HEADER TRANSCRIPTION REGULATOR/DNA 27-APR-16 5JLX TITLE ANTPHD WITH 15BP DNA DUPLEX S-MONOTHIOATED AT CYTIDINE-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOTIC PROTEIN ANTENNAPEDIA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C7S) COMPND 8 P*AP*TP*TP*AP*GP*AP*G)-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)- COMPND 13 3'); COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ANTP, CG1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 15 ORGANISM_TAXID: 32644 KEYWDS HOMEODOMAIN, DNA-BINDING PROTEIN, COMPLEX (HOMEODOMAIN-DNA), KEYWDS 2 TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTION REGULATOR-DNA COMPLEX, KEYWDS 3 MONOTHIOLATED DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.A.WHITE,L.ZANDARASHVILI,J.IWAHARA,D.NGUYEN REVDAT 6 27-SEP-23 5JLX 1 LINK REVDAT 5 25-DEC-19 5JLX 1 DBREF REVDAT 4 20-SEP-17 5JLX 1 REMARK REVDAT 3 14-SEP-16 5JLX 1 JRNL REVDAT 2 13-JUL-16 5JLX 1 TITLE REVDAT 1 22-JUN-16 5JLX 0 JRNL AUTH D.NGUYEN,L.ZANDARASHVILI,M.A.WHITE,J.IWAHARA JRNL TITL STEREOSPECIFIC EFFECTS OF OXYGEN-TO-SULFUR SUBSTITUTION IN JRNL TITL 2 DNA PHOSPHATE ON ION PAIR DYNAMICS AND PROTEIN-DNA AFFINITY. JRNL REF CHEMBIOCHEM V. 17 1636 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27271797 JRNL DOI 10.1002/CBIC.201600265 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.7 REMARK 3 NUMBER OF REFLECTIONS : 9098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6696 - 3.9622 0.99 3733 197 0.1785 0.2206 REMARK 3 2 3.9622 - 3.1455 0.82 2950 155 0.1959 0.2570 REMARK 3 3 3.1455 - 2.7480 0.55 1960 103 0.2753 0.3788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2434 REMARK 3 ANGLE : 0.786 3526 REMARK 3 CHIRALITY : 0.042 377 REMARK 3 PLANARITY : 0.004 241 REMARK 3 DIHEDRAL : 26.539 1236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 33 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4948 14.2377 1.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.3417 T22: 0.4890 REMARK 3 T33: 0.3239 T12: 0.1361 REMARK 3 T13: 0.0326 T23: -0.1487 REMARK 3 L TENSOR REMARK 3 L11: 0.0793 L22: 0.2455 REMARK 3 L33: 0.1054 L12: 0.1070 REMARK 3 L13: 0.0156 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: -0.2524 S12: -0.2647 S13: -0.1306 REMARK 3 S21: -0.0528 S22: -0.0616 S23: -0.4342 REMARK 3 S31: 0.2151 S32: -0.0169 S33: -0.0771 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 14:17) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1839 14.4656 7.5946 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.4266 REMARK 3 T33: 0.3101 T12: 0.2273 REMARK 3 T13: -0.0478 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.0348 L22: 0.0424 REMARK 3 L33: 0.0022 L12: 0.0373 REMARK 3 L13: -0.0010 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.0217 S13: -0.1376 REMARK 3 S21: 0.0026 S22: 0.1135 S23: -0.0230 REMARK 3 S31: -0.0075 S32: -0.1128 S33: 0.0133 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 18:23) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4784 14.8043 8.1004 REMARK 3 T TENSOR REMARK 3 T11: -0.2295 T22: 0.0489 REMARK 3 T33: -0.7503 T12: 0.5156 REMARK 3 T13: -0.7353 T23: 0.5270 REMARK 3 L TENSOR REMARK 3 L11: 0.1171 L22: 0.0097 REMARK 3 L33: 0.3549 L12: 0.0212 REMARK 3 L13: 0.0717 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.0416 S13: 0.0048 REMARK 3 S21: -0.1105 S22: 0.0433 S23: 0.2185 REMARK 3 S31: 0.2001 S32: 0.0820 S33: -0.1499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 24:28) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7041 20.9937 2.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.7620 T22: 0.6677 REMARK 3 T33: 0.7980 T12: 0.2024 REMARK 3 T13: -0.2907 T23: -0.1549 REMARK 3 L TENSOR REMARK 3 L11: 0.0242 L22: 0.0160 REMARK 3 L33: 0.0123 L12: -0.0147 REMARK 3 L13: -0.0102 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.0844 S13: 0.1002 REMARK 3 S21: 0.2989 S22: -0.0775 S23: -0.0450 REMARK 3 S31: 0.3282 S32: -0.1658 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3490 29.4020 4.3797 REMARK 3 T TENSOR REMARK 3 T11: 0.3459 T22: 0.6623 REMARK 3 T33: 0.4425 T12: 0.0777 REMARK 3 T13: -0.0548 T23: -0.1112 REMARK 3 L TENSOR REMARK 3 L11: 0.0483 L22: 0.0111 REMARK 3 L33: 0.0583 L12: 0.0249 REMARK 3 L13: -0.0503 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: -0.5358 S12: -0.1331 S13: -0.0480 REMARK 3 S21: -0.4036 S22: -0.4028 S23: 0.2530 REMARK 3 S31: -0.2264 S32: -0.1055 S33: -0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 34:38) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6958 26.1925 7.6725 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.5201 REMARK 3 T33: 0.5025 T12: -0.0000 REMARK 3 T13: 0.0133 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 0.0309 L22: 0.0200 REMARK 3 L33: 0.0140 L12: 0.0086 REMARK 3 L13: 0.0202 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: -0.2344 S13: -0.0206 REMARK 3 S21: 0.0245 S22: 0.0550 S23: -0.0291 REMARK 3 S31: -0.0167 S32: 0.0728 S33: -0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 39:44) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5436 24.4027 0.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.5198 T22: 0.4830 REMARK 3 T33: 0.2870 T12: 0.1016 REMARK 3 T13: -0.0806 T23: 0.1069 REMARK 3 L TENSOR REMARK 3 L11: 0.1071 L22: 0.1297 REMARK 3 L33: 0.0055 L12: 0.1141 REMARK 3 L13: -0.0177 L23: -0.0145 REMARK 3 S TENSOR REMARK 3 S11: -0.2195 S12: 0.1762 S13: -0.1198 REMARK 3 S21: -0.1736 S22: -0.0637 S23: -0.1885 REMARK 3 S31: -0.2668 S32: -0.0204 S33: -0.0403 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 45:52) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4053 19.0640 -2.9278 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.3854 REMARK 3 T33: 0.4164 T12: 0.0268 REMARK 3 T13: -0.0410 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: -0.0006 REMARK 3 L33: 0.0112 L12: 0.0038 REMARK 3 L13: -0.0216 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.1916 S12: 0.3962 S13: 0.1119 REMARK 3 S21: -0.3588 S22: -0.2461 S23: 0.1467 REMARK 3 S31: 0.2752 S32: -0.1343 S33: 0.0004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 53:56) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9371 12.4765 -3.3529 REMARK 3 T TENSOR REMARK 3 T11: 0.5179 T22: 0.5536 REMARK 3 T33: 0.7258 T12: -0.0083 REMARK 3 T13: -0.2878 T23: -0.2131 REMARK 3 L TENSOR REMARK 3 L11: 0.1143 L22: 0.0095 REMARK 3 L33: 0.0051 L12: -0.0102 REMARK 3 L13: -0.0313 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0753 S13: 0.0947 REMARK 3 S21: -0.1101 S22: 0.0650 S23: 0.1420 REMARK 3 S31: 0.1629 S32: -0.2139 S33: 0.1515 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 57:61) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7842 7.6896 -3.0351 REMARK 3 T TENSOR REMARK 3 T11: 1.3610 T22: 0.6906 REMARK 3 T33: 1.0038 T12: -0.1807 REMARK 3 T13: -0.0134 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 0.0102 L22: 0.0066 REMARK 3 L33: 0.0074 L12: -0.0027 REMARK 3 L13: 0.0078 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.2307 S12: 0.0159 S13: 0.0089 REMARK 3 S21: 0.0812 S22: 0.0342 S23: 0.0891 REMARK 3 S31: 0.0909 S32: -0.0247 S33: 0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4683 34.6891 -11.4677 REMARK 3 T TENSOR REMARK 3 T11: 0.8299 T22: 0.6010 REMARK 3 T33: 0.7696 T12: 0.2800 REMARK 3 T13: -0.1045 T23: 0.2331 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.3152 REMARK 3 L33: 0.3079 L12: 0.0235 REMARK 3 L13: 0.0048 L23: -0.3184 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.1373 S13: 0.1834 REMARK 3 S21: 0.0166 S22: -0.2479 S23: -0.1137 REMARK 3 S31: -0.1044 S32: 0.2144 S33: -0.1170 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 6:11) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2022 15.5232 -13.7931 REMARK 3 T TENSOR REMARK 3 T11: 0.8249 T22: 0.7146 REMARK 3 T33: 0.6598 T12: 0.2632 REMARK 3 T13: -0.2900 T23: -0.1203 REMARK 3 L TENSOR REMARK 3 L11: 0.5672 L22: 0.8210 REMARK 3 L33: 0.5332 L12: 0.3722 REMARK 3 L13: -0.5381 L23: -0.1274 REMARK 3 S TENSOR REMARK 3 S11: 0.7934 S12: 0.5063 S13: -0.7285 REMARK 3 S21: 0.0129 S22: -0.3128 S23: 0.2813 REMARK 3 S31: 0.1217 S32: -0.1896 S33: 0.0791 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2394 8.6331 -10.0784 REMARK 3 T TENSOR REMARK 3 T11: 0.7025 T22: 0.7169 REMARK 3 T33: 0.5803 T12: 0.1824 REMARK 3 T13: -0.1107 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 0.0214 REMARK 3 L33: 0.0054 L12: 0.0003 REMARK 3 L13: 0.0093 L23: -0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: 0.6109 S13: -0.4756 REMARK 3 S21: -0.1140 S22: -0.0589 S23: 0.2009 REMARK 3 S31: -0.1483 S32: 0.1414 S33: 0.0005 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5851 5.7992 -8.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.7536 T22: 0.4579 REMARK 3 T33: 0.5086 T12: 0.1452 REMARK 3 T13: -0.1826 T23: -0.1095 REMARK 3 L TENSOR REMARK 3 L11: 0.6457 L22: 0.6195 REMARK 3 L33: 0.2325 L12: -0.2842 REMARK 3 L13: -0.4040 L23: 0.2962 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 0.5710 S13: -0.4445 REMARK 3 S21: 0.5922 S22: -0.3941 S23: -0.3873 REMARK 3 S31: -0.1511 S32: -0.7960 S33: -0.0406 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7452 21.4198 -17.6801 REMARK 3 T TENSOR REMARK 3 T11: 1.0585 T22: 1.0964 REMARK 3 T33: 0.7949 T12: 0.5720 REMARK 3 T13: -0.1820 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 0.0075 L22: 0.1725 REMARK 3 L33: 0.0646 L12: -0.0277 REMARK 3 L13: 0.0123 L23: -0.1097 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: 0.6703 S13: 0.2777 REMARK 3 S21: 0.1362 S22: -0.1357 S23: 0.0089 REMARK 3 S31: -0.4098 S32: 0.0712 S33: 0.0053 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN C AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7971 27.7351 -11.6482 REMARK 3 T TENSOR REMARK 3 T11: 1.1111 T22: 0.5441 REMARK 3 T33: 0.7126 T12: 0.1329 REMARK 3 T13: -0.0855 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 0.0316 L22: 0.0342 REMARK 3 L33: 0.0136 L12: 0.0377 REMARK 3 L13: -0.0108 L23: -0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.3358 S12: 0.0484 S13: 0.0725 REMARK 3 S21: -0.2966 S22: 0.0018 S23: 0.1416 REMARK 3 S31: 0.0484 S32: -0.1770 S33: 0.0003 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN D AND RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7136 30.8205 29.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.6148 T22: 0.4527 REMARK 3 T33: 0.5847 T12: -0.0088 REMARK 3 T13: -0.1734 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.0035 L22: 0.0008 REMARK 3 L33: -0.0001 L12: 0.0086 REMARK 3 L13: -0.0006 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.3702 S12: 0.2315 S13: 0.2096 REMARK 3 S21: 0.4746 S22: -0.2711 S23: -0.0447 REMARK 3 S31: -0.2847 S32: -0.0549 S33: 0.0006 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN D AND RESID 11:15) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7097 26.8931 17.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.4782 REMARK 3 T33: 0.5761 T12: 0.0876 REMARK 3 T13: -0.0035 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.0193 REMARK 3 L33: 0.0134 L12: 0.0157 REMARK 3 L13: 0.0108 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.4224 S12: 0.2121 S13: 0.0741 REMARK 3 S21: -0.1830 S22: -0.1974 S23: 0.1037 REMARK 3 S31: -0.3062 S32: 0.1314 S33: 0.0007 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN D AND RESID 16:21) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9175 17.9452 18.5551 REMARK 3 T TENSOR REMARK 3 T11: -0.0767 T22: 0.1597 REMARK 3 T33: 0.1342 T12: 0.1320 REMARK 3 T13: -0.4472 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 0.3147 L22: 0.0227 REMARK 3 L33: 0.2155 L12: -0.0366 REMARK 3 L13: -0.0007 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.1657 S13: -0.2230 REMARK 3 S21: -0.1106 S22: 0.2480 S23: 0.0175 REMARK 3 S31: 0.0641 S32: -0.2173 S33: 0.1943 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN D AND RESID 22:25) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0785 11.0571 19.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.2715 REMARK 3 T33: 0.5779 T12: -0.1056 REMARK 3 T13: 0.1867 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 0.0385 L22: 0.0884 REMARK 3 L33: 0.1036 L12: -0.0470 REMARK 3 L13: 0.0627 L23: -0.0740 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.1329 S13: 0.0263 REMARK 3 S21: -0.1601 S22: 0.0299 S23: 0.2980 REMARK 3 S31: 0.0613 S32: -0.2783 S33: -0.0321 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN D AND RESID 26:29) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1889 10.2654 24.5741 REMARK 3 T TENSOR REMARK 3 T11: 0.4287 T22: 0.1611 REMARK 3 T33: 0.5419 T12: 0.2549 REMARK 3 T13: 0.2180 T23: 0.0854 REMARK 3 L TENSOR REMARK 3 L11: 0.1257 L22: 0.0170 REMARK 3 L33: 0.1676 L12: -0.0293 REMARK 3 L13: 0.0510 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.1433 S12: -0.1942 S13: 0.0422 REMARK 3 S21: -0.2164 S22: -0.0323 S23: 0.2045 REMARK 3 S31: 0.0143 S32: 0.1864 S33: 0.0306 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN D AND RESID 30:34) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1009 14.0720 19.6314 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.4077 REMARK 3 T33: 0.3386 T12: 0.0127 REMARK 3 T13: 0.1255 T23: -0.0904 REMARK 3 L TENSOR REMARK 3 L11: 0.0074 L22: 0.1612 REMARK 3 L33: 0.0152 L12: -0.0009 REMARK 3 L13: 0.0057 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.2895 S13: -0.0888 REMARK 3 S21: -0.2488 S22: 0.0845 S23: 0.1843 REMARK 3 S31: -0.0202 S32: 0.1086 S33: 0.0935 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN D AND RESID 35:39) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0013 21.8652 19.0714 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.3708 REMARK 3 T33: 0.5096 T12: 0.0939 REMARK 3 T13: 0.0008 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.0180 REMARK 3 L33: 0.0093 L12: -0.0013 REMARK 3 L13: -0.0002 L23: 0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.0140 S13: -0.1396 REMARK 3 S21: -0.0208 S22: 0.2774 S23: -0.4499 REMARK 3 S31: -0.1957 S32: -0.0577 S33: -0.0015 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN D AND RESID 40:43) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8536 22.7172 24.7137 REMARK 3 T TENSOR REMARK 3 T11: 0.5737 T22: 0.5749 REMARK 3 T33: 0.2314 T12: -0.1450 REMARK 3 T13: 0.0230 T23: 0.0892 REMARK 3 L TENSOR REMARK 3 L11: 0.0209 L22: 0.0368 REMARK 3 L33: 0.0185 L12: -0.0288 REMARK 3 L13: 0.0168 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.0768 S13: -0.1588 REMARK 3 S21: -0.0373 S22: -0.1125 S23: -0.0067 REMARK 3 S31: -0.1417 S32: -0.0651 S33: 0.0041 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN D AND RESID 44:53) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6669 18.6418 28.8672 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.3310 REMARK 3 T33: 0.2660 T12: 0.0865 REMARK 3 T13: 0.0314 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.1683 L22: 0.0280 REMARK 3 L33: 0.0339 L12: -0.0768 REMARK 3 L13: -0.0297 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.3281 S12: -0.4105 S13: -0.2236 REMARK 3 S21: -0.1294 S22: -0.1476 S23: 0.2286 REMARK 3 S31: 0.0922 S32: -0.0366 S33: -0.1739 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: (CHAIN D AND RESID 54:57) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6946 13.8898 29.2731 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.6646 REMARK 3 T33: 0.5902 T12: 0.0292 REMARK 3 T13: 0.1105 T23: 0.1573 REMARK 3 L TENSOR REMARK 3 L11: 0.0157 L22: 0.0075 REMARK 3 L33: 0.0107 L12: 0.0037 REMARK 3 L13: 0.0139 L23: 0.0100 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: 0.0475 S13: -0.2136 REMARK 3 S21: 0.2614 S22: 0.1340 S23: -0.1430 REMARK 3 S31: -0.0509 S32: -0.0370 S33: -0.0000 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: (CHAIN D AND RESID 58:61) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7246 13.0738 29.8959 REMARK 3 T TENSOR REMARK 3 T11: 0.6043 T22: 0.9450 REMARK 3 T33: 0.5597 T12: -0.1899 REMARK 3 T13: 0.0735 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 0.0143 L22: 0.0032 REMARK 3 L33: 0.0069 L12: 0.0084 REMARK 3 L13: 0.0061 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.0424 S13: -0.0325 REMARK 3 S21: -0.1541 S22: -0.0503 S23: 0.0669 REMARK 3 S31: 0.0768 S32: -0.0117 S33: 0.0001 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: (CHAIN E AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5399 7.7776 36.8248 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.5031 REMARK 3 T33: 0.5145 T12: 0.0186 REMARK 3 T13: -0.0177 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: -0.0032 L22: -0.0111 REMARK 3 L33: 0.0876 L12: -0.0059 REMARK 3 L13: 0.0375 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.2232 S12: 0.6175 S13: 0.2760 REMARK 3 S21: 0.4126 S22: 0.2246 S23: 0.2470 REMARK 3 S31: -0.3645 S32: -0.2014 S33: -0.0002 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: (CHAIN E AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1333 18.8519 42.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.6514 T22: 0.6029 REMARK 3 T33: 0.7095 T12: 0.1944 REMARK 3 T13: 0.3776 T23: 0.1888 REMARK 3 L TENSOR REMARK 3 L11: 0.2670 L22: 0.3611 REMARK 3 L33: 0.2437 L12: -0.1398 REMARK 3 L13: 0.2487 L23: -0.2087 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.3715 S13: 0.1155 REMARK 3 S21: 0.4620 S22: -0.2300 S23: 0.2862 REMARK 3 S31: 0.1625 S32: -0.2325 S33: -0.5082 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: (CHAIN E AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9124 33.9177 35.7797 REMARK 3 T TENSOR REMARK 3 T11: 0.6857 T22: 0.8501 REMARK 3 T33: 0.7820 T12: 0.2468 REMARK 3 T13: -0.2537 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.0314 L22: 0.0124 REMARK 3 L33: 0.0256 L12: 0.0220 REMARK 3 L13: 0.0465 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.2195 S13: 0.2136 REMARK 3 S21: 0.4654 S22: 0.0058 S23: 0.1735 REMARK 3 S31: -0.4142 S32: 0.4941 S33: 0.0001 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: (CHAIN F AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2004 30.9169 35.8541 REMARK 3 T TENSOR REMARK 3 T11: 0.5934 T22: 0.5613 REMARK 3 T33: 1.0158 T12: 0.1234 REMARK 3 T13: 0.0783 T23: -0.2127 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0121 REMARK 3 L33: 0.0123 L12: -0.0079 REMARK 3 L13: -0.0097 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.5227 S12: 0.1825 S13: 0.0365 REMARK 3 S21: 0.3384 S22: -0.3967 S23: -0.0314 REMARK 3 S31: 0.0303 S32: -0.2169 S33: 0.0021 REMARK 3 TLS GROUP : 32 REMARK 3 SELECTION: (CHAIN F AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3539 24.8608 34.2385 REMARK 3 T TENSOR REMARK 3 T11: 0.4510 T22: 0.6002 REMARK 3 T33: 0.6253 T12: 0.1889 REMARK 3 T13: -0.0124 T23: -0.1446 REMARK 3 L TENSOR REMARK 3 L11: 0.1177 L22: 0.1528 REMARK 3 L33: 0.1068 L12: 0.0906 REMARK 3 L13: -0.0166 L23: -0.0912 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0361 S13: 0.2468 REMARK 3 S21: 0.6040 S22: -0.2588 S23: 0.1596 REMARK 3 S31: -0.1513 S32: 0.0768 S33: -0.0019 REMARK 3 TLS GROUP : 33 REMARK 3 SELECTION: (CHAIN F AND RESID 9:15) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4277 8.6440 41.0414 REMARK 3 T TENSOR REMARK 3 T11: 0.9787 T22: 0.6901 REMARK 3 T33: 0.7408 T12: 0.1810 REMARK 3 T13: -0.1712 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 1.1370 L22: 0.9820 REMARK 3 L33: 0.7148 L12: -0.4762 REMARK 3 L13: -0.7904 L23: 0.6078 REMARK 3 S TENSOR REMARK 3 S11: -0.5542 S12: 0.2338 S13: -0.3188 REMARK 3 S21: 0.5403 S22: 0.0877 S23: -0.4156 REMARK 3 S31: -0.5182 S32: -0.3548 S33: -0.0582 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.748 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM BIS-TRIS PROPANE, 10MM NICL2, 4 REMARK 280 -6% 2-METHYL-2,4-PENTANEDIOL, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.93800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.93800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO PROTEIN:DNA COMPLEXES IN THE A.U. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 106 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 MET D 0 REMARK 465 ARG D 1 REMARK 465 LYS D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 NZ REMARK 470 ARG D 3 NE CZ NH1 NH2 REMARK 470 LYS D 58 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DA E 5 O HOH E 201 1.85 REMARK 500 O HOH C 106 O HOH C 107 2.07 REMARK 500 O HOH C 104 O HOH C 107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 O3' DG B 1 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA B 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 NE2 REMARK 620 2 HOH A 203 O 78.2 REMARK 620 3 HIS D 21 NE2 88.0 82.1 REMARK 620 4 HOH D 103 O 76.8 141.5 68.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI E 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 2 N7 REMARK 620 2 HOH E 203 O 82.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC E 7 and C7S E REMARK 800 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide C7S E 8 and DA E REMARK 800 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JLW RELATED DB: PDB DBREF 5JLX A 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 5JLX B 0 14 PDB 5JLX 5JLX 0 14 DBREF 5JLX C 0 14 PDB 5JLX 5JLX 0 14 DBREF 5JLX D 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 5JLX E 1 15 PDB 5JLX 5JLX 1 15 DBREF 5JLX F 1 15 PDB 5JLX 5JLX 1 15 SEQADV 5JLX MET A 0 UNP P02833 EXPRESSION TAG SEQADV 5JLX SER A 39 UNP P02833 CYS 335 ENGINEERED MUTATION SEQADV 5JLX MET D 0 UNP P02833 EXPRESSION TAG SEQADV 5JLX SER D 39 UNP P02833 CYS 335 ENGINEERED MUTATION SEQRES 1 A 61 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 A 61 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 A 61 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 A 61 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 A 61 ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 B 15 DA DG DA DA DA DG DC C7S DA DT DT DA DG SEQRES 2 B 15 DA DG SEQRES 1 C 15 DT DC DT DC DT DA DA DT DG DG DC DT DT SEQRES 2 C 15 DT DC SEQRES 1 D 61 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 D 61 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 D 61 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 D 61 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 D 61 ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 E 15 DA DG DA DA DA DG DC C7S DA DT DT DA DG SEQRES 2 E 15 DA DG SEQRES 1 F 15 DT DC DT DC DT DA DA DT DG DG DC DT DT SEQRES 2 F 15 DT DC HET C7S B 7 19 HET C7S E 8 19 HET NI A 101 1 HET NI B 101 1 HET NI E 101 1 HETNAM C7S 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE HETNAM NI NICKEL (II) ION HETSYN C7S 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE (THIOPHOSPHO HETSYN 2 C7S CONNECTION ISOFORM 2) FORMUL 2 C7S 2(C9 H14 N3 O6 P S) FORMUL 7 NI 3(NI 2+) FORMUL 10 HOH *29(H2 O) HELIX 1 AA1 THR A 9 HIS A 21 1 13 HELIX 2 AA2 THR A 27 LEU A 38 1 12 HELIX 3 AA3 THR A 41 ASN A 60 1 20 HELIX 4 AA4 THR D 9 ASN D 23 1 15 HELIX 5 AA5 THR D 27 LEU D 38 1 12 HELIX 6 AA6 THR D 41 ASN D 60 1 20 LINK O3' DC B 6 P C7S B 7 1555 1555 1.60 LINK O3' C7S B 7 P DA B 8 1555 1555 1.61 LINK O3' DC E 7 P C7S E 8 1555 1555 1.60 LINK O3' C7S E 8 P DA E 9 1555 1555 1.62 LINK NE2 HIS A 21 NI NI A 101 1555 1555 2.18 LINK NI NI A 101 O HOH A 203 1555 1555 1.91 LINK NI NI A 101 NE2 HIS D 21 1555 1555 2.19 LINK NI NI A 101 O HOH D 103 1555 1555 2.22 LINK N7 DG B 1 NI NI B 101 1555 1555 2.60 LINK N7 DG E 2 NI NI E 101 1555 1555 2.47 LINK NI NI E 101 O HOH E 203 1555 1555 1.94 SITE 1 AC1 6 HIS A 21 HOH A 203 HIS D 21 LYS D 58 SITE 2 AC1 6 ASN D 60 HOH D 103 SITE 1 AC2 1 DG B 1 SITE 1 AC3 2 DG E 2 HOH E 203 SITE 1 AC4 9 TYR D 25 GLN D 50 ARG D 53 MET D 54 SITE 2 AC4 9 LYS D 57 DG E 6 DA E 9 DG F 9 SITE 3 AC4 9 DG F 10 SITE 1 AC5 7 MET D 54 LYS D 57 DC E 7 DT E 10 SITE 2 AC5 7 DA F 7 DT F 8 DG F 9 CRYST1 60.864 75.581 91.876 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010884 0.00000