data_5JM9 # _entry.id 5JM9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JM9 WWPDB D_1000220862 EMDB EMD-8167 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-8167 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JM9 _pdbx_database_status.recvd_initial_deposition_date 2016-04-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sachse, C.' 1 'Bertipaglia, C.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Embo Rep.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1469-3178 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 1044 _citation.page_last 1060 _citation.title 'Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embr.201541960 _citation.pdbx_database_id_PubMed 27266708 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bertipaglia, C.' 1 primary 'Schneider, S.' 2 primary 'Jakobi, A.J.' 3 primary 'Tarafder, A.K.' 4 primary 'Bykov, Y.S.' 5 primary 'Picco, A.' 6 primary 'Kukulski, W.' 7 primary 'Kosinski, J.' 8 primary 'Hagen, W.J.' 9 primary 'Ravichandran, A.C.' 10 primary 'Wilmanns, M.' 11 primary 'Kaksonen, M.' 12 primary 'Briggs, J.A.' 13 primary 'Sachse, C.' 14 # _cell.entry_id 5JM9 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JM9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Vacuolar aminopeptidase 1' _entity.formula_weight 57162.430 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.4.11.22 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Aminopeptidase yscI,Leucine aminopeptidase IV,LAPIV,Lysosomal aminopeptidase III,Polypeptidase,Vacuolar aminopeptidase I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEEQREILEQLKKTLQMLTVEPSKNNQIANEEKEKKENENSWCILEHNYEDIAQEFIDFIYKNPTTYHVVSFFAELLDKH NFKYLSEKSNWQDSIGEDGGKFYTIRNGTNLSAFILGKNWRAEKGVGVIGSHVDALTVKLKPVSFKDTAEGYGRIAVAPY GGTLNELWLDRDLGIGGRLLYKKKGTNEIKSALVDSTPLPVCRIPSLAPHFGKPAEGPFDKEDQTIPVIGFPTPDEEGNE PPTDDEKKSPLFGKHCIHLLRYVAKLAGVEVSELIQMDLDLFDVQKGTIGGIGKHFLFAPRLDDRLCSFAAMIALICYAK DVNTEESDLFSTVTLYDNEEIGSLTRQGAKGGLLESVVERSSSAFTKKPVDLHTVWANSIILSADVNHLYNPNFPEVYLK NHFPVPNVGITLSLDPNGHMATDVVGTALVEELARRNGDKVQYFQIKNNSRSGGTIGPSLASQTGARTIDLGIAQLSMHS IRAATGSKDVGLGVKFFNGFFKHWRSVYDEFGEL ; _entity_poly.pdbx_seq_one_letter_code_can ;MEEQREILEQLKKTLQMLTVEPSKNNQIANEEKEKKENENSWCILEHNYEDIAQEFIDFIYKNPTTYHVVSFFAELLDKH NFKYLSEKSNWQDSIGEDGGKFYTIRNGTNLSAFILGKNWRAEKGVGVIGSHVDALTVKLKPVSFKDTAEGYGRIAVAPY GGTLNELWLDRDLGIGGRLLYKKKGTNEIKSALVDSTPLPVCRIPSLAPHFGKPAEGPFDKEDQTIPVIGFPTPDEEGNE PPTDDEKKSPLFGKHCIHLLRYVAKLAGVEVSELIQMDLDLFDVQKGTIGGIGKHFLFAPRLDDRLCSFAAMIALICYAK DVNTEESDLFSTVTLYDNEEIGSLTRQGAKGGLLESVVERSSSAFTKKPVDLHTVWANSIILSADVNHLYNPNFPEVYLK NHFPVPNVGITLSLDPNGHMATDVVGTALVEELARRNGDKVQYFQIKNNSRSGGTIGPSLASQTGARTIDLGIAQLSMHS IRAATGSKDVGLGVKFFNGFFKHWRSVYDEFGEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 GLU n 1 4 GLN n 1 5 ARG n 1 6 GLU n 1 7 ILE n 1 8 LEU n 1 9 GLU n 1 10 GLN n 1 11 LEU n 1 12 LYS n 1 13 LYS n 1 14 THR n 1 15 LEU n 1 16 GLN n 1 17 MET n 1 18 LEU n 1 19 THR n 1 20 VAL n 1 21 GLU n 1 22 PRO n 1 23 SER n 1 24 LYS n 1 25 ASN n 1 26 ASN n 1 27 GLN n 1 28 ILE n 1 29 ALA n 1 30 ASN n 1 31 GLU n 1 32 GLU n 1 33 LYS n 1 34 GLU n 1 35 LYS n 1 36 LYS n 1 37 GLU n 1 38 ASN n 1 39 GLU n 1 40 ASN n 1 41 SER n 1 42 TRP n 1 43 CYS n 1 44 ILE n 1 45 LEU n 1 46 GLU n 1 47 HIS n 1 48 ASN n 1 49 TYR n 1 50 GLU n 1 51 ASP n 1 52 ILE n 1 53 ALA n 1 54 GLN n 1 55 GLU n 1 56 PHE n 1 57 ILE n 1 58 ASP n 1 59 PHE n 1 60 ILE n 1 61 TYR n 1 62 LYS n 1 63 ASN n 1 64 PRO n 1 65 THR n 1 66 THR n 1 67 TYR n 1 68 HIS n 1 69 VAL n 1 70 VAL n 1 71 SER n 1 72 PHE n 1 73 PHE n 1 74 ALA n 1 75 GLU n 1 76 LEU n 1 77 LEU n 1 78 ASP n 1 79 LYS n 1 80 HIS n 1 81 ASN n 1 82 PHE n 1 83 LYS n 1 84 TYR n 1 85 LEU n 1 86 SER n 1 87 GLU n 1 88 LYS n 1 89 SER n 1 90 ASN n 1 91 TRP n 1 92 GLN n 1 93 ASP n 1 94 SER n 1 95 ILE n 1 96 GLY n 1 97 GLU n 1 98 ASP n 1 99 GLY n 1 100 GLY n 1 101 LYS n 1 102 PHE n 1 103 TYR n 1 104 THR n 1 105 ILE n 1 106 ARG n 1 107 ASN n 1 108 GLY n 1 109 THR n 1 110 ASN n 1 111 LEU n 1 112 SER n 1 113 ALA n 1 114 PHE n 1 115 ILE n 1 116 LEU n 1 117 GLY n 1 118 LYS n 1 119 ASN n 1 120 TRP n 1 121 ARG n 1 122 ALA n 1 123 GLU n 1 124 LYS n 1 125 GLY n 1 126 VAL n 1 127 GLY n 1 128 VAL n 1 129 ILE n 1 130 GLY n 1 131 SER n 1 132 HIS n 1 133 VAL n 1 134 ASP n 1 135 ALA n 1 136 LEU n 1 137 THR n 1 138 VAL n 1 139 LYS n 1 140 LEU n 1 141 LYS n 1 142 PRO n 1 143 VAL n 1 144 SER n 1 145 PHE n 1 146 LYS n 1 147 ASP n 1 148 THR n 1 149 ALA n 1 150 GLU n 1 151 GLY n 1 152 TYR n 1 153 GLY n 1 154 ARG n 1 155 ILE n 1 156 ALA n 1 157 VAL n 1 158 ALA n 1 159 PRO n 1 160 TYR n 1 161 GLY n 1 162 GLY n 1 163 THR n 1 164 LEU n 1 165 ASN n 1 166 GLU n 1 167 LEU n 1 168 TRP n 1 169 LEU n 1 170 ASP n 1 171 ARG n 1 172 ASP n 1 173 LEU n 1 174 GLY n 1 175 ILE n 1 176 GLY n 1 177 GLY n 1 178 ARG n 1 179 LEU n 1 180 LEU n 1 181 TYR n 1 182 LYS n 1 183 LYS n 1 184 LYS n 1 185 GLY n 1 186 THR n 1 187 ASN n 1 188 GLU n 1 189 ILE n 1 190 LYS n 1 191 SER n 1 192 ALA n 1 193 LEU n 1 194 VAL n 1 195 ASP n 1 196 SER n 1 197 THR n 1 198 PRO n 1 199 LEU n 1 200 PRO n 1 201 VAL n 1 202 CYS n 1 203 ARG n 1 204 ILE n 1 205 PRO n 1 206 SER n 1 207 LEU n 1 208 ALA n 1 209 PRO n 1 210 HIS n 1 211 PHE n 1 212 GLY n 1 213 LYS n 1 214 PRO n 1 215 ALA n 1 216 GLU n 1 217 GLY n 1 218 PRO n 1 219 PHE n 1 220 ASP n 1 221 LYS n 1 222 GLU n 1 223 ASP n 1 224 GLN n 1 225 THR n 1 226 ILE n 1 227 PRO n 1 228 VAL n 1 229 ILE n 1 230 GLY n 1 231 PHE n 1 232 PRO n 1 233 THR n 1 234 PRO n 1 235 ASP n 1 236 GLU n 1 237 GLU n 1 238 GLY n 1 239 ASN n 1 240 GLU n 1 241 PRO n 1 242 PRO n 1 243 THR n 1 244 ASP n 1 245 ASP n 1 246 GLU n 1 247 LYS n 1 248 LYS n 1 249 SER n 1 250 PRO n 1 251 LEU n 1 252 PHE n 1 253 GLY n 1 254 LYS n 1 255 HIS n 1 256 CYS n 1 257 ILE n 1 258 HIS n 1 259 LEU n 1 260 LEU n 1 261 ARG n 1 262 TYR n 1 263 VAL n 1 264 ALA n 1 265 LYS n 1 266 LEU n 1 267 ALA n 1 268 GLY n 1 269 VAL n 1 270 GLU n 1 271 VAL n 1 272 SER n 1 273 GLU n 1 274 LEU n 1 275 ILE n 1 276 GLN n 1 277 MET n 1 278 ASP n 1 279 LEU n 1 280 ASP n 1 281 LEU n 1 282 PHE n 1 283 ASP n 1 284 VAL n 1 285 GLN n 1 286 LYS n 1 287 GLY n 1 288 THR n 1 289 ILE n 1 290 GLY n 1 291 GLY n 1 292 ILE n 1 293 GLY n 1 294 LYS n 1 295 HIS n 1 296 PHE n 1 297 LEU n 1 298 PHE n 1 299 ALA n 1 300 PRO n 1 301 ARG n 1 302 LEU n 1 303 ASP n 1 304 ASP n 1 305 ARG n 1 306 LEU n 1 307 CYS n 1 308 SER n 1 309 PHE n 1 310 ALA n 1 311 ALA n 1 312 MET n 1 313 ILE n 1 314 ALA n 1 315 LEU n 1 316 ILE n 1 317 CYS n 1 318 TYR n 1 319 ALA n 1 320 LYS n 1 321 ASP n 1 322 VAL n 1 323 ASN n 1 324 THR n 1 325 GLU n 1 326 GLU n 1 327 SER n 1 328 ASP n 1 329 LEU n 1 330 PHE n 1 331 SER n 1 332 THR n 1 333 VAL n 1 334 THR n 1 335 LEU n 1 336 TYR n 1 337 ASP n 1 338 ASN n 1 339 GLU n 1 340 GLU n 1 341 ILE n 1 342 GLY n 1 343 SER n 1 344 LEU n 1 345 THR n 1 346 ARG n 1 347 GLN n 1 348 GLY n 1 349 ALA n 1 350 LYS n 1 351 GLY n 1 352 GLY n 1 353 LEU n 1 354 LEU n 1 355 GLU n 1 356 SER n 1 357 VAL n 1 358 VAL n 1 359 GLU n 1 360 ARG n 1 361 SER n 1 362 SER n 1 363 SER n 1 364 ALA n 1 365 PHE n 1 366 THR n 1 367 LYS n 1 368 LYS n 1 369 PRO n 1 370 VAL n 1 371 ASP n 1 372 LEU n 1 373 HIS n 1 374 THR n 1 375 VAL n 1 376 TRP n 1 377 ALA n 1 378 ASN n 1 379 SER n 1 380 ILE n 1 381 ILE n 1 382 LEU n 1 383 SER n 1 384 ALA n 1 385 ASP n 1 386 VAL n 1 387 ASN n 1 388 HIS n 1 389 LEU n 1 390 TYR n 1 391 ASN n 1 392 PRO n 1 393 ASN n 1 394 PHE n 1 395 PRO n 1 396 GLU n 1 397 VAL n 1 398 TYR n 1 399 LEU n 1 400 LYS n 1 401 ASN n 1 402 HIS n 1 403 PHE n 1 404 PRO n 1 405 VAL n 1 406 PRO n 1 407 ASN n 1 408 VAL n 1 409 GLY n 1 410 ILE n 1 411 THR n 1 412 LEU n 1 413 SER n 1 414 LEU n 1 415 ASP n 1 416 PRO n 1 417 ASN n 1 418 GLY n 1 419 HIS n 1 420 MET n 1 421 ALA n 1 422 THR n 1 423 ASP n 1 424 VAL n 1 425 VAL n 1 426 GLY n 1 427 THR n 1 428 ALA n 1 429 LEU n 1 430 VAL n 1 431 GLU n 1 432 GLU n 1 433 LEU n 1 434 ALA n 1 435 ARG n 1 436 ARG n 1 437 ASN n 1 438 GLY n 1 439 ASP n 1 440 LYS n 1 441 VAL n 1 442 GLN n 1 443 TYR n 1 444 PHE n 1 445 GLN n 1 446 ILE n 1 447 LYS n 1 448 ASN n 1 449 ASN n 1 450 SER n 1 451 ARG n 1 452 SER n 1 453 GLY n 1 454 GLY n 1 455 THR n 1 456 ILE n 1 457 GLY n 1 458 PRO n 1 459 SER n 1 460 LEU n 1 461 ALA n 1 462 SER n 1 463 GLN n 1 464 THR n 1 465 GLY n 1 466 ALA n 1 467 ARG n 1 468 THR n 1 469 ILE n 1 470 ASP n 1 471 LEU n 1 472 GLY n 1 473 ILE n 1 474 ALA n 1 475 GLN n 1 476 LEU n 1 477 SER n 1 478 MET n 1 479 HIS n 1 480 SER n 1 481 ILE n 1 482 ARG n 1 483 ALA n 1 484 ALA n 1 485 THR n 1 486 GLY n 1 487 SER n 1 488 LYS n 1 489 ASP n 1 490 VAL n 1 491 GLY n 1 492 LEU n 1 493 GLY n 1 494 VAL n 1 495 LYS n 1 496 PHE n 1 497 PHE n 1 498 ASN n 1 499 GLY n 1 500 PHE n 1 501 PHE n 1 502 LYS n 1 503 HIS n 1 504 TRP n 1 505 ARG n 1 506 SER n 1 507 VAL n 1 508 TYR n 1 509 ASP n 1 510 GLU n 1 511 PHE n 1 512 GLY n 1 513 GLU n 1 514 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 514 _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APE1, API, LAP4, YSC1, YKL103C, YKL455' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant RIL _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector pETM33 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AMPL_YEAST _struct_ref.pdbx_db_accession P14904 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEEQREILEQLKKTLQMLTVEPSKNNQIANEEKEKKENENSWCILEHNYEDIAQEFIDFIYKNPTTYHVVSFFAELLDKH NFKYLSEKSNWQDSIGEDGGKFYTIRNGTNLSAFILGKNWRAEKGVGVIGSHVDALTVKLKPVSFKDTAEGYGRIAVAPY GGTLNELWLDRDLGIGGRLLYKKKGTNEIKSALVDSTPLPVCRIPSLAPHFGKPAEGPFDKEDQTIPVIGFPTPDEEGNE PPTDDEKKSPLFGKHCIHLLRYVAKLAGVEVSELIQMDLDLFDVQKGTIGGIGKHFLFAPRLDDRLCSFAAMIALICYAK DVNTEESDLFSTVTLYDNEEIGSLTRQGAKGGLLESVVERSSSAFTKKPVDLHTVWANSIILSADVNHLYNPNFPEVYLK NHFPVPNVGITLSLDPNGHMATDVVGTALVEELARRNGDKVQYFQIKNNSRSGGTIGPSLASQTGARTIDLGIAQLSMHS IRAATGSKDVGLGVKFFNGFFKHWRSVYDEFGEL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5JM9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 514 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14904 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 514 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -43 _struct_ref_seq.pdbx_auth_seq_align_end 470 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JM9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 5JM9 _struct.title 'Structure of S. cerevesiae mApe1 dodecamer' _struct.pdbx_descriptor 'Vacuolar aminopeptidase 1 (E.C.3.4.11.22)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JM9 _struct_keywords.text 'dodecamer, aminopeptidase, vacuole, cvt, Hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 52 ? ASN A 63 ? ILE A 8 ASN A 19 1 ? 12 HELX_P HELX_P2 AA2 THR A 65 ? LYS A 79 ? THR A 21 LYS A 35 1 ? 15 HELX_P HELX_P3 AA3 ARG A 121 ? GLY A 125 ? ARG A 77 GLY A 81 5 ? 5 HELX_P HELX_P4 AA4 ASN A 165 ? LEU A 169 ? ASN A 121 LEU A 125 5 ? 5 HELX_P HELX_P5 AA5 THR A 243 ? LYS A 248 ? THR A 199 LYS A 204 1 ? 6 HELX_P HELX_P6 AA6 CYS A 256 ? GLY A 268 ? CYS A 212 GLY A 224 1 ? 13 HELX_P HELX_P7 AA7 GLU A 270 ? SER A 272 ? GLU A 226 SER A 228 5 ? 3 HELX_P HELX_P8 AA8 ARG A 301 ? ASP A 321 ? ARG A 257 ASP A 277 1 ? 21 HELX_P HELX_P9 AA9 VAL A 322 ? SER A 327 ? VAL A 278 SER A 283 5 ? 6 HELX_P HELX_P10 AB1 GLY A 348 ? GLY A 351 ? GLY A 304 GLY A 307 5 ? 4 HELX_P HELX_P11 AB2 GLY A 352 ? THR A 366 ? GLY A 308 THR A 322 1 ? 15 HELX_P HELX_P12 AB3 ASP A 371 ? ASN A 378 ? ASP A 327 ASN A 334 1 ? 8 HELX_P HELX_P13 AB4 PHE A 394 ? TYR A 398 ? PHE A 350 TYR A 354 5 ? 5 HELX_P HELX_P14 AB5 ASP A 423 ? GLY A 438 ? ASP A 379 GLY A 394 1 ? 16 HELX_P HELX_P15 AB6 THR A 455 ? GLY A 465 ? THR A 411 GLY A 421 1 ? 11 HELX_P HELX_P16 AB7 LYS A 488 ? GLU A 510 ? LYS A 444 GLU A 466 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 51 A . ? ASP 7 A ILE 52 A ? ILE 8 A 1 -11.74 2 THR 197 A . ? THR 153 A PRO 198 A ? PRO 154 A 1 5.86 3 ASP 303 A . ? ASP 259 A ASP 304 A ? ASP 260 A 1 -1.92 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 9 ? AA2 ? 6 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA1 8 9 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 83 ? TYR A 84 ? LYS A 39 TYR A 40 AA1 2 GLY A 100 ? ARG A 106 ? GLY A 56 ARG A 62 AA1 3 ASN A 110 ? LEU A 116 ? ASN A 66 LEU A 72 AA1 4 PHE A 330 ? TYR A 336 ? PHE A 286 TYR A 292 AA1 5 GLY A 127 ? HIS A 132 ? GLY A 83 HIS A 88 AA1 6 ILE A 380 ? ALA A 384 ? ILE A 336 ALA A 340 AA1 7 ARG A 467 ? GLY A 472 ? ARG A 423 GLY A 428 AA1 8 ILE A 410 ? LEU A 414 ? ILE A 366 LEU A 370 AA1 9 VAL A 441 ? GLN A 445 ? VAL A 397 GLN A 401 AA2 1 LYS A 190 ? ASP A 195 ? LYS A 146 ASP A 151 AA2 2 LEU A 173 ? TYR A 181 ? LEU A 129 TYR A 137 AA2 3 LEU A 274 ? ASP A 283 ? LEU A 230 ASP A 239 AA2 4 THR A 137 ? ALA A 149 ? THR A 93 ALA A 105 AA2 5 TYR A 152 ? TYR A 160 ? TYR A 108 TYR A 116 AA2 6 ILE A 226 ? PRO A 227 ? ILE A 182 PRO A 183 AA3 1 THR A 288 ? GLY A 290 ? THR A 244 GLY A 246 AA3 2 PHE A 296 ? ALA A 299 ? PHE A 252 ALA A 255 AA3 3 ALA A 483 ? GLY A 486 ? ALA A 439 GLY A 442 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 83 ? N LYS A 39 O LYS A 101 ? O LYS A 57 AA1 2 3 N ARG A 106 ? N ARG A 62 O ASN A 110 ? O ASN A 66 AA1 3 4 N LEU A 111 ? N LEU A 67 O LEU A 335 ? O LEU A 291 AA1 4 5 O TYR A 336 ? O TYR A 292 N SER A 131 ? N SER A 87 AA1 5 6 N GLY A 130 ? N GLY A 86 O LEU A 382 ? O LEU A 338 AA1 6 7 N ILE A 381 ? N ILE A 337 O ILE A 469 ? O ILE A 425 AA1 7 8 O GLY A 472 ? O GLY A 428 N THR A 411 ? N THR A 367 AA1 8 9 N LEU A 412 ? N LEU A 368 O GLN A 442 ? O GLN A 398 AA2 1 2 O ALA A 192 ? O ALA A 148 N LEU A 179 ? N LEU A 135 AA2 2 3 N LEU A 180 ? N LEU A 136 O GLN A 276 ? O GLN A 232 AA2 3 4 O LEU A 281 ? O LEU A 237 N VAL A 138 ? N VAL A 94 AA2 4 5 N THR A 137 ? N THR A 93 O TYR A 160 ? O TYR A 116 AA2 5 6 N ILE A 155 ? N ILE A 111 O ILE A 226 ? O ILE A 182 AA3 1 2 N THR A 288 ? N THR A 244 O PHE A 298 ? O PHE A 254 AA3 2 3 N ALA A 299 ? N ALA A 255 O ALA A 483 ? O ALA A 439 # _atom_sites.entry_id 5JM9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -43 ? ? ? A . n A 1 2 GLU 2 -42 ? ? ? A . n A 1 3 GLU 3 -41 ? ? ? A . n A 1 4 GLN 4 -40 ? ? ? A . n A 1 5 ARG 5 -39 ? ? ? A . n A 1 6 GLU 6 -38 ? ? ? A . n A 1 7 ILE 7 -37 ? ? ? A . n A 1 8 LEU 8 -36 ? ? ? A . n A 1 9 GLU 9 -35 ? ? ? A . n A 1 10 GLN 10 -34 ? ? ? A . n A 1 11 LEU 11 -33 ? ? ? A . n A 1 12 LYS 12 -32 ? ? ? A . n A 1 13 LYS 13 -31 ? ? ? A . n A 1 14 THR 14 -30 ? ? ? A . n A 1 15 LEU 15 -29 ? ? ? A . n A 1 16 GLN 16 -28 ? ? ? A . n A 1 17 MET 17 -27 ? ? ? A . n A 1 18 LEU 18 -26 ? ? ? A . n A 1 19 THR 19 -25 ? ? ? A . n A 1 20 VAL 20 -24 ? ? ? A . n A 1 21 GLU 21 -23 ? ? ? A . n A 1 22 PRO 22 -22 ? ? ? A . n A 1 23 SER 23 -21 ? ? ? A . n A 1 24 LYS 24 -20 ? ? ? A . n A 1 25 ASN 25 -19 ? ? ? A . n A 1 26 ASN 26 -18 ? ? ? A . n A 1 27 GLN 27 -17 ? ? ? A . n A 1 28 ILE 28 -16 ? ? ? A . n A 1 29 ALA 29 -15 ? ? ? A . n A 1 30 ASN 30 -14 ? ? ? A . n A 1 31 GLU 31 -13 ? ? ? A . n A 1 32 GLU 32 -12 ? ? ? A . n A 1 33 LYS 33 -11 ? ? ? A . n A 1 34 GLU 34 -10 ? ? ? A . n A 1 35 LYS 35 -9 ? ? ? A . n A 1 36 LYS 36 -8 ? ? ? A . n A 1 37 GLU 37 -7 ? ? ? A . n A 1 38 ASN 38 -6 ? ? ? A . n A 1 39 GLU 39 -5 ? ? ? A . n A 1 40 ASN 40 -4 ? ? ? A . n A 1 41 SER 41 -3 ? ? ? A . n A 1 42 TRP 42 -2 ? ? ? A . n A 1 43 CYS 43 -1 ? ? ? A . n A 1 44 ILE 44 0 ? ? ? A . n A 1 45 LEU 45 1 ? ? ? A . n A 1 46 GLU 46 2 ? ? ? A . n A 1 47 HIS 47 3 3 HIS HIS A . n A 1 48 ASN 48 4 4 ASN ASN A . n A 1 49 TYR 49 5 5 TYR TYR A . n A 1 50 GLU 50 6 6 GLU GLU A . n A 1 51 ASP 51 7 7 ASP ASP A . n A 1 52 ILE 52 8 8 ILE ILE A . n A 1 53 ALA 53 9 9 ALA ALA A . n A 1 54 GLN 54 10 10 GLN GLN A . n A 1 55 GLU 55 11 11 GLU GLU A . n A 1 56 PHE 56 12 12 PHE PHE A . n A 1 57 ILE 57 13 13 ILE ILE A . n A 1 58 ASP 58 14 14 ASP ASP A . n A 1 59 PHE 59 15 15 PHE PHE A . n A 1 60 ILE 60 16 16 ILE ILE A . n A 1 61 TYR 61 17 17 TYR TYR A . n A 1 62 LYS 62 18 18 LYS LYS A . n A 1 63 ASN 63 19 19 ASN ASN A . n A 1 64 PRO 64 20 20 PRO PRO A . n A 1 65 THR 65 21 21 THR THR A . n A 1 66 THR 66 22 22 THR THR A . n A 1 67 TYR 67 23 23 TYR TYR A . n A 1 68 HIS 68 24 24 HIS HIS A . n A 1 69 VAL 69 25 25 VAL VAL A . n A 1 70 VAL 70 26 26 VAL VAL A . n A 1 71 SER 71 27 27 SER SER A . n A 1 72 PHE 72 28 28 PHE PHE A . n A 1 73 PHE 73 29 29 PHE PHE A . n A 1 74 ALA 74 30 30 ALA ALA A . n A 1 75 GLU 75 31 31 GLU GLU A . n A 1 76 LEU 76 32 32 LEU LEU A . n A 1 77 LEU 77 33 33 LEU LEU A . n A 1 78 ASP 78 34 34 ASP ASP A . n A 1 79 LYS 79 35 35 LYS LYS A . n A 1 80 HIS 80 36 36 HIS HIS A . n A 1 81 ASN 81 37 37 ASN ASN A . n A 1 82 PHE 82 38 38 PHE PHE A . n A 1 83 LYS 83 39 39 LYS LYS A . n A 1 84 TYR 84 40 40 TYR TYR A . n A 1 85 LEU 85 41 41 LEU LEU A . n A 1 86 SER 86 42 42 SER SER A . n A 1 87 GLU 87 43 43 GLU GLU A . n A 1 88 LYS 88 44 44 LYS LYS A . n A 1 89 SER 89 45 45 SER SER A . n A 1 90 ASN 90 46 46 ASN ASN A . n A 1 91 TRP 91 47 47 TRP TRP A . n A 1 92 GLN 92 48 48 GLN GLN A . n A 1 93 ASP 93 49 49 ASP ASP A . n A 1 94 SER 94 50 50 SER SER A . n A 1 95 ILE 95 51 51 ILE ILE A . n A 1 96 GLY 96 52 52 GLY GLY A . n A 1 97 GLU 97 53 53 GLU GLU A . n A 1 98 ASP 98 54 54 ASP ASP A . n A 1 99 GLY 99 55 55 GLY GLY A . n A 1 100 GLY 100 56 56 GLY GLY A . n A 1 101 LYS 101 57 57 LYS LYS A . n A 1 102 PHE 102 58 58 PHE PHE A . n A 1 103 TYR 103 59 59 TYR TYR A . n A 1 104 THR 104 60 60 THR THR A . n A 1 105 ILE 105 61 61 ILE ILE A . n A 1 106 ARG 106 62 62 ARG ARG A . n A 1 107 ASN 107 63 63 ASN ASN A . n A 1 108 GLY 108 64 64 GLY GLY A . n A 1 109 THR 109 65 65 THR THR A . n A 1 110 ASN 110 66 66 ASN ASN A . n A 1 111 LEU 111 67 67 LEU LEU A . n A 1 112 SER 112 68 68 SER SER A . n A 1 113 ALA 113 69 69 ALA ALA A . n A 1 114 PHE 114 70 70 PHE PHE A . n A 1 115 ILE 115 71 71 ILE ILE A . n A 1 116 LEU 116 72 72 LEU LEU A . n A 1 117 GLY 117 73 73 GLY GLY A . n A 1 118 LYS 118 74 74 LYS LYS A . n A 1 119 ASN 119 75 75 ASN ASN A . n A 1 120 TRP 120 76 76 TRP TRP A . n A 1 121 ARG 121 77 77 ARG ARG A . n A 1 122 ALA 122 78 78 ALA ALA A . n A 1 123 GLU 123 79 79 GLU GLU A . n A 1 124 LYS 124 80 80 LYS LYS A . n A 1 125 GLY 125 81 81 GLY GLY A . n A 1 126 VAL 126 82 82 VAL VAL A . n A 1 127 GLY 127 83 83 GLY GLY A . n A 1 128 VAL 128 84 84 VAL VAL A . n A 1 129 ILE 129 85 85 ILE ILE A . n A 1 130 GLY 130 86 86 GLY GLY A . n A 1 131 SER 131 87 87 SER SER A . n A 1 132 HIS 132 88 88 HIS HIS A . n A 1 133 VAL 133 89 89 VAL VAL A . n A 1 134 ASP 134 90 90 ASP ASP A . n A 1 135 ALA 135 91 91 ALA ALA A . n A 1 136 LEU 136 92 92 LEU LEU A . n A 1 137 THR 137 93 93 THR THR A . n A 1 138 VAL 138 94 94 VAL VAL A . n A 1 139 LYS 139 95 95 LYS LYS A . n A 1 140 LEU 140 96 96 LEU LEU A . n A 1 141 LYS 141 97 97 LYS LYS A . n A 1 142 PRO 142 98 98 PRO PRO A . n A 1 143 VAL 143 99 99 VAL VAL A . n A 1 144 SER 144 100 100 SER SER A . n A 1 145 PHE 145 101 101 PHE PHE A . n A 1 146 LYS 146 102 102 LYS LYS A . n A 1 147 ASP 147 103 103 ASP ASP A . n A 1 148 THR 148 104 104 THR THR A . n A 1 149 ALA 149 105 105 ALA ALA A . n A 1 150 GLU 150 106 106 GLU GLU A . n A 1 151 GLY 151 107 107 GLY GLY A . n A 1 152 TYR 152 108 108 TYR TYR A . n A 1 153 GLY 153 109 109 GLY GLY A . n A 1 154 ARG 154 110 110 ARG ARG A . n A 1 155 ILE 155 111 111 ILE ILE A . n A 1 156 ALA 156 112 112 ALA ALA A . n A 1 157 VAL 157 113 113 VAL VAL A . n A 1 158 ALA 158 114 114 ALA ALA A . n A 1 159 PRO 159 115 115 PRO PRO A . n A 1 160 TYR 160 116 116 TYR TYR A . n A 1 161 GLY 161 117 117 GLY GLY A . n A 1 162 GLY 162 118 118 GLY GLY A . n A 1 163 THR 163 119 119 THR THR A . n A 1 164 LEU 164 120 120 LEU LEU A . n A 1 165 ASN 165 121 121 ASN ASN A . n A 1 166 GLU 166 122 122 GLU GLU A . n A 1 167 LEU 167 123 123 LEU LEU A . n A 1 168 TRP 168 124 124 TRP TRP A . n A 1 169 LEU 169 125 125 LEU LEU A . n A 1 170 ASP 170 126 126 ASP ASP A . n A 1 171 ARG 171 127 127 ARG ARG A . n A 1 172 ASP 172 128 128 ASP ASP A . n A 1 173 LEU 173 129 129 LEU LEU A . n A 1 174 GLY 174 130 130 GLY GLY A . n A 1 175 ILE 175 131 131 ILE ILE A . n A 1 176 GLY 176 132 132 GLY GLY A . n A 1 177 GLY 177 133 133 GLY GLY A . n A 1 178 ARG 178 134 134 ARG ARG A . n A 1 179 LEU 179 135 135 LEU LEU A . n A 1 180 LEU 180 136 136 LEU LEU A . n A 1 181 TYR 181 137 137 TYR TYR A . n A 1 182 LYS 182 138 138 LYS LYS A . n A 1 183 LYS 183 139 139 LYS LYS A . n A 1 184 LYS 184 140 140 LYS LYS A . n A 1 185 GLY 185 141 141 GLY GLY A . n A 1 186 THR 186 142 142 THR THR A . n A 1 187 ASN 187 143 143 ASN ASN A . n A 1 188 GLU 188 144 144 GLU GLU A . n A 1 189 ILE 189 145 145 ILE ILE A . n A 1 190 LYS 190 146 146 LYS LYS A . n A 1 191 SER 191 147 147 SER SER A . n A 1 192 ALA 192 148 148 ALA ALA A . n A 1 193 LEU 193 149 149 LEU LEU A . n A 1 194 VAL 194 150 150 VAL VAL A . n A 1 195 ASP 195 151 151 ASP ASP A . n A 1 196 SER 196 152 152 SER SER A . n A 1 197 THR 197 153 153 THR THR A . n A 1 198 PRO 198 154 154 PRO PRO A . n A 1 199 LEU 199 155 155 LEU LEU A . n A 1 200 PRO 200 156 156 PRO PRO A . n A 1 201 VAL 201 157 157 VAL VAL A . n A 1 202 CYS 202 158 158 CYS CYS A . n A 1 203 ARG 203 159 159 ARG ARG A . n A 1 204 ILE 204 160 160 ILE ILE A . n A 1 205 PRO 205 161 161 PRO PRO A . n A 1 206 SER 206 162 162 SER SER A . n A 1 207 LEU 207 163 163 LEU LEU A . n A 1 208 ALA 208 164 164 ALA ALA A . n A 1 209 PRO 209 165 ? ? ? A . n A 1 210 HIS 210 166 ? ? ? A . n A 1 211 PHE 211 167 ? ? ? A . n A 1 212 GLY 212 168 ? ? ? A . n A 1 213 LYS 213 169 ? ? ? A . n A 1 214 PRO 214 170 ? ? ? A . n A 1 215 ALA 215 171 ? ? ? A . n A 1 216 GLU 216 172 ? ? ? A . n A 1 217 GLY 217 173 ? ? ? A . n A 1 218 PRO 218 174 ? ? ? A . n A 1 219 PHE 219 175 ? ? ? A . n A 1 220 ASP 220 176 ? ? ? A . n A 1 221 LYS 221 177 177 LYS LYS A . n A 1 222 GLU 222 178 178 GLU GLU A . n A 1 223 ASP 223 179 179 ASP ASP A . n A 1 224 GLN 224 180 180 GLN GLN A . n A 1 225 THR 225 181 181 THR THR A . n A 1 226 ILE 226 182 182 ILE ILE A . n A 1 227 PRO 227 183 183 PRO PRO A . n A 1 228 VAL 228 184 184 VAL VAL A . n A 1 229 ILE 229 185 ? ? ? A . n A 1 230 GLY 230 186 ? ? ? A . n A 1 231 PHE 231 187 ? ? ? A . n A 1 232 PRO 232 188 ? ? ? A . n A 1 233 THR 233 189 ? ? ? A . n A 1 234 PRO 234 190 ? ? ? A . n A 1 235 ASP 235 191 ? ? ? A . n A 1 236 GLU 236 192 ? ? ? A . n A 1 237 GLU 237 193 ? ? ? A . n A 1 238 GLY 238 194 ? ? ? A . n A 1 239 ASN 239 195 ? ? ? A . n A 1 240 GLU 240 196 196 GLU GLU A . n A 1 241 PRO 241 197 197 PRO PRO A . n A 1 242 PRO 242 198 198 PRO PRO A . n A 1 243 THR 243 199 199 THR THR A . n A 1 244 ASP 244 200 200 ASP ASP A . n A 1 245 ASP 245 201 201 ASP ASP A . n A 1 246 GLU 246 202 202 GLU GLU A . n A 1 247 LYS 247 203 203 LYS LYS A . n A 1 248 LYS 248 204 204 LYS LYS A . n A 1 249 SER 249 205 205 SER SER A . n A 1 250 PRO 250 206 206 PRO PRO A . n A 1 251 LEU 251 207 207 LEU LEU A . n A 1 252 PHE 252 208 208 PHE PHE A . n A 1 253 GLY 253 209 209 GLY GLY A . n A 1 254 LYS 254 210 210 LYS LYS A . n A 1 255 HIS 255 211 211 HIS HIS A . n A 1 256 CYS 256 212 212 CYS CYS A . n A 1 257 ILE 257 213 213 ILE ILE A . n A 1 258 HIS 258 214 214 HIS HIS A . n A 1 259 LEU 259 215 215 LEU LEU A . n A 1 260 LEU 260 216 216 LEU LEU A . n A 1 261 ARG 261 217 217 ARG ARG A . n A 1 262 TYR 262 218 218 TYR TYR A . n A 1 263 VAL 263 219 219 VAL VAL A . n A 1 264 ALA 264 220 220 ALA ALA A . n A 1 265 LYS 265 221 221 LYS LYS A . n A 1 266 LEU 266 222 222 LEU LEU A . n A 1 267 ALA 267 223 223 ALA ALA A . n A 1 268 GLY 268 224 224 GLY GLY A . n A 1 269 VAL 269 225 225 VAL VAL A . n A 1 270 GLU 270 226 226 GLU GLU A . n A 1 271 VAL 271 227 227 VAL VAL A . n A 1 272 SER 272 228 228 SER SER A . n A 1 273 GLU 273 229 229 GLU GLU A . n A 1 274 LEU 274 230 230 LEU LEU A . n A 1 275 ILE 275 231 231 ILE ILE A . n A 1 276 GLN 276 232 232 GLN GLN A . n A 1 277 MET 277 233 233 MET MET A . n A 1 278 ASP 278 234 234 ASP ASP A . n A 1 279 LEU 279 235 235 LEU LEU A . n A 1 280 ASP 280 236 236 ASP ASP A . n A 1 281 LEU 281 237 237 LEU LEU A . n A 1 282 PHE 282 238 238 PHE PHE A . n A 1 283 ASP 283 239 239 ASP ASP A . n A 1 284 VAL 284 240 240 VAL VAL A . n A 1 285 GLN 285 241 241 GLN GLN A . n A 1 286 LYS 286 242 242 LYS LYS A . n A 1 287 GLY 287 243 243 GLY GLY A . n A 1 288 THR 288 244 244 THR THR A . n A 1 289 ILE 289 245 245 ILE ILE A . n A 1 290 GLY 290 246 246 GLY GLY A . n A 1 291 GLY 291 247 247 GLY GLY A . n A 1 292 ILE 292 248 248 ILE ILE A . n A 1 293 GLY 293 249 249 GLY GLY A . n A 1 294 LYS 294 250 250 LYS LYS A . n A 1 295 HIS 295 251 251 HIS HIS A . n A 1 296 PHE 296 252 252 PHE PHE A . n A 1 297 LEU 297 253 253 LEU LEU A . n A 1 298 PHE 298 254 254 PHE PHE A . n A 1 299 ALA 299 255 255 ALA ALA A . n A 1 300 PRO 300 256 256 PRO PRO A . n A 1 301 ARG 301 257 257 ARG ARG A . n A 1 302 LEU 302 258 258 LEU LEU A . n A 1 303 ASP 303 259 259 ASP ASP A . n A 1 304 ASP 304 260 260 ASP ASP A . n A 1 305 ARG 305 261 261 ARG ARG A . n A 1 306 LEU 306 262 262 LEU LEU A . n A 1 307 CYS 307 263 263 CYS CYS A . n A 1 308 SER 308 264 264 SER SER A . n A 1 309 PHE 309 265 265 PHE PHE A . n A 1 310 ALA 310 266 266 ALA ALA A . n A 1 311 ALA 311 267 267 ALA ALA A . n A 1 312 MET 312 268 268 MET MET A . n A 1 313 ILE 313 269 269 ILE ILE A . n A 1 314 ALA 314 270 270 ALA ALA A . n A 1 315 LEU 315 271 271 LEU LEU A . n A 1 316 ILE 316 272 272 ILE ILE A . n A 1 317 CYS 317 273 273 CYS CYS A . n A 1 318 TYR 318 274 274 TYR TYR A . n A 1 319 ALA 319 275 275 ALA ALA A . n A 1 320 LYS 320 276 276 LYS LYS A . n A 1 321 ASP 321 277 277 ASP ASP A . n A 1 322 VAL 322 278 278 VAL VAL A . n A 1 323 ASN 323 279 279 ASN ASN A . n A 1 324 THR 324 280 280 THR THR A . n A 1 325 GLU 325 281 281 GLU GLU A . n A 1 326 GLU 326 282 282 GLU GLU A . n A 1 327 SER 327 283 283 SER SER A . n A 1 328 ASP 328 284 284 ASP ASP A . n A 1 329 LEU 329 285 285 LEU LEU A . n A 1 330 PHE 330 286 286 PHE PHE A . n A 1 331 SER 331 287 287 SER SER A . n A 1 332 THR 332 288 288 THR THR A . n A 1 333 VAL 333 289 289 VAL VAL A . n A 1 334 THR 334 290 290 THR THR A . n A 1 335 LEU 335 291 291 LEU LEU A . n A 1 336 TYR 336 292 292 TYR TYR A . n A 1 337 ASP 337 293 293 ASP ASP A . n A 1 338 ASN 338 294 294 ASN ASN A . n A 1 339 GLU 339 295 295 GLU GLU A . n A 1 340 GLU 340 296 296 GLU GLU A . n A 1 341 ILE 341 297 297 ILE ILE A . n A 1 342 GLY 342 298 298 GLY GLY A . n A 1 343 SER 343 299 299 SER SER A . n A 1 344 LEU 344 300 300 LEU LEU A . n A 1 345 THR 345 301 301 THR THR A . n A 1 346 ARG 346 302 302 ARG ARG A . n A 1 347 GLN 347 303 303 GLN GLN A . n A 1 348 GLY 348 304 304 GLY GLY A . n A 1 349 ALA 349 305 305 ALA ALA A . n A 1 350 LYS 350 306 306 LYS LYS A . n A 1 351 GLY 351 307 307 GLY GLY A . n A 1 352 GLY 352 308 308 GLY GLY A . n A 1 353 LEU 353 309 309 LEU LEU A . n A 1 354 LEU 354 310 310 LEU LEU A . n A 1 355 GLU 355 311 311 GLU GLU A . n A 1 356 SER 356 312 312 SER SER A . n A 1 357 VAL 357 313 313 VAL VAL A . n A 1 358 VAL 358 314 314 VAL VAL A . n A 1 359 GLU 359 315 315 GLU GLU A . n A 1 360 ARG 360 316 316 ARG ARG A . n A 1 361 SER 361 317 317 SER SER A . n A 1 362 SER 362 318 318 SER SER A . n A 1 363 SER 363 319 319 SER SER A . n A 1 364 ALA 364 320 320 ALA ALA A . n A 1 365 PHE 365 321 321 PHE PHE A . n A 1 366 THR 366 322 322 THR THR A . n A 1 367 LYS 367 323 323 LYS LYS A . n A 1 368 LYS 368 324 324 LYS LYS A . n A 1 369 PRO 369 325 325 PRO PRO A . n A 1 370 VAL 370 326 326 VAL VAL A . n A 1 371 ASP 371 327 327 ASP ASP A . n A 1 372 LEU 372 328 328 LEU LEU A . n A 1 373 HIS 373 329 329 HIS HIS A . n A 1 374 THR 374 330 330 THR THR A . n A 1 375 VAL 375 331 331 VAL VAL A . n A 1 376 TRP 376 332 332 TRP TRP A . n A 1 377 ALA 377 333 333 ALA ALA A . n A 1 378 ASN 378 334 334 ASN ASN A . n A 1 379 SER 379 335 335 SER SER A . n A 1 380 ILE 380 336 336 ILE ILE A . n A 1 381 ILE 381 337 337 ILE ILE A . n A 1 382 LEU 382 338 338 LEU LEU A . n A 1 383 SER 383 339 339 SER SER A . n A 1 384 ALA 384 340 340 ALA ALA A . n A 1 385 ASP 385 341 341 ASP ASP A . n A 1 386 VAL 386 342 342 VAL VAL A . n A 1 387 ASN 387 343 343 ASN ASN A . n A 1 388 HIS 388 344 344 HIS HIS A . n A 1 389 LEU 389 345 345 LEU LEU A . n A 1 390 TYR 390 346 346 TYR TYR A . n A 1 391 ASN 391 347 347 ASN ASN A . n A 1 392 PRO 392 348 348 PRO PRO A . n A 1 393 ASN 393 349 349 ASN ASN A . n A 1 394 PHE 394 350 350 PHE PHE A . n A 1 395 PRO 395 351 351 PRO PRO A . n A 1 396 GLU 396 352 352 GLU GLU A . n A 1 397 VAL 397 353 353 VAL VAL A . n A 1 398 TYR 398 354 354 TYR TYR A . n A 1 399 LEU 399 355 355 LEU LEU A . n A 1 400 LYS 400 356 356 LYS LYS A . n A 1 401 ASN 401 357 357 ASN ASN A . n A 1 402 HIS 402 358 358 HIS HIS A . n A 1 403 PHE 403 359 359 PHE PHE A . n A 1 404 PRO 404 360 360 PRO PRO A . n A 1 405 VAL 405 361 361 VAL VAL A . n A 1 406 PRO 406 362 362 PRO PRO A . n A 1 407 ASN 407 363 363 ASN ASN A . n A 1 408 VAL 408 364 364 VAL VAL A . n A 1 409 GLY 409 365 365 GLY GLY A . n A 1 410 ILE 410 366 366 ILE ILE A . n A 1 411 THR 411 367 367 THR THR A . n A 1 412 LEU 412 368 368 LEU LEU A . n A 1 413 SER 413 369 369 SER SER A . n A 1 414 LEU 414 370 370 LEU LEU A . n A 1 415 ASP 415 371 371 ASP ASP A . n A 1 416 PRO 416 372 372 PRO PRO A . n A 1 417 ASN 417 373 373 ASN ASN A . n A 1 418 GLY 418 374 374 GLY GLY A . n A 1 419 HIS 419 375 375 HIS HIS A . n A 1 420 MET 420 376 376 MET MET A . n A 1 421 ALA 421 377 377 ALA ALA A . n A 1 422 THR 422 378 378 THR THR A . n A 1 423 ASP 423 379 379 ASP ASP A . n A 1 424 VAL 424 380 380 VAL VAL A . n A 1 425 VAL 425 381 381 VAL VAL A . n A 1 426 GLY 426 382 382 GLY GLY A . n A 1 427 THR 427 383 383 THR THR A . n A 1 428 ALA 428 384 384 ALA ALA A . n A 1 429 LEU 429 385 385 LEU LEU A . n A 1 430 VAL 430 386 386 VAL VAL A . n A 1 431 GLU 431 387 387 GLU GLU A . n A 1 432 GLU 432 388 388 GLU GLU A . n A 1 433 LEU 433 389 389 LEU LEU A . n A 1 434 ALA 434 390 390 ALA ALA A . n A 1 435 ARG 435 391 391 ARG ARG A . n A 1 436 ARG 436 392 392 ARG ARG A . n A 1 437 ASN 437 393 393 ASN ASN A . n A 1 438 GLY 438 394 394 GLY GLY A . n A 1 439 ASP 439 395 395 ASP ASP A . n A 1 440 LYS 440 396 396 LYS LYS A . n A 1 441 VAL 441 397 397 VAL VAL A . n A 1 442 GLN 442 398 398 GLN GLN A . n A 1 443 TYR 443 399 399 TYR TYR A . n A 1 444 PHE 444 400 400 PHE PHE A . n A 1 445 GLN 445 401 401 GLN GLN A . n A 1 446 ILE 446 402 402 ILE ILE A . n A 1 447 LYS 447 403 ? ? ? A . n A 1 448 ASN 448 404 ? ? ? A . n A 1 449 ASN 449 405 ? ? ? A . n A 1 450 SER 450 406 ? ? ? A . n A 1 451 ARG 451 407 ? ? ? A . n A 1 452 SER 452 408 ? ? ? A . n A 1 453 GLY 453 409 ? ? ? A . n A 1 454 GLY 454 410 410 GLY GLY A . n A 1 455 THR 455 411 411 THR THR A . n A 1 456 ILE 456 412 412 ILE ILE A . n A 1 457 GLY 457 413 413 GLY GLY A . n A 1 458 PRO 458 414 414 PRO PRO A . n A 1 459 SER 459 415 415 SER SER A . n A 1 460 LEU 460 416 416 LEU LEU A . n A 1 461 ALA 461 417 417 ALA ALA A . n A 1 462 SER 462 418 418 SER SER A . n A 1 463 GLN 463 419 419 GLN GLN A . n A 1 464 THR 464 420 420 THR THR A . n A 1 465 GLY 465 421 421 GLY GLY A . n A 1 466 ALA 466 422 422 ALA ALA A . n A 1 467 ARG 467 423 423 ARG ARG A . n A 1 468 THR 468 424 424 THR THR A . n A 1 469 ILE 469 425 425 ILE ILE A . n A 1 470 ASP 470 426 426 ASP ASP A . n A 1 471 LEU 471 427 427 LEU LEU A . n A 1 472 GLY 472 428 428 GLY GLY A . n A 1 473 ILE 473 429 429 ILE ILE A . n A 1 474 ALA 474 430 430 ALA ALA A . n A 1 475 GLN 475 431 431 GLN GLN A . n A 1 476 LEU 476 432 432 LEU LEU A . n A 1 477 SER 477 433 433 SER SER A . n A 1 478 MET 478 434 434 MET MET A . n A 1 479 HIS 479 435 435 HIS HIS A . n A 1 480 SER 480 436 436 SER SER A . n A 1 481 ILE 481 437 437 ILE ILE A . n A 1 482 ARG 482 438 438 ARG ARG A . n A 1 483 ALA 483 439 439 ALA ALA A . n A 1 484 ALA 484 440 440 ALA ALA A . n A 1 485 THR 485 441 441 THR THR A . n A 1 486 GLY 486 442 442 GLY GLY A . n A 1 487 SER 487 443 443 SER SER A . n A 1 488 LYS 488 444 444 LYS LYS A . n A 1 489 ASP 489 445 445 ASP ASP A . n A 1 490 VAL 490 446 446 VAL VAL A . n A 1 491 GLY 491 447 447 GLY GLY A . n A 1 492 LEU 492 448 448 LEU LEU A . n A 1 493 GLY 493 449 449 GLY GLY A . n A 1 494 VAL 494 450 450 VAL VAL A . n A 1 495 LYS 495 451 451 LYS LYS A . n A 1 496 PHE 496 452 452 PHE PHE A . n A 1 497 PHE 497 453 453 PHE PHE A . n A 1 498 ASN 498 454 454 ASN ASN A . n A 1 499 GLY 499 455 455 GLY GLY A . n A 1 500 PHE 500 456 456 PHE PHE A . n A 1 501 PHE 501 457 457 PHE PHE A . n A 1 502 LYS 502 458 458 LYS LYS A . n A 1 503 HIS 503 459 459 HIS HIS A . n A 1 504 TRP 504 460 460 TRP TRP A . n A 1 505 ARG 505 461 461 ARG ARG A . n A 1 506 SER 506 462 462 SER SER A . n A 1 507 VAL 507 463 463 VAL VAL A . n A 1 508 TYR 508 464 464 TYR TYR A . n A 1 509 ASP 509 465 465 ASP ASP A . n A 1 510 GLU 510 466 466 GLU GLU A . n A 1 511 PHE 511 467 467 PHE PHE A . n A 1 512 GLY 512 468 468 GLY GLY A . n A 1 513 GLU 513 469 469 GLU GLU A . n A 1 514 LEU 514 470 470 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 0.000000 0.00000 0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.833400 -0.288300 -0.471600 109.10000 0.288800 -0.500400 0.816200 46.65000 -0.471300 -0.816400 -0.333800 308.80000 3 'point symmetry operation' ? ? -0.667700 -0.578000 -0.469200 319.82100 -0.576500 0.002768 0.817100 89.03790 -0.470900 0.816100 -0.335100 116.68300 4 'point symmetry operation' ? ? -0.166000 0.866500 -0.470700 90.79020 0.290000 0.499100 0.816600 -71.43600 0.942500 -0.000907 -0.334100 46.25120 5 'point symmetry operation' ? ? -0.500000 -0.866000 0.000074 278.73300 0.866000 -0.500000 0.000489 74.62150 -0.000387 0.000309 1.000000 0.00924 6 'point symmetry operation' ? ? -0.666800 0.577500 -0.471100 183.80000 0.577100 0.000144 -0.816700 146.00000 -0.471500 -0.816400 -0.333300 308.80000 7 'point symmetry operation' ? ? 0.833100 0.286600 -0.473000 41.72000 -0.290200 -0.501500 -0.815000 307.10000 -0.470800 0.816300 -0.334600 116.60000 8 'point symmetry operation' ? ? -0.168000 -0.865500 -0.471800 295.20000 -0.288300 0.500900 -0.816100 189.00000 0.942700 -0.001091 -0.333700 46.20000 9 'point symmetry operation' ? ? -0.500000 0.866000 -0.000392 74.74000 -0.866000 -0.500000 0.000311 278.70000 0.000074 0.000495 1.000000 -0.06700 10 'point symmetry operation' ? ? -0.166400 -0.288900 0.942800 60.45000 -0.866200 0.499600 0.000199 160.90000 -0.471100 -0.816600 -0.333400 308.80000 11 'point symmetry operation' ? ? -0.165300 0.291100 0.942300 -8.10400 0.866400 0.499400 -0.002296 -42.76000 -0.471300 0.816000 -0.334700 116.70000 12 'point symmetry operation' ? ? 0.333800 -0.001004 0.942700 -32.54000 -0.000897 -1.000000 -0.000747 235.80000 0.942700 -0.000596 -0.333800 46.16000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-15 2 'Structure model' 1 1 2016-06-22 3 'Structure model' 1 2 2016-06-29 4 'Structure model' 1 3 2016-07-13 5 'Structure model' 1 4 2017-08-02 6 'Structure model' 1 5 2017-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' em_3d_fitting 2 5 'Structure model' em_image_scans 3 5 'Structure model' em_software 4 6 'Structure model' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_em_3d_fitting.target_criteria' 2 5 'Structure model' '_em_software.name' 3 6 'Structure model' '_em_software.name' # _em_3d_fitting.entry_id 5JM9 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 4R8F # _em_3d_reconstruction.entry_id 5JM9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 5481 _em_3d_reconstruction.resolution 24 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Mature Aminopeptidase-1 dodecamer' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 5JM9 _em_imaging.accelerating_voltage 120 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source LAB6 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI/PHILIPS CM12' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification 53000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'SIDE ENTRY, EUCENTRIC' _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.specimen_holder_type ? _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? # _em_experiment.entry_id 5JM9 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 4 ? ? 69.13 -19.72 2 1 ILE A 8 ? ? 67.01 -27.89 3 1 ASN A 143 ? ? -140.28 43.67 4 1 SER A 299 ? ? 74.49 -5.94 5 1 HIS A 358 ? ? -146.95 45.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -43 ? A MET 1 2 1 Y 1 A GLU -42 ? A GLU 2 3 1 Y 1 A GLU -41 ? A GLU 3 4 1 Y 1 A GLN -40 ? A GLN 4 5 1 Y 1 A ARG -39 ? A ARG 5 6 1 Y 1 A GLU -38 ? A GLU 6 7 1 Y 1 A ILE -37 ? A ILE 7 8 1 Y 1 A LEU -36 ? A LEU 8 9 1 Y 1 A GLU -35 ? A GLU 9 10 1 Y 1 A GLN -34 ? A GLN 10 11 1 Y 1 A LEU -33 ? A LEU 11 12 1 Y 1 A LYS -32 ? A LYS 12 13 1 Y 1 A LYS -31 ? A LYS 13 14 1 Y 1 A THR -30 ? A THR 14 15 1 Y 1 A LEU -29 ? A LEU 15 16 1 Y 1 A GLN -28 ? A GLN 16 17 1 Y 1 A MET -27 ? A MET 17 18 1 Y 1 A LEU -26 ? A LEU 18 19 1 Y 1 A THR -25 ? A THR 19 20 1 Y 1 A VAL -24 ? A VAL 20 21 1 Y 1 A GLU -23 ? A GLU 21 22 1 Y 1 A PRO -22 ? A PRO 22 23 1 Y 1 A SER -21 ? A SER 23 24 1 Y 1 A LYS -20 ? A LYS 24 25 1 Y 1 A ASN -19 ? A ASN 25 26 1 Y 1 A ASN -18 ? A ASN 26 27 1 Y 1 A GLN -17 ? A GLN 27 28 1 Y 1 A ILE -16 ? A ILE 28 29 1 Y 1 A ALA -15 ? A ALA 29 30 1 Y 1 A ASN -14 ? A ASN 30 31 1 Y 1 A GLU -13 ? A GLU 31 32 1 Y 1 A GLU -12 ? A GLU 32 33 1 Y 1 A LYS -11 ? A LYS 33 34 1 Y 1 A GLU -10 ? A GLU 34 35 1 Y 1 A LYS -9 ? A LYS 35 36 1 Y 1 A LYS -8 ? A LYS 36 37 1 Y 1 A GLU -7 ? A GLU 37 38 1 Y 1 A ASN -6 ? A ASN 38 39 1 Y 1 A GLU -5 ? A GLU 39 40 1 Y 1 A ASN -4 ? A ASN 40 41 1 Y 1 A SER -3 ? A SER 41 42 1 Y 1 A TRP -2 ? A TRP 42 43 1 Y 1 A CYS -1 ? A CYS 43 44 1 Y 1 A ILE 0 ? A ILE 44 45 1 Y 1 A LEU 1 ? A LEU 45 46 1 Y 1 A GLU 2 ? A GLU 46 47 1 Y 1 A PRO 165 ? A PRO 209 48 1 Y 1 A HIS 166 ? A HIS 210 49 1 Y 1 A PHE 167 ? A PHE 211 50 1 Y 1 A GLY 168 ? A GLY 212 51 1 Y 1 A LYS 169 ? A LYS 213 52 1 Y 1 A PRO 170 ? A PRO 214 53 1 Y 1 A ALA 171 ? A ALA 215 54 1 Y 1 A GLU 172 ? A GLU 216 55 1 Y 1 A GLY 173 ? A GLY 217 56 1 Y 1 A PRO 174 ? A PRO 218 57 1 Y 1 A PHE 175 ? A PHE 219 58 1 Y 1 A ASP 176 ? A ASP 220 59 1 Y 1 A ILE 185 ? A ILE 229 60 1 Y 1 A GLY 186 ? A GLY 230 61 1 Y 1 A PHE 187 ? A PHE 231 62 1 Y 1 A PRO 188 ? A PRO 232 63 1 Y 1 A THR 189 ? A THR 233 64 1 Y 1 A PRO 190 ? A PRO 234 65 1 Y 1 A ASP 191 ? A ASP 235 66 1 Y 1 A GLU 192 ? A GLU 236 67 1 Y 1 A GLU 193 ? A GLU 237 68 1 Y 1 A GLY 194 ? A GLY 238 69 1 Y 1 A ASN 195 ? A ASN 239 70 1 Y 1 A LYS 403 ? A LYS 447 71 1 Y 1 A ASN 404 ? A ASN 448 72 1 Y 1 A ASN 405 ? A ASN 449 73 1 Y 1 A SER 406 ? A SER 450 74 1 Y 1 A ARG 407 ? A ARG 451 75 1 Y 1 A SER 408 ? A SER 452 76 1 Y 1 A GLY 409 ? A GLY 453 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 50 mM ? HEPES 1 2 150 mM NaCl 'Sodium Chloride' # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.6 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 4932 _em_entity_assembly_naturalsource.organ . _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Saccharomyces cerevisiae' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid pETM33 _em_entity_assembly_recombinant.strain 'BL21 RIL' # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F415 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5481 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? EMAN 2.01 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? EMAN 2.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? SPIDER ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? SPIDER 19.09 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details 'The sample was purified using a GraFix gradient.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied YES _em_specimen.vitrification_applied NO # _em_staining.id 1 _em_staining.specimen_id 1 _em_staining.details ? _em_staining.material 'Uranyl acetate' _em_staining.type NEGATIVE #