HEADER TRANSFERASE 26-APR-16 5JLB TITLE CRYSTAL STRUCTURE OF SETD2 BOUND TO HISTONE H3.3 K36I PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 1434-1711; COMPND 5 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING COMPND 6 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- COMPND 7 METHYLTRANSFERASE 3A,SET DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HISTONE H3.3; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: H3 PEPTIDE, UNP RESIDUES 30-43; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS SET DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,S.YANG REVDAT 3 08-NOV-23 5JLB 1 REMARK REVDAT 2 30-AUG-17 5JLB 1 JRNL REMARK REVDAT 1 02-NOV-16 5JLB 0 JRNL AUTH S.YANG,X.ZHENG,C.LU,G.M.LI,C.D.ALLIS,H.LI JRNL TITL MOLECULAR BASIS FOR ONCOHISTONE H3 RECOGNITION BY SETD2 JRNL TITL 2 METHYLTRANSFERASE JRNL REF GENES DEV. V. 30 1611 2016 JRNL REFN ISSN 0890-9369 JRNL PMID 27474439 JRNL DOI 10.1101/GAD.284323.116 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 58391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5248 - 4.0680 1.00 2978 157 0.1588 0.2138 REMARK 3 2 4.0680 - 3.2297 1.00 2845 162 0.1480 0.1670 REMARK 3 3 3.2297 - 2.8216 1.00 2860 111 0.1661 0.1648 REMARK 3 4 2.8216 - 2.5637 1.00 2812 130 0.1739 0.2041 REMARK 3 5 2.5637 - 2.3800 1.00 2843 119 0.1763 0.2071 REMARK 3 6 2.3800 - 2.2397 1.00 2788 125 0.1699 0.1917 REMARK 3 7 2.2397 - 2.1276 1.00 2775 139 0.1623 0.1904 REMARK 3 8 2.1276 - 2.0350 1.00 2753 157 0.1597 0.1786 REMARK 3 9 2.0350 - 1.9566 1.00 2781 123 0.1575 0.1812 REMARK 3 10 1.9566 - 1.8891 1.00 2769 137 0.1605 0.1759 REMARK 3 11 1.8891 - 1.8301 1.00 2754 155 0.1590 0.1885 REMARK 3 12 1.8301 - 1.7778 1.00 2742 161 0.1611 0.2009 REMARK 3 13 1.7778 - 1.7310 1.00 2741 141 0.1666 0.1876 REMARK 3 14 1.7310 - 1.6887 1.00 2749 146 0.1647 0.1922 REMARK 3 15 1.6887 - 1.6503 1.00 2745 163 0.1659 0.1938 REMARK 3 16 1.6503 - 1.6152 1.00 2737 152 0.1760 0.1760 REMARK 3 17 1.6152 - 1.5829 1.00 2730 143 0.1829 0.1961 REMARK 3 18 1.5829 - 1.5530 1.00 2742 141 0.1989 0.1968 REMARK 3 19 1.5530 - 1.5253 1.00 2769 127 0.2049 0.2509 REMARK 3 20 1.5253 - 1.4994 0.96 2636 153 0.2343 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2187 REMARK 3 ANGLE : 0.914 2924 REMARK 3 CHIRALITY : 0.085 295 REMARK 3 PLANARITY : 0.004 382 REMARK 3 DIHEDRAL : 24.301 843 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1447 THROUGH 1485 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2886 -0.4617 4.8632 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.3294 REMARK 3 T33: 0.2272 T12: 0.0627 REMARK 3 T13: -0.0495 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6855 L22: 0.5170 REMARK 3 L33: 1.7530 L12: 0.2805 REMARK 3 L13: -0.4331 L23: -0.3923 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: -0.2625 S13: -0.1054 REMARK 3 S21: 0.2130 S22: 0.0135 S23: -0.1532 REMARK 3 S31: 0.2619 S32: 0.5200 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1486 THROUGH 1511 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2448 5.2391 23.7909 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.4388 REMARK 3 T33: 0.3828 T12: 0.0503 REMARK 3 T13: 0.0661 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 0.5108 L22: 0.2107 REMARK 3 L33: 1.1495 L12: -0.2415 REMARK 3 L13: 0.3651 L23: 0.1951 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.5209 S13: -0.1613 REMARK 3 S21: 0.1030 S22: -0.0887 S23: -0.1719 REMARK 3 S31: -0.2471 S32: -0.1213 S33: -0.0841 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1512 THROUGH 1551 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6019 4.7872 16.9402 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.2010 REMARK 3 T33: 0.1729 T12: 0.0301 REMARK 3 T13: 0.0029 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6097 L22: 0.9726 REMARK 3 L33: 0.9057 L12: 0.1934 REMARK 3 L13: 0.2101 L23: -0.2128 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.1119 S13: -0.0346 REMARK 3 S21: 0.0740 S22: 0.0039 S23: 0.0545 REMARK 3 S31: 0.0881 S32: -0.1928 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1552 THROUGH 1574 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5968 -6.5149 -2.9909 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.1606 REMARK 3 T33: 0.2119 T12: -0.0216 REMARK 3 T13: 0.0323 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.2990 L22: 0.0481 REMARK 3 L33: 0.5586 L12: -0.1448 REMARK 3 L13: 0.2049 L23: 0.0654 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: 0.1208 S13: -0.1517 REMARK 3 S21: -0.0487 S22: 0.0612 S23: 0.0699 REMARK 3 S31: 0.4876 S32: -0.1926 S33: 0.0065 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1575 THROUGH 1616 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8512 14.1609 -2.3152 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1400 REMARK 3 T33: 0.1796 T12: -0.0205 REMARK 3 T13: -0.0054 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.8587 L22: 0.9155 REMARK 3 L33: 0.9034 L12: 0.5542 REMARK 3 L13: -0.3698 L23: -0.7035 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.1438 S13: 0.0629 REMARK 3 S21: 0.1798 S22: 0.0084 S23: -0.0343 REMARK 3 S31: -0.1802 S32: 0.0939 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1617 THROUGH 1662 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0438 3.7980 0.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1372 REMARK 3 T33: 0.1639 T12: 0.0092 REMARK 3 T13: -0.0143 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.6714 L22: 0.5673 REMARK 3 L33: 1.5106 L12: -0.0708 REMARK 3 L13: -0.6671 L23: -0.5731 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.0217 S13: -0.0749 REMARK 3 S21: 0.0135 S22: 0.0450 S23: 0.0161 REMARK 3 S31: 0.0181 S32: -0.0873 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1663 THROUGH 1703 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9455 11.2549 -15.0039 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.2008 REMARK 3 T33: 0.1870 T12: 0.0104 REMARK 3 T13: -0.0136 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.9750 L22: 0.5702 REMARK 3 L33: 0.7990 L12: -0.0056 REMARK 3 L13: -0.1481 L23: 0.3830 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.2897 S13: 0.1514 REMARK 3 S21: -0.2877 S22: 0.0477 S23: 0.0149 REMARK 3 S31: -0.1891 S32: -0.1851 S33: -0.0008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7013 12.1100 -8.3557 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.2091 REMARK 3 T33: 0.1858 T12: 0.0193 REMARK 3 T13: -0.0110 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.1451 L22: 0.3993 REMARK 3 L33: 0.4291 L12: -0.1044 REMARK 3 L13: 0.2054 L23: 0.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.1278 S12: 0.2805 S13: -0.1444 REMARK 3 S21: -0.2459 S22: -0.1110 S23: 0.0323 REMARK 3 S31: -0.3329 S32: -0.2642 S33: 0.0124 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58483 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4H12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M KSCN, 0.1 M BIS-TRIS PROPANE, REMARK 280 20% PEG3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.29650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.63200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.42200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.63200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.29650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.42200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1433 REMARK 465 GLY A 1434 REMARK 465 GLU A 1435 REMARK 465 THR A 1436 REMARK 465 SER A 1437 REMARK 465 VAL A 1438 REMARK 465 PRO A 1439 REMARK 465 PRO A 1440 REMARK 465 GLY A 1441 REMARK 465 SER A 1442 REMARK 465 ALA A 1443 REMARK 465 LEU A 1444 REMARK 465 VAL A 1445 REMARK 465 GLY A 1446 REMARK 465 ASN A 1488 REMARK 465 LYS A 1489 REMARK 465 SER A 1490 REMARK 465 HIS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASP A 1493 REMARK 465 ILE A 1494 REMARK 465 LYS A 1495 REMARK 465 ARG A 1496 REMARK 465 MET A 1704 REMARK 465 LYS A 1705 REMARK 465 LYS A 1706 REMARK 465 GLU A 1707 REMARK 465 ARG A 1708 REMARK 465 SER A 1709 REMARK 465 ARG A 1710 REMARK 465 LYS A 1711 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2113 O HOH A 2167 2.14 REMARK 500 O HOH A 1917 O HOH A 2110 2.15 REMARK 500 O HOH A 2088 O HOH A 2127 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2009 O HOH A 2141 2455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1541 40.52 -108.86 REMARK 500 LYS A1559 14.96 -147.45 REMARK 500 VAL A1576 -70.67 -92.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1807 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1499 SG REMARK 620 2 CYS A1501 SG 105.6 REMARK 620 3 CYS A1516 SG 107.3 107.1 REMARK 620 4 CYS A1520 SG 117.4 107.9 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1808 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1516 SG REMARK 620 2 CYS A1529 SG 114.8 REMARK 620 3 CYS A1533 SG 98.8 119.7 REMARK 620 4 CYS A1539 SG 111.2 99.8 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1809 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1631 SG REMARK 620 2 CYS A1678 SG 114.7 REMARK 620 3 CYS A1680 SG 106.7 105.8 REMARK 620 4 CYS A1685 SG 111.0 108.0 110.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1809 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JJY RELATED DB: PDB REMARK 900 RELATED ID: 5JLE RELATED DB: PDB DBREF 5JLB A 1434 1711 UNP Q9BYW2 SETD2_HUMAN 1434 1711 DBREF 5JLB B 29 42 UNP P84243 H33_HUMAN 30 43 SEQADV 5JLB SER A 1433 UNP Q9BYW2 EXPRESSION TAG SEQADV 5JLB ILE B 36 UNP P84243 LYS 37 ENGINEERED MUTATION SEQRES 1 A 279 SER GLY GLU THR SER VAL PRO PRO GLY SER ALA LEU VAL SEQRES 2 A 279 GLY PRO SER CYS VAL MET ASP ASP PHE ARG ASP PRO GLN SEQRES 3 A 279 ARG TRP LYS GLU CYS ALA LYS GLN GLY LYS MET PRO CYS SEQRES 4 A 279 TYR PHE ASP LEU ILE GLU GLU ASN VAL TYR LEU THR GLU SEQRES 5 A 279 ARG LYS LYS ASN LYS SER HIS ARG ASP ILE LYS ARG MET SEQRES 6 A 279 GLN CYS GLU CYS THR PRO LEU SER LYS ASP GLU ARG ALA SEQRES 7 A 279 GLN GLY GLU ILE ALA CYS GLY GLU ASP CYS LEU ASN ARG SEQRES 8 A 279 LEU LEU MET ILE GLU CYS SER SER ARG CYS PRO ASN GLY SEQRES 9 A 279 ASP TYR CYS SER ASN ARG ARG PHE GLN ARG LYS GLN HIS SEQRES 10 A 279 ALA ASP VAL GLU VAL ILE LEU THR GLU LYS LYS GLY TRP SEQRES 11 A 279 GLY LEU ARG ALA ALA LYS ASP LEU PRO SER ASN THR PHE SEQRES 12 A 279 VAL LEU GLU TYR CYS GLY GLU VAL LEU ASP HIS LYS GLU SEQRES 13 A 279 PHE LYS ALA ARG VAL LYS GLU TYR ALA ARG ASN LYS ASN SEQRES 14 A 279 ILE HIS TYR TYR PHE MET ALA LEU LYS ASN ASP GLU ILE SEQRES 15 A 279 ILE ASP ALA THR GLN LYS GLY ASN CYS SER ARG PHE MET SEQRES 16 A 279 ASN HIS SER CYS GLU PRO ASN CYS GLU THR GLN LYS TRP SEQRES 17 A 279 THR VAL ASN GLY GLN LEU ARG VAL GLY PHE PHE THR THR SEQRES 18 A 279 LYS LEU VAL PRO SER GLY SER GLU LEU THR PHE ASP TYR SEQRES 19 A 279 GLN PHE GLN ARG TYR GLY LYS GLU ALA GLN LYS CYS PHE SEQRES 20 A 279 CYS GLY SER ALA ASN CYS ARG GLY TYR LEU GLY GLY GLU SEQRES 21 A 279 ASN ARG VAL SER ILE ARG ALA ALA GLY GLY LYS MET LYS SEQRES 22 A 279 LYS GLU ARG SER ARG LYS SEQRES 1 B 14 ALA PRO SER THR GLY GLY VAL ILE LYS PRO HIS ARG TYR SEQRES 2 B 14 ARG HET SAH A1801 26 HET SCN A1802 3 HET SCN A1803 3 HET SCN A1804 3 HET GOL A1805 6 HET GOL A1806 6 HET ZN A1807 1 HET ZN A1808 1 HET ZN A1809 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM SCN THIOCYANATE ION HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 SCN 3(C N S 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 ZN 3(ZN 2+) FORMUL 12 HOH *330(H2 O) HELIX 1 AA1 ASP A 1452 ARG A 1455 5 4 HELIX 2 AA2 ASP A 1456 GLN A 1466 1 11 HELIX 3 AA3 SER A 1505 GLY A 1512 1 8 HELIX 4 AA4 CYS A 1520 LEU A 1525 1 6 HELIX 5 AA5 ASN A 1535 CYS A 1539 5 5 HELIX 6 AA6 ASP A 1585 ASN A 1599 1 15 HELIX 7 AA7 ASN A 1622 MET A 1627 5 6 HELIX 8 AA8 SER A 1696 GLY A 1701 1 6 SHEET 1 AA1 5 SER A1448 VAL A1450 0 SHEET 2 AA1 5 VAL A1552 LEU A1556 -1 O VAL A1554 N CYS A1449 SHEET 3 AA1 5 TRP A1562 ALA A1566 -1 O GLY A1563 N ILE A1555 SHEET 4 AA1 5 GLU A1661 PHE A1664 -1 O LEU A1662 N LEU A1564 SHEET 5 AA1 5 ASN A1628 HIS A1629 1 N ASN A1628 O PHE A1664 SHEET 1 AA2 2 ASP A1474 LEU A1475 0 SHEET 2 AA2 2 LYS A1620 GLY A1621 1 O GLY A1621 N ASP A1474 SHEET 1 AA3 6 VAL A1480 TYR A1481 0 SHEET 2 AA3 6 GLU A1582 LEU A1584 1 O VAL A1583 N VAL A1480 SHEET 3 AA3 6 GLU A1613 ASP A1616 -1 O ILE A1614 N LEU A1584 SHEET 4 AA3 6 PHE A1606 LYS A1610 -1 N MET A1607 O ILE A1615 SHEET 5 AA3 6 GLY B 34 ILE B 36 1 O ILE B 36 N PHE A1606 SHEET 6 AA3 6 GLN A1669 ARG A1670 -1 N GLN A1669 O VAL B 35 SHEET 1 AA4 3 PHE A1575 GLU A1578 0 SHEET 2 AA4 3 GLN A1645 THR A1652 -1 O PHE A1650 N VAL A1576 SHEET 3 AA4 3 CYS A1635 VAL A1642 -1 N VAL A1642 O GLN A1645 LINK SG CYS A1499 ZN ZN A1807 1555 1555 2.30 LINK SG CYS A1501 ZN ZN A1807 1555 1555 2.41 LINK SG CYS A1516 ZN ZN A1807 1555 1555 2.38 LINK SG CYS A1516 ZN ZN A1808 1555 1555 2.38 LINK SG CYS A1520 ZN ZN A1807 1555 1555 2.28 LINK SG CYS A1529 ZN ZN A1808 1555 1555 2.40 LINK SG CYS A1533 ZN ZN A1808 1555 1555 2.23 LINK SG CYS A1539 ZN ZN A1808 1555 1555 2.31 LINK SG CYS A1631 ZN ZN A1809 1555 1555 2.41 LINK SG CYS A1678 ZN ZN A1809 1555 1555 2.30 LINK SG CYS A1680 ZN ZN A1809 1555 1555 2.38 LINK SG CYS A1685 ZN ZN A1809 1555 1555 2.27 SITE 1 AC1 18 LYS A1560 GLY A1561 TRP A1562 ILE A1602 SITE 2 AC1 18 HIS A1603 TYR A1604 TYR A1605 ARG A1625 SITE 3 AC1 18 PHE A1626 ASN A1628 HIS A1629 TYR A1666 SITE 4 AC1 18 LYS A1677 CYS A1678 PHE A1679 HOH A1935 SITE 5 AC1 18 HOH A1961 HOH A1966 SITE 1 AC2 7 HIS A1629 PHE A1668 ARG A1686 GLY A1690 SITE 2 AC2 7 GLY A1691 HOH A1994 HOH A2096 SITE 1 AC3 1 LYS A1590 SITE 1 AC4 5 THR A1637 LYS A1639 HOH A2058 HIS B 39 SITE 2 AC4 5 ARG B 40 SITE 1 AC5 6 GLU A1477 LYS A1547 LYS A1677 CYS A1678 SITE 2 AC5 6 GLY A1687 HOH A1950 SITE 1 AC6 6 ARG A1509 ASP A1537 CYS A1539 GLN A1548 SITE 2 AC6 6 HOH A1927 HOH A2112 SITE 1 AC7 4 CYS A1499 CYS A1501 CYS A1516 CYS A1520 SITE 1 AC8 4 CYS A1516 CYS A1529 CYS A1533 CYS A1539 SITE 1 AC9 4 CYS A1631 CYS A1678 CYS A1680 CYS A1685 CRYST1 60.593 76.844 77.264 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016504 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012943 0.00000