HEADER HYDROLASE 28-APR-16 5JM0 TITLE STRUCTURE OF THE S. CEREVISIAE ALPHA-MANNOSIDASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-MANNOSIDASE,ALPHA-MANNOSIDASE,ALPHA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-D-MANNOSIDE MANNOHYDROLASE,ALPHA-D-MANNOSIDE COMPND 5 MANNOHYDROLASE,ALPHA-D-MANNOSIDE MANNOHYDROLASE; COMPND 6 EC: 3.2.1.24,3.2.1.24,3.2.1.24; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE COORDINATE MODEL CONTAINS A POLY-ALANINE STRETCH COMPND 9 THAT CORRESPONDS TO RESIDUES 17-27 IN THE TEMPLATE SEQUENCE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: AMS1, YGL156W, G1861; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SMD1168 KEYWDS TETRAMER, CVT CARGO, MANNOSIDASE, SELECTIVE AUTOPHAGY, HYDROLASE EXPDTA ELECTRON MICROSCOPY AUTHOR S.SCHNEIDER,J.KOSINSKI,A.J.JAKOBI,W.J.H.HAGEN,C.SACHSE REVDAT 5 02-AUG-17 5JM0 1 REVDAT 4 13-JUL-16 5JM0 1 JRNL REVDAT 3 29-JUN-16 5JM0 1 JRNL REVDAT 2 22-JUN-16 5JM0 1 JRNL REVDAT 1 15-JUN-16 5JM0 0 JRNL AUTH C.BERTIPAGLIA,S.SCHNEIDER,A.J.JAKOBI,A.K.TARAFDER,Y.S.BYKOV, JRNL AUTH 2 A.PICCO,W.KUKULSKI,J.KOSINSKI,W.J.HAGEN,A.C.RAVICHANDRAN, JRNL AUTH 3 M.WILMANNS,M.KAKSONEN,J.A.BRIGGS,C.SACHSE JRNL TITL HIGHER-ORDER ASSEMBLIES OF OLIGOMERIC CARGO RECEPTOR JRNL TITL 2 COMPLEXES FORM THE MEMBRANE SCAFFOLD OF THE CVT VESICLE. JRNL REF EMBO REP. V. 17 1044 2016 JRNL REFN ESSN 1469-3178 JRNL PMID 27266708 JRNL DOI 10.15252/EMBR.201541960 REMARK 2 REMARK 2 RESOLUTION. 6.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, RELION, UCSF REMARK 3 CHIMERA, EMAN, RELION, RELION, RELION, REMARK 3 DIREX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 80.000 REMARK 3 REMARK 3 FITTING PROCEDURE : 1. FITTING OF A HOMOLOGY MODEL BASED ON PDB REMARK 3 2WYH COMBINED WITH A HOMOLOGY MODEL BASED ON PDB 2XBZ AND 3CMG REMARK 3 FOR THE C- (RESIDUES 287-1083) AND N-TERMINAL PART (RESIDUES 45- REMARK 3 203) RESPECTIVELY 2. AB INITIO MODELLING FOR A THREE-HELIX REMARK 3 BUNDLE OF THE N-TERMINAL PART (RESIDUES 209-286) 3. CREATING AN REMARK 3 IDEAL POLY-ALANINE HELIX FOR RESIDUES 17-27 REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.300 REMARK 3 NUMBER OF PARTICLES : 33588 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: 1. FROM 85274 INITIALLY AUTO-PICKED PARTICLES, REMARK 3 16678 WERE ELIMINATED AFTER 2D CLASSIFICATION. 2. FROM 68596, REMARK 3 TWO CLASSES MAKING UP 33588 PARTICLES WERE INCLUDED IN THE FINAL REMARK 3 RECONSTRUCTION. REMARK 4 REMARK 4 5JM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220732. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ALPHA-MANNOSIDASE 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.40 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 2.5 UL OF SAMPLE WAS APPLIED, REMARK 245 OFFSET -3, 9S BLOTTING TIME REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : HIS-TAGGED REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1735 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 58.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 269.20000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 269.20000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 269.20000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 269.20000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 269.20000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 269.20000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 7 REMARK 465 TYR A 8 REMARK 465 ASP A 9 REMARK 465 PRO A 10 REMARK 465 GLN A 11 REMARK 465 PHE A 12 REMARK 465 LYS A 13 REMARK 465 PRO A 14 REMARK 465 VAL A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 ILE A 18 REMARK 465 TYR A 19 REMARK 465 GLU A 20 REMARK 465 ASN A 21 REMARK 465 ARG A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 GLN A 25 REMARK 465 PHE A 26 REMARK 465 ILE A 27 REMARK 465 ASP A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 GLY A 31 REMARK 465 ASP A 32 REMARK 465 TYR A 33 REMARK 465 HIS A 34 REMARK 465 ASP A 35 REMARK 465 LEU A 36 REMARK 465 ASN A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 LYS A 40 REMARK 465 PHE A 41 REMARK 465 TYR A 42 REMARK 465 ASP A 43 REMARK 465 LYS A 44 REMARK 465 GLU A 64 REMARK 465 ARG A 65 REMARK 465 GLY A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 PRO A 69 REMARK 465 VAL A 70 REMARK 465 SER A 71 REMARK 465 PRO A 72 REMARK 465 ASP A 73 REMARK 465 LYS A 74 REMARK 465 ARG A 75 REMARK 465 PRO A 76 REMARK 465 GLY A 179 REMARK 465 MET A 180 REMARK 465 PHE A 181 REMARK 465 GLY A 182 REMARK 465 CYS A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 GLY A 186 REMARK 465 SER A 187 REMARK 465 THR A 188 REMARK 465 ILE A 189 REMARK 465 ASN A 190 REMARK 465 PRO A 191 REMARK 465 PRO A 192 REMARK 465 ASP A 204 REMARK 465 ILE A 205 REMARK 465 VAL A 206 REMARK 465 TRP A 207 REMARK 465 PRO A 208 REMARK 465 SER A 272 REMARK 465 PHE A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 SER A 276 REMARK 465 SER A 277 REMARK 465 LYS A 278 REMARK 465 VAL A 279 REMARK 465 TYR A 280 REMARK 465 GLU A 281 REMARK 465 GLN A 282 REMARK 465 GLY A 283 REMARK 465 GLU A 284 REMARK 465 SER A 285 REMARK 465 GLN A 286 REMARK 465 THR A 679 REMARK 465 TRP A 680 REMARK 465 SER A 681 REMARK 465 LYS A 682 REMARK 465 PRO A 683 REMARK 465 GLU A 684 REMARK 465 LYS A 685 REMARK 465 VAL A 686 REMARK 465 SER A 687 REMARK 465 GLU A 688 REMARK 465 GLU A 689 REMARK 465 CYS A 690 REMARK 465 SER A 691 REMARK 465 LEU A 692 REMARK 465 ASN A 693 REMARK 465 GLY A 694 REMARK 465 SER A 695 REMARK 465 TYR A 696 REMARK 465 THR A 697 REMARK 465 SER A 698 REMARK 465 SER A 699 REMARK 465 VAL A 700 REMARK 465 THR A 701 REMARK 465 THR A 740 REMARK 465 GLU A 741 REMARK 465 HIS A 742 REMARK 465 GLY A 743 REMARK 465 ARG A 744 REMARK 465 ASN A 745 REMARK 465 LYS A 746 REMARK 465 LEU A 747 REMARK 465 GLY A 748 REMARK 465 ALA A 749 REMARK 465 ASN A 750 REMARK 465 GLN A 751 REMARK 465 VAL A 819 REMARK 465 THR A 820 REMARK 465 ASP A 997 REMARK 465 SER A 998 REMARK 465 ALA A 999 REMARK 465 VAL A 1000 REMARK 465 LYS A 1001 REMARK 465 SER A 1002 REMARK 465 ASN A 1003 REMARK 465 TYR A 1004 REMARK 465 SER A 1005 REMARK 465 LEU A 1006 REMARK 465 ASN A 1007 REMARK 465 PRO A 1008 REMARK 465 ARG A 1009 REMARK 465 ASP A 1010 REMARK 465 LYS A 1051 REMARK 465 SER A 1052 REMARK 465 LEU A 1053 REMARK 465 THR A 1054 REMARK 465 ALA A 1055 REMARK 465 THR A 1056 REMARK 465 ARG A 1057 REMARK 465 ASP A 1058 REMARK 465 GLU A 1059 REMARK 465 SER A 1060 REMARK 465 ASN A 1061 REMARK 465 HIS A 1062 REMARK 465 ALA A 1063 REMARK 465 ILE A 1064 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 46 NH1 NH2 REMARK 470 TRP A 57 CH2 REMARK 470 TRP A 58 CH2 REMARK 470 TRP A 78 CH2 REMARK 470 ARG A 84 NH1 REMARK 470 ARG A 93 NH1 NH2 REMARK 470 TRP A 105 CH2 REMARK 470 TRP A 109 CH2 REMARK 470 TRP A 120 CH2 REMARK 470 TRP A 131 CH2 REMARK 470 ARG A 156 NH1 NH2 REMARK 470 ARG A 196 NH1 REMARK 470 ARG A 201 NH1 NH2 REMARK 470 ARG A 213 NH1 NH2 REMARK 470 TRP A 220 CH2 REMARK 470 ARG A 227 NH1 NH2 REMARK 470 ARG A 240 NH1 NH2 REMARK 470 ARG A 255 NH1 NH2 REMARK 470 ARG A 259 NH1 NH2 REMARK 470 ARG A 262 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 886 O ALA A 955 2.13 REMARK 500 OD2 ASP A 254 OG SER A 257 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 967 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 UNK A -4 -71.41 -86.82 REMARK 500 UNK A -1 -73.79 -113.06 REMARK 500 LYS A 55 -3.70 66.43 REMARK 500 ALA A 95 -72.47 -105.26 REMARK 500 ASN A 96 -7.96 65.49 REMARK 500 GLU A 118 -142.31 51.45 REMARK 500 ASP A 119 -77.68 -126.39 REMARK 500 PHE A 151 -55.49 -127.95 REMARK 500 SER A 152 -8.84 -54.56 REMARK 500 PRO A 252 49.05 -85.19 REMARK 500 TYR A 269 -70.23 -81.65 REMARK 500 GLU A 330 -6.27 66.06 REMARK 500 GLU A 350 -74.80 -81.94 REMARK 500 SER A 363 179.04 179.52 REMARK 500 GLN A 364 -4.50 75.43 REMARK 500 PHE A 400 -168.95 -172.07 REMARK 500 ASN A 440 -179.66 176.07 REMARK 500 PHE A 444 125.95 -174.61 REMARK 500 HIS A 446 -167.40 -164.15 REMARK 500 PRO A 465 -175.01 -67.71 REMARK 500 THR A 468 -140.50 55.83 REMARK 500 VAL A 478 -113.93 55.23 REMARK 500 TYR A 490 -79.02 -105.22 REMARK 500 TYR A 491 -143.77 46.75 REMARK 500 VAL A 528 -67.23 -134.45 REMARK 500 LYS A 547 -63.66 -91.41 REMARK 500 HIS A 553 -63.97 -129.40 REMARK 500 LEU A 601 -72.72 -55.89 REMARK 500 ASP A 604 -70.77 -135.00 REMARK 500 TYR A 606 -135.30 66.94 REMARK 500 TYR A 608 137.72 -179.66 REMARK 500 LYS A 659 -62.30 -90.36 REMARK 500 LEU A 664 -61.84 -109.13 REMARK 500 LYS A 721 -14.51 73.48 REMARK 500 THR A 726 -71.78 -97.65 REMARK 500 LEU A 738 -68.37 -122.81 REMARK 500 TRP A 765 -70.36 -57.44 REMARK 500 VAL A 772 64.33 38.15 REMARK 500 PRO A 781 76.72 -66.03 REMARK 500 GLU A 804 73.86 55.03 REMARK 500 ALA A 816 -75.99 -56.73 REMARK 500 THR A 817 176.11 175.27 REMARK 500 ASP A 837 -116.01 56.01 REMARK 500 ASP A 876 -67.41 -102.96 REMARK 500 LYS A 886 -65.48 -127.91 REMARK 500 TYR A 893 -17.61 81.20 REMARK 500 LYS A 895 -176.53 -171.69 REMARK 500 CYS A 903 -7.09 64.75 REMARK 500 ASN A 912 63.87 64.98 REMARK 500 PRO A 925 58.32 -67.43 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 144 LEU A 145 144.05 REMARK 500 ASN A 442 SER A 443 -147.22 REMARK 500 SER A 605 TYR A 606 -149.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8166 RELATED DB: EMDB DBREF 5JM0 A -12 0 PDB 5JM0 5JM0 -12 0 DBREF 5JM0 A 1 1070 UNP P22855 MAN1_YEAST 1 1070 SEQADV 5JM0 LEU A 1071 UNP P22855 EXPRESSION TAG SEQADV 5JM0 ARG A 1072 UNP P22855 EXPRESSION TAG SEQADV 5JM0 PRO A 1073 UNP P22855 EXPRESSION TAG SEQADV 5JM0 PHE A 1074 UNP P22855 EXPRESSION TAG SEQADV 5JM0 GLU A 1075 UNP P22855 EXPRESSION TAG SEQADV 5JM0 ILE A 1076 UNP P22855 EXPRESSION TAG SEQADV 5JM0 ALA A 1077 UNP P22855 EXPRESSION TAG SEQADV 5JM0 SER A 1078 UNP P22855 EXPRESSION TAG SEQADV 5JM0 PHE A 1079 UNP P22855 EXPRESSION TAG SEQADV 5JM0 ARG A 1080 UNP P22855 EXPRESSION TAG SEQADV 5JM0 LEU A 1081 UNP P22855 EXPRESSION TAG SEQADV 5JM0 TYR A 1082 UNP P22855 EXPRESSION TAG SEQADV 5JM0 PHE A 1083 UNP P22855 EXPRESSION TAG SEQRES 1 A 1096 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 A 1096 MET SER SER GLU ASP ILE ILE TYR ASP PRO GLN PHE LYS SEQRES 3 A 1096 PRO VAL GLN GLY ILE TYR GLU ASN ARG LEU ARG GLN PHE SEQRES 4 A 1096 ILE ASP THR GLY GLY ASP TYR HIS ASP LEU ASN LEU PRO SEQRES 5 A 1096 LYS PHE TYR ASP LYS LYS ARG ILE SER LEU ASP HIS ASP SEQRES 6 A 1096 HIS VAL LYS VAL TRP TRP TYR GLN VAL SER PHE GLU ARG SEQRES 7 A 1096 GLY SER SER PRO VAL SER PRO ASP LYS ARG PRO SER TRP SEQRES 8 A 1096 LYS SER ILE ILE GLU ARG ASP LYS LYS GLY GLU LEU GLU SEQRES 9 A 1096 PHE ARG GLU ALA ASN ILE ASN GLN PRO PHE GLY PRO SER SEQRES 10 A 1096 TRP SER THR THR TRP PHE LYS VAL LYS ILE SER LEU PRO SEQRES 11 A 1096 GLU ASP TRP VAL LYS SER ASN GLU GLN LEU LEU PHE GLN SEQRES 12 A 1096 TRP ASP CYS SER ASN GLU GLY ILE VAL ILE ASP PRO LYS SEQRES 13 A 1096 THR LEU ILE PRO VAL THR ALA PHE SER GLY GLY GLU ARG SEQRES 14 A 1096 THR GLU TYR VAL LEU PRO LYS THR SER ASP GLY LYS HIS SEQRES 15 A 1096 PHE PHE TYR ILE GLU ALA GLY ASN ASN GLY MET PHE GLY SEQRES 16 A 1096 CYS GLY ALA GLY SER THR ILE ASN PRO PRO ASP ASP ASN SEQRES 17 A 1096 ARG PHE PHE HIS LEU ARG LYS ALA ASP ILE VAL TRP PRO SEQRES 18 A 1096 ASP LEU ASP ALA ARG ALA LEU TYR ILE ASP PHE TRP MET SEQRES 19 A 1096 LEU GLY ASP ALA ALA ARG GLU LEU PRO GLY ASP SER TRP SEQRES 20 A 1096 GLN LYS HIS GLN ALA ARG GLN LEU GLY ASN ALA VAL MET SEQRES 21 A 1096 ASN LEU PHE ASP PRO ASN ASP ARG SER SER VAL ARG LYS SEQRES 22 A 1096 CYS ARG GLU LEU LEU GLN ARG GLU TYR PHE ASP SER PHE SEQRES 23 A 1096 LEU GLU SER SER LYS VAL TYR GLU GLN GLY GLU SER GLN SEQRES 24 A 1096 VAL LEU THR ASN VAL TYR GLY ILE GLY ASN CYS HIS ILE SEQRES 25 A 1096 ASP THR ALA TRP LEU TRP PRO PHE ALA GLU THR ARG ARG SEQRES 26 A 1096 LYS ILE VAL ARG SER TRP SER SER GLN CYS THR LEU MET SEQRES 27 A 1096 ASP ARG PHE PRO GLU TYR LYS PHE VAL ALA SER GLN ALA SEQRES 28 A 1096 GLN GLN PHE LYS TRP LEU LEU GLU ASP HIS PRO GLU PHE SEQRES 29 A 1096 PHE ASN LYS VAL LEU ILE PRO LYS ILE GLN GLN SER GLN SEQRES 30 A 1096 PHE PHE ALA VAL GLY GLY THR TRP VAL GLU ASN ASP THR SEQRES 31 A 1096 ASN ILE PRO SER GLY GLU SER LEU ALA ARG GLN PHE PHE SEQRES 32 A 1096 PHE GLY GLN ARG PHE PHE LEU LYS HIS PHE GLY LEU LYS SEQRES 33 A 1096 SER LYS ILE PHE TRP LEU PRO ASP THR PHE GLY TYR SER SEQRES 34 A 1096 SER GLN MET PRO GLN LEU CYS ARG LEU SER GLY ILE ASP SEQRES 35 A 1096 LYS PHE LEU THR GLN LYS LEU SER TRP ASN ASN ILE ASN SEQRES 36 A 1096 SER PHE PRO HIS SER THR PHE ASN TRP ALA GLY ILE ASP SEQRES 37 A 1096 GLY SER GLN LEU LEU THR HIS MET PRO PRO GLY ASN THR SEQRES 38 A 1096 TYR THR ALA ASP SER HIS PHE GLY ASP VAL LEU ARG THR SEQRES 39 A 1096 ALA LYS GLN ASN LYS THR PRO GLU TYR TYR GLY SER GLY SEQRES 40 A 1096 LEU MET LEU TYR GLY LYS GLY ASP GLY GLY GLY GLY PRO SEQRES 41 A 1096 THR GLU GLU MET LEU GLN LYS MET ARG ARG ILE ARG SER SEQRES 42 A 1096 MET ASN ASN ARG ASN GLY ASN VAL ILE PRO LYS LEU GLN SEQRES 43 A 1096 VAL GLY ILE THR VAL ASP GLU PHE TYR ASP ASP ILE LEU SEQRES 44 A 1096 LYS ARG THR ASN GLN GLY HIS ASP LEU PRO THR TRP SER SEQRES 45 A 1096 GLY GLU LEU TYR PHE GLU PHE HIS ARG GLY THR TYR THR SEQRES 46 A 1096 SER GLN ALA GLN THR LYS LYS LEU MET ARG LEU SER GLU SEQRES 47 A 1096 ILE LYS LEU HIS ASP LEU GLU TRP ILE ALA ALA LYS THR SEQRES 48 A 1096 SER VAL LEU TYR PRO ASP SER TYR LYS TYR PRO SER LYS SEQRES 49 A 1096 GLN ILE ASN GLU LEU TRP GLU ASN VAL LEU LEU CYS GLN SEQRES 50 A 1096 PHE HIS ASP VAL LEU PRO GLY SER CYS ILE GLU MET VAL SEQRES 51 A 1096 TYR LYS TYR GLU ALA VAL PRO MET LEU HIS ASN VAL VAL SEQRES 52 A 1096 LYS GLU CYS THR SER LEU ILE ASP LYS THR VAL GLN PHE SEQRES 53 A 1096 LEU GLN SER GLN SER LYS ALA ASP LEU VAL GLU MET ARG SEQRES 54 A 1096 THR LEU THR TRP SER LYS PRO GLU LYS VAL SER GLU GLU SEQRES 55 A 1096 CYS SER LEU ASN GLY SER TYR THR SER SER VAL THR GLY SEQRES 56 A 1096 TYR ASP ASP TYR ILE VAL LEU ALA ASN GLY LYS LEU LYS SEQRES 57 A 1096 VAL ILE ILE CYS LYS LYS THR GLY VAL ILE THR SER ILE SEQRES 58 A 1096 THR ASP GLU THR LEU GLY VAL GLU TYR LEU ASP THR GLU SEQRES 59 A 1096 HIS GLY ARG ASN LYS LEU GLY ALA ASN GLN PHE VAL ILE SEQRES 60 A 1096 TYR ASP ASP LYS PRO LEU GLY TRP GLN ALA TRP ASP THR SEQRES 61 A 1096 GLU LEU TYR SER VAL ASN GLN TYR LYS TYR VAL THR LYS SEQRES 62 A 1096 PRO LYS LYS VAL GLN VAL SER CYS ASN THR LYS GLU LYS SEQRES 63 A 1096 CYS ALA VAL GLU VAL ILE PHE GLN ILE SER GLU LYS CYS SEQRES 64 A 1096 LYS ILE LYS SER VAL ILE SER LEU ASN ALA THR ALA VAL SEQRES 65 A 1096 THR ASP ALA LYS LEU SER LYS VAL ASP ILE SER THR THR SEQRES 66 A 1096 VAL GLU ASN TRP ASP ALA ARG ASN LYS PHE LEU LYS VAL SEQRES 67 A 1096 GLU PHE PRO VAL ASN ILE ARG ASN ASP PHE ALA SER TYR SEQRES 68 A 1096 GLU THR GLN PHE GLY ILE THR LYS ARG PRO THR HIS TYR SEQRES 69 A 1096 ASN THR SER TRP ASP VAL ALA LYS PHE GLU VAL CYS HIS SEQRES 70 A 1096 HIS LYS PHE ALA ASP TYR SER GLU TYR SER LYS GLY VAL SEQRES 71 A 1096 SER ILE LEU ASN ASP CYS LYS TYR GLY PHE SER THR HIS SEQRES 72 A 1096 GLY ASN LEU MET ARG LEU SER LEU LEU ARG SER PRO LYS SEQRES 73 A 1096 ALA PRO ASP ALA HIS ALA ASP MET GLY THR HIS GLU ILE SEQRES 74 A 1096 LYS TYR ALA ILE TYR PRO HIS ARG GLY ALA LEU SER SER SEQRES 75 A 1096 ASP THR VAL LYS LEU ALA HIS GLU PHE ASN TYR CYS PHE SEQRES 76 A 1096 LYS TYR LYS LEU PRO LYS ASP ILE GLY MET ASN PHE ASP SEQRES 77 A 1096 ASP ILE ILE SER ILE SER GLY ASP GLU ASN VAL ILE LEU SEQRES 78 A 1096 SER ASN ILE LYS ARG GLY GLU ASP ASP SER ALA VAL LYS SEQRES 79 A 1096 SER ASN TYR SER LEU ASN PRO ARG ASP GLU GLN SER ILE SEQRES 80 A 1096 VAL VAL ARG VAL TYR GLU SER LEU GLY GLY GLU SER PHE SEQRES 81 A 1096 ALA SER LEU ASN THR THR LEU ASN LEU LYS ARG ILE GLU SEQRES 82 A 1096 LYS VAL ASP ASN LEU GLU MET LYS VAL TYR LYS SER LEU SEQRES 83 A 1096 THR ALA THR ARG ASP GLU SER ASN HIS ALA ILE ASN ARG SEQRES 84 A 1096 ILE PRO ILE LYS LEU ARG PRO PHE GLU ILE ALA SER PHE SEQRES 85 A 1096 ARG LEU TYR PHE HELIX 1 AA1 UNK A -11 UNK A -5 1 7 HELIX 2 AA2 TRP A 78 ILE A 82 1 5 HELIX 3 AA3 TRP A 120 GLU A 125 1 6 HELIX 4 AA4 LEU A 210 LEU A 229 1 20 HELIX 5 AA5 SER A 233 ASP A 251 1 19 HELIX 6 AA6 ASP A 254 PHE A 270 1 17 HELIX 7 AA7 PRO A 306 ARG A 311 1 6 HELIX 8 AA8 ILE A 314 PHE A 328 1 15 HELIX 9 AA9 ALA A 338 HIS A 348 1 11 HELIX 10 AB1 PHE A 352 SER A 363 1 12 HELIX 11 AB2 SER A 381 PHE A 391 1 11 HELIX 12 AB3 GLN A 393 LYS A 398 5 6 HELIX 13 AB4 GLN A 418 SER A 426 1 9 HELIX 14 AB5 ASP A 477 ARG A 480 5 4 HELIX 15 AB6 THR A 481 THR A 487 1 7 HELIX 16 AB7 MET A 511 ASN A 523 1 13 HELIX 17 AB8 THR A 537 THR A 549 1 13 HELIX 18 AB9 ARG A 568 THR A 572 5 5 HELIX 19 AC1 ALA A 575 ALA A 595 1 21 HELIX 20 AC2 PRO A 609 LEU A 621 1 13 HELIX 21 AC3 LEU A 622 GLN A 624 5 3 HELIX 22 AC4 ILE A 634 ALA A 642 1 9 HELIX 23 AC5 VAL A 643 ILE A 657 1 15 HELIX 24 AC6 LEU A 664 SER A 668 5 5 HELIX 25 AC7 SER A 949 LEU A 954 1 6 HELIX 26 AC8 ALA A 955 TYR A 960 5 6 SHEET 1 AA1 3 SER A 48 LEU A 49 0 SHEET 2 AA1 3 HIS A 199 LYS A 202 -1 O LYS A 202 N SER A 48 SHEET 3 AA1 3 LEU A 128 GLN A 130 -1 N LEU A 128 O ARG A 201 SHEET 1 AA2 5 ARG A 93 GLU A 94 0 SHEET 2 AA2 5 VAL A 56 VAL A 61 -1 N TRP A 58 O ARG A 93 SHEET 3 AA2 5 THR A 107 VAL A 112 -1 O LYS A 111 N TRP A 57 SHEET 4 AA2 5 TYR A 172 GLY A 176 -1 O ILE A 173 N PHE A 110 SHEET 5 AA2 5 VAL A 139 ILE A 140 -1 N ILE A 140 O TYR A 172 SHEET 1 AA3 2 ASN A 290 VAL A 291 0 SHEET 2 AA3 2 LYS A 531 LEU A 532 1 O LYS A 531 N VAL A 291 SHEET 1 AA4 5 LYS A 403 SER A 404 0 SHEET 2 AA4 5 PHE A 365 VAL A 368 1 N ALA A 367 O SER A 404 SHEET 3 AA4 5 PHE A 333 ALA A 335 1 N PHE A 333 O PHE A 366 SHEET 4 AA4 5 ILE A 294 ASN A 296 1 N GLY A 295 O VAL A 334 SHEET 5 AA4 5 LEU A 497 TYR A 498 1 O TYR A 498 N ASN A 296 SHEET 1 AA5 3 LYS A 430 LEU A 432 0 SHEET 2 AA5 3 GLN A 458 HIS A 462 1 O HIS A 462 N PHE A 431 SHEET 3 AA5 3 PHE A 449 ALA A 452 -1 N TRP A 451 O LEU A 459 SHEET 1 AA6 2 LYS A 715 ILE A 718 0 SHEET 2 AA6 2 ILE A 725 THR A 729 -1 O THR A 726 N ILE A 717 SHEET 1 AA7 6 LYS A 776 TYR A 777 0 SHEET 2 AA7 6 ILE A 754 PRO A 759 -1 N ASP A 757 O LYS A 776 SHEET 3 AA7 6 LYS A 841 PRO A 848 -1 O LYS A 844 N ASP A 756 SHEET 4 AA7 6 LEU A 913 ARG A 920 -1 O MET A 914 N PHE A 847 SHEET 5 AA7 6 GLY A 906 THR A 909 -1 N GLY A 906 O SER A 917 SHEET 6 AA7 6 VAL A 882 CYS A 883 -1 N VAL A 882 O PHE A 907 SHEET 1 AA8 2 VAL A 784 VAL A 786 0 SHEET 2 AA8 2 VAL A 796 VAL A 798 -1 O GLU A 797 N GLN A 785 SHEET 1 AA9 7 ILE A 808 SER A 810 0 SHEET 2 AA9 7 LYS A 823 ASN A 835 -1 O THR A 832 N LYS A 809 SHEET 3 AA9 7 GLY A 932 TYR A 938 -1 O ILE A 936 N THR A 831 SHEET 4 AA9 7 LYS A 895 ASP A 902 -1 N ASP A 902 O LYS A 937 SHEET 5 AA9 7 PHE A 887 SER A 891 -1 N ALA A 888 O ILE A 899 SHEET 6 AA9 7 PHE A 855 TYR A 858 -1 N SER A 857 O ASP A 889 SHEET 7 AA9 7 THR A 865 PRO A 868 -1 O ARG A 867 N ALA A 856 SHEET 1 AB1 5 SER A 813 ALA A 816 0 SHEET 2 AB1 5 LYS A 823 ASN A 835 -1 O ASP A 828 N SER A 813 SHEET 3 AB1 5 GLY A 932 TYR A 938 -1 O ILE A 936 N THR A 831 SHEET 4 AB1 5 LYS A 895 ASP A 902 -1 N ASP A 902 O LYS A 937 SHEET 5 AB1 5 TYR A 941 ARG A 944 -1 O TYR A 941 N SER A 898 SHEET 1 AB2 4 VAL A 986 ARG A 993 0 SHEET 2 AB2 4 ILE A1014 GLU A1020 -1 O VAL A1015 N LYS A 992 SHEET 3 AB2 4 ILE A1076 TYR A1082 -1 O ALA A1077 N VAL A1018 SHEET 4 AB2 4 ARG A1038 LYS A1041 -1 N GLU A1040 O ARG A1080 SHEET 1 AB3 2 ALA A1028 SER A1029 0 SHEET 2 AB3 2 LYS A1070 LEU A1071 -1 O LEU A1071 N ALA A1028 CISPEP 1 LYS A 143 THR A 144 0 -18.41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000