HEADER LIGASE 28-APR-16 5JM7 TITLE THE STRUCTURE OF AEROBACTIN SYNTHETASE IUCA FROM A HYPERVIRULENT TITLE 2 PATHOTYPE OF KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AEROBACTIN SYNTHASE IUCA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 72407; SOURCE 4 GENE: RJF2_26555, RJF9_26895; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AEROBACTIN NIS SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.DRAKE,D.C.BAILEY,A.M.GULICK REVDAT 6 06-MAR-24 5JM7 1 REMARK REVDAT 5 04-DEC-19 5JM7 1 REMARK REVDAT 4 27-SEP-17 5JM7 1 REMARK REVDAT 3 20-SEP-17 5JM7 1 JRNL REMARK REVDAT 2 06-JUL-16 5JM7 1 JRNL REVDAT 1 15-JUN-16 5JM7 0 JRNL AUTH D.C.BAILEY,E.J.DRAKE,T.D.GRANT,A.M.GULICK JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF AEROBACTIN JRNL TITL 2 SYNTHETASE IUCA FROM A HYPERVIRULENT PATHOTYPE OF KLEBSIELLA JRNL TITL 3 PNEUMONIAE. JRNL REF BIOCHEMISTRY V. 55 3559 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27253399 JRNL DOI 10.1021/ACS.BIOCHEM.6B00409 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3533 - 5.6410 1.00 2874 159 0.1954 0.2121 REMARK 3 2 5.6410 - 4.4782 1.00 2698 137 0.1742 0.1973 REMARK 3 3 4.4782 - 3.9124 1.00 2668 133 0.1709 0.2200 REMARK 3 4 3.9124 - 3.5547 1.00 2620 129 0.2077 0.2501 REMARK 3 5 3.5547 - 3.3000 1.00 2628 130 0.2338 0.3208 REMARK 3 6 3.3000 - 3.1055 1.00 2593 140 0.2444 0.3066 REMARK 3 7 3.1055 - 2.9499 1.00 2595 135 0.2495 0.2823 REMARK 3 8 2.9499 - 2.8215 1.00 2568 136 0.2532 0.2952 REMARK 3 9 2.8215 - 2.7129 1.00 2566 155 0.2484 0.2783 REMARK 3 10 2.7129 - 2.6193 1.00 2550 135 0.2449 0.2972 REMARK 3 11 2.6193 - 2.5374 1.00 2559 128 0.2638 0.2907 REMARK 3 12 2.5374 - 2.4649 1.00 2556 136 0.2745 0.3148 REMARK 3 13 2.4649 - 2.4000 1.00 2557 137 0.2903 0.3540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4425 REMARK 3 ANGLE : 1.069 6041 REMARK 3 CHIRALITY : 0.060 673 REMARK 3 PLANARITY : 0.007 787 REMARK 3 DIHEDRAL : 14.467 3367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 122) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6955 42.2141 107.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.6019 T22: 0.4500 REMARK 3 T33: 0.4648 T12: 0.0300 REMARK 3 T13: 0.0936 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.4612 L22: 2.5582 REMARK 3 L33: 2.6307 L12: -0.5573 REMARK 3 L13: 0.3724 L23: 0.0946 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: -0.0376 S13: 0.2693 REMARK 3 S21: 0.2643 S22: 0.2137 S23: 0.0819 REMARK 3 S31: -0.6746 S32: -0.2193 S33: -0.1519 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 174) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3065 24.2271 122.8432 REMARK 3 T TENSOR REMARK 3 T11: 0.5297 T22: 0.4994 REMARK 3 T33: 0.4458 T12: 0.0375 REMARK 3 T13: 0.1122 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.4727 L22: 0.7272 REMARK 3 L33: 1.2423 L12: 0.3939 REMARK 3 L13: -0.5176 L23: -0.7351 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.1920 S13: 0.2516 REMARK 3 S21: -0.1477 S22: 0.1392 S23: 0.0998 REMARK 3 S31: -0.4634 S32: -0.2484 S33: -0.1744 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 357) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8093 11.8984 123.1992 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.4997 REMARK 3 T33: 0.4075 T12: 0.1298 REMARK 3 T13: 0.0369 T23: 0.1372 REMARK 3 L TENSOR REMARK 3 L11: 1.1571 L22: 0.4965 REMARK 3 L33: 0.5775 L12: 0.2157 REMARK 3 L13: 0.2765 L23: -0.2441 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.2681 S13: 0.2223 REMARK 3 S21: 0.1747 S22: 0.1517 S23: 0.2381 REMARK 3 S31: -0.3909 S32: -0.5872 S33: -0.0704 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 571) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4119 16.3026 101.1064 REMARK 3 T TENSOR REMARK 3 T11: 0.3343 T22: 0.4101 REMARK 3 T33: 0.3674 T12: -0.0072 REMARK 3 T13: 0.0136 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.4350 L22: 0.2648 REMARK 3 L33: 0.9019 L12: -0.0996 REMARK 3 L13: -0.1573 L23: -0.0234 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0446 S13: 0.0661 REMARK 3 S21: -0.1492 S22: 0.1305 S23: 0.0775 REMARK 3 S31: -0.1974 S32: -0.2088 S33: -0.1115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96802 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 52.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.09270 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72570 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COCKTAIL: 500-750 MM AMMONIUM SULFATE, REMARK 280 100-250 MM POTASSIUM-SODIUM TARTRATE, 100 MM SODIUM CITRATE PH REMARK 280 5.6 DROP RATIO: 1:1 PROTEIN: 5.5 MG/ML, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.48000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.24000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 176.48000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.24000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.48000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.24000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 176.48000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 88.24000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 106.79000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 264.72000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 106.79000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 264.72000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 VAL A 281 REMARK 465 ARG A 282 REMARK 465 LEU A 283 REMARK 465 THR A 284 REMARK 465 ASN A 285 REMARK 465 SER A 286 REMARK 465 VAL A 287 REMARK 465 ARG A 288 REMARK 465 HIS A 550 REMARK 465 ASN A 551 REMARK 465 GLU A 552 REMARK 465 ASN A 553 REMARK 465 THR A 554 REMARK 465 ILE A 555 REMARK 465 VAL A 556 REMARK 465 GLN A 572 REMARK 465 GLU A 573 REMARK 465 GLY A 574 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 10 CG CD1 CD2 REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 85 CZ NH1 NH2 REMARK 470 LEU A 96 CG CD1 CD2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LYS A 296 CE NZ REMARK 470 GLN A 354 CG CD OE1 NE2 REMARK 470 GLN A 466 CG CD OE1 NE2 REMARK 470 GLU A 474 CG CD OE1 OE2 REMARK 470 ASN A 487 CG OD1 ND2 REMARK 470 ILE A 561 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 160 OE1 GLU A 163 2.00 REMARK 500 NH2 ARG A 178 OD2 ASP A 249 2.12 REMARK 500 OG1 THR A 366 NE2 GLN A 426 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 158 C - N - CD ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 161 -82.27 11.24 REMARK 500 HIS A 193 -62.11 70.04 REMARK 500 SER A 263 -39.35 75.65 REMARK 500 GLU A 325 79.57 -108.41 REMARK 500 GLU A 348 127.60 -38.99 REMARK 500 ASP A 445 72.90 94.99 REMARK 500 ASP A 502 169.11 176.49 REMARK 500 GLU A 533 -37.51 -131.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JM8 RELATED DB: PDB DBREF1 5JM7 A 1 574 UNP A0A0X9V8F4_KLEPN DBREF2 5JM7 A A0A0X9V8F4 1 574 SEQADV 5JM7 GLY A -1 UNP A0A0X9V8F EXPRESSION TAG SEQADV 5JM7 HIS A 0 UNP A0A0X9V8F EXPRESSION TAG SEQRES 1 A 576 GLY HIS MET THR LEU PRO THR LYS THR SER THR LEU ASP SEQRES 2 A 576 VAL ALA ALA GLN CYS PHE LEU ASN SER LEU VAL ARG GLU SEQRES 3 A 576 THR LYS ASP TRP ARG LEU THR GLU TYR GLN PRO THR GLN SEQRES 4 A 576 LEU ILE ILE PRO LEU GLY GLU GLN GLN ALA LEU HIS PHE SEQRES 5 A 576 ARG VAL ALA TYR PHE SER PRO THR GLN HIS HIS ARG PHE SEQRES 6 A 576 GLU PHE PRO ALA ARG LEU VAL THR ALA SER GLY SER HIS SEQRES 7 A 576 PRO VAL ASP PHE ALA THR LEU SER ARG LEU ILE VAL ASP SEQRES 8 A 576 LYS LEU GLN HIS GLN LEU LEU LEU PRO ALA THR SER CYS SEQRES 9 A 576 GLU THR PHE HIS GLN ARG VAL MET GLU SER HIS ALA HIS SEQRES 10 A 576 THR GLN GLN ALA ILE ASP ALA ARG HIS ASP TRP ALA ALA SEQRES 11 A 576 LEU ARG GLU LYS ALA LEU ASN PHE GLY GLU ALA GLU GLN SEQRES 12 A 576 ALA LEU LEU VAL GLY HIS ALA PHE HIS PRO ALA PRO LYS SEQRES 13 A 576 SER HIS GLU PRO PHE ASN GLN GLN GLU ALA GLU ARG TYR SEQRES 14 A 576 LEU PRO ASP PHE ALA PRO HIS PHE PRO LEU ARG TRP PHE SEQRES 15 A 576 ALA VAL ASN LYS THR GLN ILE ALA GLY GLU SER LEU HIS SEQRES 16 A 576 LEU ASN LEU GLN GLN ARG LEU THR ARG PHE ALA ALA GLU SEQRES 17 A 576 ASN ALA PRO GLN LEU LEU ASN GLU LEU SER ASP ASN GLN SEQRES 18 A 576 TRP LEU PHE PRO LEU HIS PRO TRP GLN GLY GLU TYR LEU SEQRES 19 A 576 LEU GLN GLN GLU TRP CYS GLN GLU LEU VAL ALA LYS GLY SEQRES 20 A 576 LEU ILE LYS ASP LEU GLY GLU ALA GLY ALA PRO TRP LEU SEQRES 21 A 576 PRO THR THR SER SER ARG SER LEU TYR CYS ALA THR SER SEQRES 22 A 576 ARG ASP MET ILE LYS PHE SER LEU SER VAL ARG LEU THR SEQRES 23 A 576 ASN SER VAL ARG THR LEU SER VAL LYS GLU VAL LYS ARG SEQRES 24 A 576 GLY MET ARG LEU ALA ARG LEU ALA GLN THR ASP ASP TRP SEQRES 25 A 576 GLN THR LEU GLN ALA ARG PHE PRO THR PHE ARG VAL MET SEQRES 26 A 576 GLN GLU ASP GLY TRP ALA GLY LEU ARG ASP LEU HIS GLY SEQRES 27 A 576 ASN ILE MET GLN GLU SER LEU PHE ALA LEU ARG GLU ASN SEQRES 28 A 576 LEU LEU VAL ASP GLN PRO GLN SER GLN THR ASN VAL LEU SEQRES 29 A 576 VAL SER LEU THR GLN ALA ALA PRO ASP GLY GLY ASP SER SEQRES 30 A 576 LEU LEU VAL ALA ALA VAL LYS ARG LEU SER ASP ARG LEU SEQRES 31 A 576 GLY ILE THR ALA GLN GLN ALA ALA HIS ALA TRP VAL ASP SEQRES 32 A 576 ALA TYR CYS HIS GLN VAL LEU LYS PRO LEU PHE THR ALA SEQRES 33 A 576 GLU ALA ASP TYR GLY LEU VAL LEU LEU ALA HIS GLN GLN SEQRES 34 A 576 ASN ILE LEU VAL GLN MET LEU GLY ASP LEU PRO VAL GLY SEQRES 35 A 576 LEU ILE TYR ARG ASP CYS GLN GLY SER ALA PHE MET PRO SEQRES 36 A 576 HIS ALA ALA GLY TRP LEU ASP THR ILE GLY GLU ALA GLN SEQRES 37 A 576 ALA GLU ASN VAL PHE THR ARG GLU GLN LEU LEU ARG TYR SEQRES 38 A 576 PHE PRO TYR TYR LEU LEU VAL ASN SER THR PHE ALA VAL SEQRES 39 A 576 THR ALA ALA LEU GLY ALA ALA GLY LEU ASP SER GLU ALA SEQRES 40 A 576 ASN LEU MET ALA ARG VAL ARG THR LEU LEU ALA GLU MET SEQRES 41 A 576 ARG ASP GLN VAL THR HIS LYS THR CYS LEU ASN TYR VAL SEQRES 42 A 576 LEU GLU ASN PRO TYR TRP ASN VAL LYS GLY ASN PHE PHE SEQRES 43 A 576 CYS TYR LEU ASN ASP HIS ASN GLU ASN THR ILE VAL ASP SEQRES 44 A 576 PRO SER VAL ILE TYR PHE ASP PHE ALA ASN PRO LEU LEU SEQRES 45 A 576 ALA GLN GLU GLY HET SO4 A 600 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *51(H2 O) HELIX 1 AA1 ASP A 11 GLU A 24 1 14 HELIX 2 AA2 ASP A 79 LEU A 95 1 17 HELIX 3 AA3 PRO A 98 ARG A 123 1 26 HELIX 4 AA4 ASP A 125 LYS A 132 5 8 HELIX 5 AA5 ASN A 135 GLN A 141 1 7 HELIX 6 AA6 GLN A 161 LEU A 168 1 8 HELIX 7 AA7 PRO A 169 ALA A 172 5 4 HELIX 8 AA8 ASN A 195 ALA A 208 1 14 HELIX 9 AA9 PRO A 209 LEU A 215 5 7 HELIX 10 AB1 HIS A 225 GLN A 235 1 11 HELIX 11 AB2 GLN A 235 LYS A 244 1 10 HELIX 12 AB3 SER A 291 ALA A 305 1 15 HELIX 13 AB4 THR A 307 PHE A 317 1 11 HELIX 14 AB5 LEU A 362 GLN A 367 1 6 HELIX 15 AB6 SER A 375 GLY A 389 1 15 HELIX 16 AB7 THR A 391 VAL A 407 1 17 HELIX 17 AB8 VAL A 407 GLY A 419 1 13 HELIX 18 AB9 HIS A 425 GLN A 427 5 3 HELIX 19 AC1 ASP A 445 GLN A 447 5 3 HELIX 20 AC2 ALA A 455 ILE A 462 1 8 HELIX 21 AC3 THR A 472 LEU A 485 1 14 HELIX 22 AC4 SER A 488 ALA A 499 1 12 HELIX 23 AC5 SER A 503 ASP A 520 1 18 HELIX 24 AC6 LYS A 525 ASN A 534 1 10 HELIX 25 AC7 ASN A 542 ASN A 548 1 7 SHEET 1 AA1 5 ARG A 29 LEU A 30 0 SHEET 2 AA1 5 GLN A 37 PRO A 41 -1 O ILE A 39 N ARG A 29 SHEET 3 AA1 5 ALA A 47 TYR A 54 -1 O LEU A 48 N ILE A 40 SHEET 4 AA1 5 ARG A 62 VAL A 70 -1 O ARG A 68 N HIS A 49 SHEET 5 AA1 5 SER A 75 VAL A 78 -1 O HIS A 76 N LEU A 69 SHEET 1 AA2 8 ILE A 187 SER A 191 0 SHEET 2 AA2 8 GLY A 327 ARG A 332 -1 O GLY A 330 N ALA A 188 SHEET 3 AA2 8 ILE A 338 GLU A 348 -1 O LEU A 346 N GLY A 327 SHEET 4 AA2 8 ASP A 273 PHE A 277 -1 N MET A 274 O ARG A 347 SHEET 5 AA2 8 SER A 265 TYR A 267 -1 N LEU A 266 O ILE A 275 SHEET 6 AA2 8 ILE A 247 PRO A 259 -1 N LEU A 258 O TYR A 267 SHEET 7 AA2 8 PHE A 175 ASN A 183 -1 N PHE A 175 O TRP A 257 SHEET 8 AA2 8 GLN A 219 LEU A 224 -1 O TRP A 220 N VAL A 182 SHEET 1 AA3 4 PHE A 320 VAL A 322 0 SHEET 2 AA3 4 LEU A 437 TYR A 443 1 O TYR A 443 N ARG A 321 SHEET 3 AA3 4 ILE A 429 LEU A 434 -1 N GLN A 432 O VAL A 439 SHEET 4 AA3 4 GLN A 358 VAL A 361 -1 N GLN A 358 O MET A 433 SHEET 1 AA4 2 LEU A 420 LEU A 422 0 SHEET 2 AA4 2 SER A 449 PHE A 451 -1 O ALA A 450 N VAL A 421 SHEET 1 AA5 2 TYR A 536 LYS A 540 0 SHEET 2 AA5 2 TYR A 562 ALA A 566 -1 O PHE A 565 N TRP A 537 CISPEP 1 GLN A 34 PRO A 35 0 -0.06 CISPEP 2 PHE A 65 PRO A 66 0 7.92 CISPEP 3 GLU A 157 PRO A 158 0 -1.96 SITE 1 AC1 7 SER A 262 ARG A 264 SER A 265 LYS A 276 SITE 2 AC1 7 ARG A 347 GLN A 427 ASP A 445 CRYST1 106.790 106.790 264.720 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009364 0.005406 0.000000 0.00000 SCALE2 0.000000 0.010813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003778 0.00000