEQRES 11 B 232 ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU GLY GLU SEQRES 12 B 232 THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SER LYS SEQRES 13 B 232 LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER VAL LEU SEQRES 14 B 232 TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE ALA ALA SEQRES 15 B 232 LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY TYR HIS SEQRES 16 B 232 PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP ARG SER SEQRES 17 B 232 PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP ASN LYS SEQRES 18 B 232 VAL PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 D 52 GLY ALA MET THR SER SER ALA ASP LEU THR ASN LEU LYS SEQRES 2 D 52 GLU LEU LEU SER LEU TYR LYS SER LEU ARG PHE SER ASP SEQRES 3 D 52 SER ALA ALA ILE GLU LYS TYR ASN SER LEU VAL GLU TRP SEQRES 4 D 52 GLY THR SER THR TYR TRP LYS ILE GLY VAL GLN LYS VAL SEQRES 1 A 232 MET SER SER GLY HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 232 PRO MET ASN SER VAL THR VAL SER HIS ALA PRO TYR THR SEQRES 3 A 232 ILE THR TYR HIS ASP ASP TRP GLU PRO VAL MET SER GLN SEQRES 4 A 232 LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP LEU LEU SEQRES 5 A 232 ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE PHE ILE SEQRES 6 A 232 GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL CYS VAL SEQRES 7 A 232 CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR GLY VAL SEQRES 8 A 232 PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER ILE LYS SEQRES 9 A 232 GLU ILE ALA SER SER ILE SER ARG LEU THR GLY VAL ILE SEQRES 10 A 232 ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP GLY VAL SEQRES 11 A 232 ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU GLY GLU SEQRES 12 A 232 THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SER LYS SEQRES 13 A 232 LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER VAL LEU SEQRES 14 A 232 TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE ALA ALA SEQRES 15 A 232 LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY TYR HIS SEQRES 16 A 232 PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP ARG SER SEQRES 17 A 232 PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP ASN LYS SEQRES 18 A 232 VAL PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 C 52 GLY ALA MET THR SER SER ALA ASP LEU THR ASN LEU LYS SEQRES 2 C 52 GLU LEU LEU SER LEU TYR LYS SER LEU ARG PHE SER ASP SEQRES 3 C 52 SER ALA ALA ILE GLU LYS TYR ASN SER LEU VAL GLU TRP SEQRES 4 C 52 GLY THR SER THR TYR TRP LYS ILE GLY VAL GLN LYS VAL HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 A 301 5 HET SO4 A 302 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *25(H2 O) HELIX 1 AA1 TRP B 19 ARG B 39 1 21 HELIX 2 AA2 ILE B 45 PHE B 49 5 5 HELIX 3 AA3 PHE B 50 GLN B 55 5 6 HELIX 4 AA4 LYS B 86 GLY B 101 1 16 HELIX 5 AA5 LEU B 110 ILE B 113 5 4 HELIX 6 AA6 HIS B 133 LYS B 150 1 18 HELIX 7 AA7 ASN B 165 LEU B 170 1 6 HELIX 8 AA8 ALA B 184 LYS B 191 5 8 HELIX 9 AA9 ARG B 193 LEU B 204 1 12 HELIX 10 AB1 ASN B 211 GLN B 214 5 4 HELIX 11 AB2 SER D 3 LEU D 20 1 18 HELIX 12 AB3 ASP D 24 TYR D 42 1 19 HELIX 13 AB4 TRP A 19 ASP A 40 1 22 HELIX 14 AB5 PHE A 50 GLN A 55 5 6 HELIX 15 AB6 LYS A 86 GLY A 101 1 16 HELIX 16 AB7 LEU A 110 ILE A 113 5 4 HELIX 17 AB8 HIS A 133 THR A 149 1 17 HELIX 18 AB9 ILE A 166 LEU A 170 5 5 HELIX 19 AC1 ALA A 184 ASP A 186 5 3 HELIX 20 AC2 ARG A 187 ASP A 192 1 6 HELIX 21 AC3 ARG A 193 ASP A 205 1 13 HELIX 22 AC4 ASN A 211 GLN A 214 5 4 HELIX 23 AC5 SER C 3 LEU C 20 1 18 HELIX 24 AC6 ASP C 24 TRP C 43 1 20 SHEET 1 AA1 2 MET B 1 THR B 5 0 SHEET 2 AA1 2 THR B 12 HIS B 16 -1 O ILE B 13 N VAL B 4 SHEET 1 AA2 2 THR B 42 SER B 43 0 SHEET 2 AA2 2 CYS B 125 LYS B 126 -1 O CYS B 125 N SER B 43 SHEET 1 AA3 4 VAL B 116 ASN B 120 0 SHEET 2 AA3 4 VAL B 62 GLY B 66 1 N GLY B 66 O TRP B 119 SHEET 3 AA3 4 VAL B 154 LEU B 158 1 O TYR B 156 N CYS B 63 SHEET 4 AA3 4 THR B 175 GLY B 179 1 O THR B 175 N LEU B 155 SHEET 1 AA4 2 GLY B 107 TYR B 108 0 SHEET 2 AA4 2 PHE B 216 ILE B 217 -1 O ILE B 217 N GLY B 107 SHEET 1 AA5 2 MET A 1 THR A 5 0 SHEET 2 AA5 2 THR A 12 HIS A 16 -1 O ILE A 13 N VAL A 4 SHEET 1 AA6 2 THR A 42 SER A 43 0 SHEET 2 AA6 2 CYS A 125 LYS A 126 -1 O CYS A 125 N SER A 43 SHEET 1 AA7 4 VAL A 116 ASN A 120 0 SHEET 2 AA7 4 VAL A 62 GLY A 66 1 N GLY A 66 O TRP A 119 SHEET 3 AA7 4 VAL A 154 LEU A 158 1 O TYR A 156 N CYS A 65 SHEET 4 AA7 4 THR A 175 GLY A 179 1 O THR A 175 N LEU A 155 SHEET 1 AA8 2 GLY A 107 TYR A 108 0 SHEET 2 AA8 2 PHE A 216 ILE A 217 -1 O ILE A 217 N GLY A 107 CISPEP 1 ALA B 9 PRO B 10 0 5.57 CISPEP 2 SER B 43 PRO B 44 0 -3.96 CISPEP 3 ALA A 9 PRO A 10 0 5.91 CISPEP 4 SER A 43 PRO A 44 0 -11.27 SITE 1 AC1 6 GLY B 159 LYS B 160 THR B 161 TYR B 180 SITE 2 AC1 6 HIS B 181 ALA B 184 SITE 1 AC2 5 TYR B 70 PRO B 71 SER B 88 HIS B 181 SITE 2 AC2 5 SO4 B 304 SITE 1 AC3 2 LYS B 86 LYS B 87 SITE 1 AC4 7 GLY B 66 ASP B 68 PRO B 69 TYR B 70 SITE 2 AC4 7 PHE B 79 ASN B 120 SO4 B 302 SITE 1 AC5 5 GLY A 159 LYS A 160 THR A 161 HIS A 181 SITE 2 AC5 5 ALA A 184 SITE 1 AC6 3 THR A 85 LYS A 86 LYS A 87 CRYST1 92.980 92.980 145.710 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010755 0.006209 0.000000 0.00000 SCALE2 0.000000 0.012419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006863 0.00000